Reptile ecology and conservation a handbook of techniques

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Weitere Verfasser: Dodd, C. Kenneth 1949- (HerausgeberIn)
Format: Buch
Sprache:English
Veröffentlicht: Oxford Oxford University Press 2016
Ausgabe:First edition
Schriftenreihe:Techniques in ecology and conservation series
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adam_text Reptile Ecology and Conservation A Handbook of Techniques Edited by C Kenneth Dodd, Jr OXPORD UNIVERSITY PRESS Contents List of Contributors xxv Part 1 Introduction 1 Reptile diversity and life history 3 Laurie j Vitt 1 1 Introduction 3 1 2 Reptile diversity 3 121 Diversity 3 122 Evolutionary history and numbers of reptile species 3 123 Morphological and ecological diversity 5 1 3 Diversity of life histories 8 131 Definitions 8 132 General observations 8 133 Turtle life histories 8 134 Crocodilian life histories 8 135 Squamate life histories 10 136 Tuatara life history 11 1 4 Summary 1 2 References 13 2 Planning and setting objectives in field studies 1 6 Robert N Fisher 2 1 Introduction 1 6 2 2 Planning: goals versus objectives 1 6 2 3 Design 17 2 4 Conceptual models 1 9 2 5 Sampling considerations 20 2 6 Covariates 24 2 7 Timescales 24 2 8 Permits 25 2 9 Ethical considerations 28 2 10 Biosecurity 29 2 11 Conclusion 30 212 Example URLs for SMART objectives 30 References 30 xii I Contents 3 Data collection and storage 32 Richard A Seigel 3 1 Introduction 32 3 2 Flexibility: the research proposal versus the real world 33 3 3 Field notes 34 331 Mechanics of field notes 34 332 The field notebook 35 333 What to record and how to record it 36 3 4 Datasheets 3 8 341 General considerations 38 342 Mechanics of data sheets 38 3 5 Documenting the field site: photographs, GIS, and environmental data 39 3 6 Data: backing up and archiving 40 361 Data backups 41 362 Data archiving and metadata 41 3 7 Conclusions 42 Acknowledgements 42 References 42 Part 2 The Individual 4 Marking and measuring reptiles 45 John W Ferner and Michael V P/ummer 4 1 Introduction 45 4 2 Toe-clipping 46 43 Scale/scute-clipping 47 431 Snakes 47 432 Lizards 48 4 4 Branding and painting 49 441 Turtles 49 442 Lizards 50 443 Snakes 50 4 5 Shell notching 51 4 6 Tagging and banding 52 461 Lizards 52 462 Freshwater and terrestrial turtles 53 463 Snakes 54 4 7 Trailing devices 54 4 8 Passive integrated transponder (PIT) tags 54 481 Turtles 55 482 Lizards and snakes 55 4 9 Taking measurements 55 410 Recommendations References 5 Digital identification and analysis Roberto Sacchi, Stefano Scali, Marco Mangiacotti, Marco Sannolo, and Marco A L Zuffi 5 1 Introduction 5 2 Collecting images 521 Identification of distinctive features 522 Set-up of a photographic shoot 523 Photo shooting 524 Photo coding 525 Photo enhancement 5 3 Software and algorithms 531 l3S, Interactive Individual Identification System 532 Wild-ID 533 MYDAS 534 APHIS 5 4 How they work 5 5 Validation 5 6 Photo-identification in reptiles: present and future 561 The state of the art of photo-identification in reptiles 562 Where should we go from here? References 6 Preserving reptiles for research tSteve W Gotte, Jeremy F Jacobs, and George R Zug 6 1 Introduction 6 2 Planning and permits 6 3 Euthanasia 6 4 Specimen preservation and data collection 641 Record keeping 642 Preservation and positioning 6 5 Specimen transport and shipping 6 6 Useful resources Acknowledgements and notice References 7 Reproduction Gunther Kohler 7 1 Introduction 72A brief description of the genital tract in reptiles xiv | Contents 7 3 Dissections 89 7 4 Endoscopy 91 7 5 External examination and palpation 92 7 6 Imaging methods 93 7 7 Blood chemistry 93 7 8 Hormonal induction of egg laying 94 7 9 Conclusions 94 References 94 8 Diet 97 Luca Luiselli and Giovanni Amori 8 1 Introduction 97 8 2 Sources of material 97 8 3 Methods for examining diet and trophic interactions 99 831 Direct observation 99 832 Dissection of stomachs 99 833 Stomach flushing 100 834 Faecal pellets 102 835 Forced regurgitation 1 03 836 Stable isotopes 104 837 Doubly labelled water 104 8 4 Diet by volume or mass vs diet by prey number 105 8 5 Cut clearance times 105 8 6 Quantitative analyses of diet 106 References • 107 9 Movement patterns and telemetry 110 Bruce A Kingsbury and Nathan J Robinson 9 1 Introduction 110 9 2 Common considerations for telemetry studies 110 9 3 Telemetry devices 111 931 VHF transmitters 111 932 Acoustic telemetry 113 933 Satellite telemetry 113 9 4 Statistical techniques for analysing telemetry data 114 9 5 Taxonomic considerations 116 951 Terrestrial and freshwater turtles 116 952 Lizards and snakes 117 953 Crocodilians 1 1 8 954 Sea turtles 118 9 6 Future directions 119 References 120 Contents | xv Part 3 Sampling Reptiles 10 Surface-dwelling reptiles 125 John D Willson 10 1 Introduction 125 102 Selecting a capture method 125 10 2 1 Study goals and preliminary considerations 126 10 2 2 Capture rates 127 10 2 3 Cost and effort 127 10 2 4 Repeatability 127 10 2 5 Bias 128 103 Active capture techniques 128 10 3 1 Visual encounter surveys 128 1032 Cover boards 129 10 3 3 Road surveys 130 1034 Lizard noosing 131 10 3 5 Considerations and limitations 131 104 Passive capture techniques 131 10 4 1 Pitfall traps 131 10 4 2 Funnel traps 132 10 4 3 Drift fences 134 10 4 4 Considerations and limitations 134 10 5 Conclusions and recommendations 136 References 136 11 Arboreal and fossorial reptiles 1 39 Robert W Henderson, Robert Powell, Jose Martin, and Pilar Lopez , 11 1 Arboreal reptiles 139 11 1 1 Introduction 139 1112 General methods 140 11 1 3 Collecting methods 140 112 Fossorial reptiles 1 46 1121 Introduction 1 46 1122 Active searching 1 46 1123 Below-ground trapping 1 49 References 150 12 Sea snakes 154 Xavier Bonnet, Arne R Rasmussen, and Frangois Brischoux 12 1 Introduction 154 122 Locating, catching, and identifying sea snakes 155 12 2 1 Locating and catching snakes 155 1222 Amphibious sea snakes on land 1 55 1223 Sea snakes at sea 156 xvi Contents 12 3 Identifying sea snakes 157 12 4 Measuring and describing sea snakes 158 125 Photographing sea snakes 1 59 12 6 Recapture studies 160 12 6 1 Marking snakes 160 12 6 2 Organizing data 161 12 7 Blood and other tissue sampling 161 128 Bio-logging 1 62 129 Captivity 1 63 1210 Conclusions 1 63 References 165 13 Freshwater turtles 168 Richard C Vogt 13 1 Aquatic turtles on land 168 13 1 1 Miscellaneous techniques 168 13 1 2 Nest surveys 169 132 Aquatic turtles in water 169 13 2 1 Surprise, snorkelling, muddling, and polling 169 13 2 2 Baskingtraps 171 13 2 3 Basking surveys 171 1324 Trapping 172 13 3 Capture biases 178 Acknowledgements 178 References 178 14 Terrestrial turtles and tortoises 181 Margaretha D Hofmeyr and Brian T Henen 14 1 Introduction 181 142 Concepts in survey design 181 14 3 Review of survey methods 184 14 3 1 Mark-recapture 184 14 3 2 Visual encounter surveys 185 14 3 3 Line distance sampling 187 1434 Surrogates 188 14 3 5 Wildlife detector dog surveys 189 14 3 6 Other methods 190 144 Conclusions 191 References 1 91 Contents I xvii 15 Sea turtles 194 Seth Stapleton and Karen L Eckert 15 1 Introduction 194 152 Monitoring nesting beaches 196 15 2 1 Ground-based methods 196 15 2 2 Aerial survey methods 198 15 2 3 Nesting crawl identifications 199 15 2 4 Locating nests 200 15 2 5 Egg counts and nest excavations 202 153 Tagging 203 154 Local interviews 205 155 Summary 206 References 207 16 Crocodilians 211 Matthew Brien and Charlie Manolis 161 Introduction 211 162 Surveying 21 1 16 2 1 Spotlight surveys 21 1 1622 Aerial count surveys 214 16 2 3 Day count surveys 214 16 2 4 Nest counts 214 16 2 5 Other survey methods 215 163 Capture 215 16 3 1 Hand capture or tongs 21 5 1632 Noosing 215 1633 Skin harpoon 216 1634 Traps 216 1635 Snatch hook 217 16 3 6 Fixed-position snares 21 7 16 3 7 Nets 21 7 16 3 8 Baited hooks 218 163 9, Baited digestible hooks 218 164 Handling 218 16 4 1 Controlling the head 218 16 4 2 Securing the jaws 219 16 4 3 Restraining the limbs 219 1644 Temporary holding and transport 219 16 4 5 Immobilizing agents 219 165 Tagging 220 1651 Scute-clipping 220 xviii | Contents 16 5 2 Webbingtags 221 16 5 3 PIT tags 221 16 5 4 Eartags 221 1655 Anchor fish tags 221 16 5 6 Electronic tags 221 References 222 Part 4 Reptiles in the Community 17 Plot and transect censuses 227 Tiffany M Doan 17 1 Introduction 227 17 2 Trade-off between intensity and area 228 17 3 Plots versus transects 229 17 4 Valid implementation of plot and transect techniques 230 17 5 Standard plot and transect techniques 232 17 5 1 Visual encounter surveys on trails 232 17 5 2 Line transects 233 17 5 3 Quadrats 233 1754 Total removal plots 234 17 5 5 Other plot and transect techniques 235 17 6 Individual and habitat variables 236 17 7 Selecting the appropriate plot and transect techniques 236 Acknowledgements 238 References 238 1 8 Rapid assessments of reptile diversity 241 Indraneil Das 181 Introduction 241 182 What is an RA? 242 18 3 Planning components of RAs 242 18 3 1 Assembling literature and other resources 242 18 3 2 Permitting 243 18 3 3 Training of field personnel 243 1834 Timing 244 184 Field sampling 244 18 4 1 Community questionnaire surveys 244 1842 Visual encounter survey 245 18 4 3 Species list technique 246 1844 Trapping 246 18 4 5 Taxon-specific techniques 246 1846 Environmental DNA 248 18 5 Data analyses and limitations 248 Contents j xix 186 Summary 249 Acknowledgements 250 References 250 19 Measuring microhabitats used by non-avian reptiles 254 Henry R Mushinsky and Earl D McCoy 19 1 Introduction 254 19 2 Types of habitats and variables 257 193 Marine habitats: sea and brackish water turtles, sea snakes, crocodiles, marine iguanas 260 194 Freshwater habitats: freshwater turtles, water snakes, alligators, caimans 261 195 Terrestrial habitats: most lizards, most snakes, terrestrial turtles, Tuatara 263 19 6 Rocky habitats: lizards and snakes 264 19 7 Fossorial habitats: some lizards, amphisbaenids, some snakes 265 198 Arboreal habitats: some snakes, some lizards 266 19 9 Summary and recommendations 267 Acknowledgements 268 References 268 20 Water quality and toxicology 272 Christine Bishop 20 1 Introduction 272 20 2 Measurement of exposure and interpreting concentrations 273 20 3 Field collections to measure contamination in air, water, sediment, biota 273 20 3 1 Water, sediment, and biota sample container preparation for trace analyses 274 20 3 2 Sediments 274 20 3 3 Water 274 20 3 4 Water and sediment chemistry 275 20 3 5 Passive integrative samplers for air and water 275 20 4 Measurement of levels and effects of environmental contamination in reptiles 275 20 4 1 Measurement of contaminants in reptiles 275 20 4 2 Eggs 276 20 4 3 Internal organs and bone 276 20 4 4 Blood and plasma 276 20 4 5 Scales, claws, tails, scutes 277 20 5 Measurement of effects of environmental contaminants on reptiles 277 20 6 Population level effects of environmental contaminants in reptiles 279 20 7 Summary 279 References 279 xx I Contents 21 Richness, diversity, and similarity 283 C Kenneth Doddjr 21 1 Introduction 283 21 2 Data transformation 283 21 3 Species diversity 285 21 3 1 Sampling considerations 285 21 3 2 Species richness 286 21 3 3 Species accumulation curves 287 21 3 4 Heterogeneity 288 21 3 5 Evenness and dominance 290 21 4 Similarity 290 21 5 Software 293 21 6 Summary 294 References 294 22 Landscape ecology, biogeography, and CIS methods 298 Monika Bohm and Viorel D Popescu 22 1 Introduction 298 22 1 1 Landscape ecology, biogeography, and mac roecology 298 22 1 2 Geographic information systems (GIS) 299 22 2 Landscape ecology concepts applied to reptile ecology and conservation 303 22 2 1 Landscape composition and configuration 303 22 2 2 Structural and functional connectivity 303 22 2 3 Landscape thresholds and conservation management decision-making 305 22 2 4 Edge effects 306 22 3 GIS for species conservation 306 22 3 1 Modelling and mapping species distributions 306 22 3 2 Landscape ecology for reptile conservatior 307 22 3 3 Macroecology and biogeography for reptile conservation 308 22 4 Spatial statistics: the analysis of spatially correlated data 31 0 22 5 Shortcomings and future directions 311 References 31 3 Part 5 Experimental Applications, Physiological Ecology, and Cenetics 23 Experimental applications 317 Stephen ) Mullin 23 1 Introduction 317 23 2 Selecting species 318 23 2 1 Terrestrial species 318 Contents | xxi 23 2 2 Aquatic and semi-aquatic species 318 23 2 3 Additional considerations 319 23 3 Studies using cages 320 23 3 1 Lab-based mesocosms 320 23 3 2 In situ habitat enclosures 321 23 3 3 Cage construction and siting 326 23 3 4 The utility of zoological parks 328 23 4 Manipulative applications 328 23 4 1 Manipulating habitat 329 23 4 2 Manipulating individuals 329 23 5 Conclusions 331 Acknowledgements 332 References 332 24 Body temperatures and the thermal environment 337 Keith A Christian, Christopher R Tracy, and C Richard Tracy 24 1 Introduction 337 24 1 1 The importance thermal biology 337 24 1 2 The importance of using appropriate techniques to study thermal biology 337 24 1 3 Historical perspective 33 8 24 2 Techniques for quantifying thermal biology 342 24 2 1 Computational models 342 24 2 2 Physical models 343 24 3 Advantages and disadvantages of computational and physical models 344 24 4 Use of data loggers as surrogate physical Te models 345 24 5 Thermal transients 345 24 5 1 How to account for thermal transients in large animals 346 24 5 2 How big does an animal have to be before it is large? 347 24 6 Conclusions 347 References 349 25 Genetics in field ecology and conservation 352 Nancy N FitzSimmons and Joanna Sumner 25 1 Introduction 352 25 2 Genetic markers 353 25 2 1 Allozymes and restriction fragment length polymorphisms 353 25 2 2 Mitochondrial DNAsequencing 354 25 2 3 Nuclear gene sequencing 355 25 2 4 Nuclearmicrosatellites 356 25 2 5 Single nucleotide polymorphisms 357 25 2 6 Whole genome research 358 xxii | Contents 25 3 Initiating a genetic study 358 25 4 Labwork 359 25 5 Sample design 359 25 6 Sample collection and storage 360 25 6 1 Sampling considerations 360 25 6 2 Sample preservation 361 25 6 3 Long-term storage 361 25 6 4 Samplecuration 361 25 7 Data analysis and management 361 References 362 Part 6 Trends Analysis and Conservation Options 26 Occupancy models 373 Darryl I MacKenzie 26 1 Introduction 373 26 2 Method overview 374 26 3 Grand Skinkexample 377 26 4 Recent extensions 380 26 4 1 Multi-state occupancy 381 26 4 2 Multi-scale occupancy 381 26 4 3 Species misidentification 382 26 4 4 Correlated detections 382 26 5 Response to criticisms 383 26 6 Summary 384 References 386 27 Estimating abundance 388 Chris Sutherland and J Andrew Royle 27 1 Introduction 388 27 2 Closed population capture-recapture 388 27 2 1 Sampling a population 388 27 2 2 Estimating abundance using model M0 390 27 2 3 Variation in p: beyond M0 391 27 2 4 Removal sampling 391 27 2 5 Hierarchical capture-recapture models 392 27 2 6 Individual covariate models and distance sampling 392 27 2 7 Spatial capture-recapture 394 27 3 Software 395 27 4 Example: population size and density estimation of Sbw Worms 396 27 5 Summary 398 References 399 Contents | xxiii 28 Collecting biological samples for disease monitor ing 402 Elliott R Jacobson 28 1 Introduction 402 28 2 Ethics and animal welfare 402 28 3 Institutional Animal Care and Use Committees 403 28 4 Pain 404 28 5 Analgesia and anaesthesia 404 28 5 1 Local analgesics and central acting injectable anaesthetics 404 28 5 2 Inhalant anaesthetics 405 28 5 3 Post-surgical analgesia 405 28 6 Major infectious and non-infectious diseases 405 28 6 1 Infectious diseases 405 28 6 2 Non-infectious diseases 408 28 7 Collecting samples for disease diagnostics 409 28 7 1 Equipment 409 28 7 2 Blood collection and handling 410 28 7 3 Serology 41 1 28 7 4 Biopsies 41 1 28 7 5 Pathological evaluations 412 28 7 6 Cytodiagnostics 41 2 28 7 7 Microbiology 412 28 7 8 Molecular diagnostics 413 28 7 9 Preserving ecto-and endoparasites for identification 414 28 8 Biosecurity: preventing pathogen transmission 414 28 9 Conclusions 415 References 41 5 29 Conservation management 419 David A Pike 29 1 Introduction 41 9 29 1 1 Statutory protection 420 29 1 2 Habitat protection 421 29 1 3 Managing reptile populations 421 29 1 4 Monitoring populations 422 29 2 Habitats 422 29 2 1 Contiguous habitats, buffer zones, and edge effects 422 29 2 2 Habitat connectivity 426 29 2 3 Crossing transportation corridors 427 29 2 4 Microhabitats 428 29 3 Human-altered habitats 428 29 3 1 Agricultural landscapes 428 29 3 2 Silviculture 429 xxiv | Contents 29 3 3 Urban environments 430 29 3 4 Environmental contaminants 430 29 4 Intensive manipulation of individuals 430 29 4 1 Captive breeding 430 29 4 2 Relocation, repatriation, translocation (RRT) 431 29 4 3 Pest reduction 432 29 4 4 Biosecurity and disease 432 29 5 Conclusion 433 References 433 30 Education and outreach 436 Brian Gratwicke, Matthew Neff, Lindsay Renick Mayer, Sharon Ryan, and Jennifer Sevin 30 1 Introduction 436 30 2 Settinggoals 437 30 3 Campaigns and constituency-building 437 30 3 1 Audience 438 30 3 2 Story 438 30 3 3 Constituency-building 439 30 3 4 Community conservation 440 30 4 Nature centres, museums, and exhibits 440 30 5 Citizen science 442 30 6 Engaging teachers and schools 444 30 7 Tips for designing educational programmes for schoolchildren 444 30 8 Leadership development 445 30 9 Summary 446 References 446 Index 449
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series2 Techniques in ecology and conservation series
spellingShingle Reptile ecology and conservation a handbook of techniques
Ökologie (DE-588)4043207-5 gnd
Methode (DE-588)4038971-6 gnd
Artenschutz (DE-588)4112598-8 gnd
Reptilien (DE-588)4076664-0 gnd
subject_GND (DE-588)4043207-5
(DE-588)4038971-6
(DE-588)4112598-8
(DE-588)4076664-0
title Reptile ecology and conservation a handbook of techniques
title_auth Reptile ecology and conservation a handbook of techniques
title_exact_search Reptile ecology and conservation a handbook of techniques
title_full Reptile ecology and conservation a handbook of techniques edited by C. Kenneth Dodd, Jr.
title_fullStr Reptile ecology and conservation a handbook of techniques edited by C. Kenneth Dodd, Jr.
title_full_unstemmed Reptile ecology and conservation a handbook of techniques edited by C. Kenneth Dodd, Jr.
title_short Reptile ecology and conservation
title_sort reptile ecology and conservation a handbook of techniques
title_sub a handbook of techniques
topic Ökologie (DE-588)4043207-5 gnd
Methode (DE-588)4038971-6 gnd
Artenschutz (DE-588)4112598-8 gnd
Reptilien (DE-588)4076664-0 gnd
topic_facet Ökologie
Methode
Artenschutz
Reptilien
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