Reptile ecology and conservation a handbook of techniques
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Format: | Buch |
Sprache: | English |
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Oxford
Oxford University Press
2016
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Ausgabe: | First edition |
Schriftenreihe: | Techniques in ecology and conservation series
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Datensatz im Suchindex
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adam_text | Reptile Ecology
and Conservation
A Handbook of Techniques
Edited by
C Kenneth Dodd, Jr
OXPORD
UNIVERSITY PRESS
Contents
List of Contributors xxv
Part 1 Introduction
1 Reptile diversity and life history 3
Laurie j Vitt
1 1 Introduction 3
1 2 Reptile diversity 3
121 Diversity 3
122 Evolutionary history and numbers of reptile species 3
123 Morphological and ecological diversity 5
1 3 Diversity of life histories 8
131 Definitions 8
132 General observations 8
133 Turtle life histories 8
134 Crocodilian life histories 8
135 Squamate life histories 10
136 Tuatara life history 11
1 4 Summary 1 2
References 13
2 Planning and setting objectives in field studies 1 6
Robert N Fisher
2 1 Introduction 1 6
2 2 Planning: goals versus objectives 1 6
2 3 Design 17
2 4 Conceptual models 1 9
2 5 Sampling considerations 20
2 6 Covariates 24
2 7 Timescales 24
2 8 Permits 25
2 9 Ethical considerations 28
2 10 Biosecurity 29
2 11 Conclusion 30
212 Example URLs for SMART objectives 30
References 30
xii I Contents
3 Data collection and storage 32
Richard A Seigel
3 1 Introduction 32
3 2 Flexibility: the research proposal versus the real world 33
3 3 Field notes 34
331 Mechanics of field notes 34
332 The field notebook 35
333 What to record and how to record it 36
3 4 Datasheets 3 8
341 General considerations 38
342 Mechanics of data sheets 38
3 5 Documenting the field site: photographs, GIS, and
environmental data 39
3 6 Data: backing up and archiving 40
361 Data backups 41
362 Data archiving and metadata 41
3 7 Conclusions 42
Acknowledgements 42
References 42
Part 2 The Individual
4 Marking and measuring reptiles 45
John W Ferner and Michael V P/ummer
4 1 Introduction 45
4 2 Toe-clipping 46
43 Scale/scute-clipping 47
431 Snakes 47
432 Lizards 48
4 4 Branding and painting 49
441 Turtles 49
442 Lizards 50
443 Snakes 50
4 5 Shell notching 51
4 6 Tagging and banding 52
461 Lizards 52
462 Freshwater and terrestrial turtles 53
463 Snakes 54
4 7 Trailing devices 54
4 8 Passive integrated transponder (PIT) tags 54
481 Turtles 55
482 Lizards and snakes 55
4 9 Taking measurements 55
410 Recommendations
References
5 Digital identification and analysis
Roberto Sacchi, Stefano Scali, Marco Mangiacotti, Marco Sannolo,
and Marco A L Zuffi
5 1 Introduction
5 2 Collecting images
521 Identification of distinctive features
522 Set-up of a photographic shoot
523 Photo shooting
524 Photo coding
525 Photo enhancement
5 3 Software and algorithms
531 l3S, Interactive Individual Identification System
532 Wild-ID
533 MYDAS
534 APHIS
5 4 How they work
5 5 Validation
5 6 Photo-identification in reptiles: present and future
561 The state of the art of photo-identification in reptiles
562 Where should we go from here?
References
6 Preserving reptiles for research
tSteve W Gotte, Jeremy F Jacobs, and George R Zug
6 1 Introduction
6 2 Planning and permits
6 3 Euthanasia
6 4 Specimen preservation and data collection
641 Record keeping
642 Preservation and positioning
6 5 Specimen transport and shipping
6 6 Useful resources
Acknowledgements and notice
References
7 Reproduction
Gunther Kohler
7 1 Introduction
72A brief description of the genital tract in reptiles
xiv | Contents
7 3 Dissections 89
7 4 Endoscopy 91
7 5 External examination and palpation 92
7 6 Imaging methods 93
7 7 Blood chemistry 93
7 8 Hormonal induction of egg laying 94
7 9 Conclusions 94
References 94
8 Diet 97
Luca Luiselli and Giovanni Amori
8 1 Introduction 97
8 2 Sources of material 97
8 3 Methods for examining diet and trophic interactions 99
831 Direct observation 99
832 Dissection of stomachs 99
833 Stomach flushing 100
834 Faecal pellets 102
835 Forced regurgitation 1 03
836 Stable isotopes 104
837 Doubly labelled water 104
8 4 Diet by volume or mass vs diet by prey number 105
8 5 Cut clearance times 105
8 6 Quantitative analyses of diet 106
References • 107
9 Movement patterns and telemetry 110
Bruce A Kingsbury and Nathan J Robinson
9 1 Introduction 110
9 2 Common considerations for telemetry studies 110
9 3 Telemetry devices 111
931 VHF transmitters 111
932 Acoustic telemetry 113
933 Satellite telemetry 113
9 4 Statistical techniques for analysing telemetry data 114
9 5 Taxonomic considerations 116
951 Terrestrial and freshwater turtles 116
952 Lizards and snakes 117
953 Crocodilians 1 1 8
954 Sea turtles 118
9 6 Future directions 119
References 120
Contents | xv
Part 3 Sampling Reptiles
10 Surface-dwelling reptiles 125
John D Willson
10 1 Introduction 125
102 Selecting a capture method 125
10 2 1 Study goals and preliminary considerations 126
10 2 2 Capture rates 127
10 2 3 Cost and effort 127
10 2 4 Repeatability 127
10 2 5 Bias 128
103 Active capture techniques 128
10 3 1 Visual encounter surveys 128
1032 Cover boards 129
10 3 3 Road surveys 130
1034 Lizard noosing 131
10 3 5 Considerations and limitations 131
104 Passive capture techniques 131
10 4 1 Pitfall traps 131
10 4 2 Funnel traps 132
10 4 3 Drift fences 134
10 4 4 Considerations and limitations 134
10 5 Conclusions and recommendations 136
References 136
11 Arboreal and fossorial reptiles 1 39
Robert W Henderson, Robert Powell, Jose Martin, and Pilar Lopez
, 11 1 Arboreal reptiles 139
11 1 1 Introduction 139
1112 General methods 140
11 1 3 Collecting methods 140
112 Fossorial reptiles 1 46
1121 Introduction 1 46
1122 Active searching 1 46
1123 Below-ground trapping 1 49
References 150
12 Sea snakes 154
Xavier Bonnet, Arne R Rasmussen, and Frangois Brischoux
12 1 Introduction 154
122 Locating, catching, and identifying sea snakes 155
12 2 1 Locating and catching snakes 155
1222 Amphibious sea snakes on land 1 55
1223 Sea snakes at sea 156
xvi Contents
12 3 Identifying sea snakes 157
12 4 Measuring and describing sea snakes 158
125 Photographing sea snakes 1 59
12 6 Recapture studies 160
12 6 1 Marking snakes 160
12 6 2 Organizing data 161
12 7 Blood and other tissue sampling 161
128 Bio-logging 1 62
129 Captivity 1 63
1210 Conclusions 1 63
References 165
13 Freshwater turtles 168
Richard C Vogt
13 1 Aquatic turtles on land 168
13 1 1 Miscellaneous techniques 168
13 1 2 Nest surveys 169
132 Aquatic turtles in water 169
13 2 1 Surprise, snorkelling, muddling, and polling 169
13 2 2 Baskingtraps 171
13 2 3 Basking surveys 171
1324 Trapping 172
13 3 Capture biases 178
Acknowledgements 178
References 178
14 Terrestrial turtles and tortoises 181
Margaretha D Hofmeyr and Brian T Henen
14 1 Introduction 181
142 Concepts in survey design 181
14 3 Review of survey methods 184
14 3 1 Mark-recapture 184
14 3 2 Visual encounter surveys 185
14 3 3 Line distance sampling 187
1434 Surrogates 188
14 3 5 Wildlife detector dog surveys 189
14 3 6 Other methods 190
144 Conclusions 191
References 1 91
Contents I xvii
15 Sea turtles 194
Seth Stapleton and Karen L Eckert
15 1 Introduction 194
152 Monitoring nesting beaches 196
15 2 1 Ground-based methods 196
15 2 2 Aerial survey methods 198
15 2 3 Nesting crawl identifications 199
15 2 4 Locating nests 200
15 2 5 Egg counts and nest excavations 202
153 Tagging 203
154 Local interviews 205
155 Summary 206
References 207
16 Crocodilians 211
Matthew Brien and Charlie Manolis
161 Introduction 211
162 Surveying 21 1
16 2 1 Spotlight surveys 21 1
1622 Aerial count surveys 214
16 2 3 Day count surveys 214
16 2 4 Nest counts 214
16 2 5 Other survey methods 215
163 Capture 215
16 3 1 Hand capture or tongs 21 5
1632 Noosing 215
1633 Skin harpoon 216
1634 Traps 216
1635 Snatch hook 217
16 3 6 Fixed-position snares 21 7
16 3 7 Nets 21 7
16 3 8 Baited hooks 218
163 9, Baited digestible hooks 218
164 Handling 218
16 4 1 Controlling the head 218
16 4 2 Securing the jaws 219
16 4 3 Restraining the limbs 219
1644 Temporary holding and transport 219
16 4 5 Immobilizing agents 219
165 Tagging 220
1651 Scute-clipping 220
xviii | Contents
16 5 2 Webbingtags 221
16 5 3 PIT tags 221
16 5 4 Eartags 221
1655 Anchor fish tags 221
16 5 6 Electronic tags 221
References 222
Part 4 Reptiles in the Community
17 Plot and transect censuses 227
Tiffany M Doan
17 1 Introduction 227
17 2 Trade-off between intensity and area 228
17 3 Plots versus transects 229
17 4 Valid implementation of plot and transect techniques 230
17 5 Standard plot and transect techniques 232
17 5 1 Visual encounter surveys on trails 232
17 5 2 Line transects 233
17 5 3 Quadrats 233
1754 Total removal plots 234
17 5 5 Other plot and transect techniques 235
17 6 Individual and habitat variables 236
17 7 Selecting the appropriate plot and transect techniques 236
Acknowledgements 238
References 238
1 8 Rapid assessments of reptile diversity 241
Indraneil Das
181 Introduction 241
182 What is an RA? 242
18 3 Planning components of RAs 242
18 3 1 Assembling literature and other resources 242
18 3 2 Permitting 243
18 3 3 Training of field personnel 243
1834 Timing 244
184 Field sampling 244
18 4 1 Community questionnaire surveys 244
1842 Visual encounter survey 245
18 4 3 Species list technique 246
1844 Trapping 246
18 4 5 Taxon-specific techniques 246
1846 Environmental DNA 248
18 5 Data analyses and limitations 248
Contents j xix
186 Summary 249
Acknowledgements 250
References 250
19 Measuring microhabitats used by non-avian reptiles 254
Henry R Mushinsky and Earl D McCoy
19 1 Introduction 254
19 2 Types of habitats and variables 257
193 Marine habitats: sea and brackish water turtles, sea snakes, crocodiles,
marine iguanas 260
194 Freshwater habitats: freshwater turtles, water snakes, alligators, caimans 261
195 Terrestrial habitats: most lizards, most snakes, terrestrial turtles, Tuatara 263
19 6 Rocky habitats: lizards and snakes 264
19 7 Fossorial habitats: some lizards, amphisbaenids, some snakes 265
198 Arboreal habitats: some snakes, some lizards 266
19 9 Summary and recommendations 267
Acknowledgements 268
References 268
20 Water quality and toxicology 272
Christine Bishop
20 1 Introduction 272
20 2 Measurement of exposure and interpreting concentrations 273
20 3 Field collections to measure contamination in air, water,
sediment, biota 273
20 3 1 Water, sediment, and biota sample container preparation
for trace analyses 274
20 3 2 Sediments 274
20 3 3 Water 274
20 3 4 Water and sediment chemistry 275
20 3 5 Passive integrative samplers for air and water 275
20 4 Measurement of levels and effects of environmental contamination
in reptiles 275
20 4 1 Measurement of contaminants in reptiles 275
20 4 2 Eggs 276
20 4 3 Internal organs and bone 276
20 4 4 Blood and plasma 276
20 4 5 Scales, claws, tails, scutes 277
20 5 Measurement of effects of environmental contaminants on reptiles 277
20 6 Population level effects of environmental contaminants in reptiles 279
20 7 Summary 279
References 279
xx I Contents
21 Richness, diversity, and similarity 283
C Kenneth Doddjr
21 1 Introduction 283
21 2 Data transformation 283
21 3 Species diversity 285
21 3 1 Sampling considerations 285
21 3 2 Species richness 286
21 3 3 Species accumulation curves 287
21 3 4 Heterogeneity 288
21 3 5 Evenness and dominance 290
21 4 Similarity 290
21 5 Software 293
21 6 Summary 294
References 294
22 Landscape ecology, biogeography, and CIS methods 298
Monika Bohm and Viorel D Popescu
22 1 Introduction 298
22 1 1 Landscape ecology, biogeography, and mac roecology 298
22 1 2 Geographic information systems (GIS) 299
22 2 Landscape ecology concepts applied to reptile ecology and conservation 303
22 2 1 Landscape composition and configuration 303
22 2 2 Structural and functional connectivity 303
22 2 3 Landscape thresholds and conservation management
decision-making 305
22 2 4 Edge effects 306
22 3 GIS for species conservation 306
22 3 1 Modelling and mapping species distributions 306
22 3 2 Landscape ecology for reptile conservatior 307
22 3 3 Macroecology and biogeography for reptile conservation 308
22 4 Spatial statistics: the analysis of spatially correlated data 31 0
22 5 Shortcomings and future directions 311
References 31 3
Part 5 Experimental Applications, Physiological Ecology,
and Cenetics
23 Experimental applications 317
Stephen ) Mullin
23 1 Introduction 317
23 2 Selecting species 318
23 2 1 Terrestrial species 318
Contents | xxi
23 2 2 Aquatic and semi-aquatic species 318
23 2 3 Additional considerations 319
23 3 Studies using cages 320
23 3 1 Lab-based mesocosms 320
23 3 2 In situ habitat enclosures 321
23 3 3 Cage construction and siting 326
23 3 4 The utility of zoological parks 328
23 4 Manipulative applications 328
23 4 1 Manipulating habitat 329
23 4 2 Manipulating individuals 329
23 5 Conclusions 331
Acknowledgements 332
References 332
24 Body temperatures and the thermal environment 337
Keith A Christian, Christopher R Tracy, and C Richard Tracy
24 1 Introduction 337
24 1 1 The importance thermal biology 337
24 1 2 The importance of using appropriate techniques to study
thermal biology 337
24 1 3 Historical perspective 33 8
24 2 Techniques for quantifying thermal biology 342
24 2 1 Computational models 342
24 2 2 Physical models 343
24 3 Advantages and disadvantages of computational and physical models 344
24 4 Use of data loggers as surrogate physical Te models 345
24 5 Thermal transients 345
24 5 1 How to account for thermal transients in large animals 346
24 5 2 How big does an animal have to be before it is large? 347
24 6 Conclusions 347
References 349
25 Genetics in field ecology and conservation 352
Nancy N FitzSimmons and Joanna Sumner
25 1 Introduction 352
25 2 Genetic markers 353
25 2 1 Allozymes and restriction fragment length polymorphisms 353
25 2 2 Mitochondrial DNAsequencing 354
25 2 3 Nuclear gene sequencing 355
25 2 4 Nuclearmicrosatellites 356
25 2 5 Single nucleotide polymorphisms 357
25 2 6 Whole genome research 358
xxii | Contents
25 3 Initiating a genetic study 358
25 4 Labwork 359
25 5 Sample design 359
25 6 Sample collection and storage 360
25 6 1 Sampling considerations 360
25 6 2 Sample preservation 361
25 6 3 Long-term storage 361
25 6 4 Samplecuration 361
25 7 Data analysis and management 361
References 362
Part 6 Trends Analysis and Conservation Options
26 Occupancy models 373
Darryl I MacKenzie
26 1 Introduction 373
26 2 Method overview 374
26 3 Grand Skinkexample 377
26 4 Recent extensions 380
26 4 1 Multi-state occupancy 381
26 4 2 Multi-scale occupancy 381
26 4 3 Species misidentification 382
26 4 4 Correlated detections 382
26 5 Response to criticisms 383
26 6 Summary 384
References 386
27 Estimating abundance 388
Chris Sutherland and J Andrew Royle
27 1 Introduction 388
27 2 Closed population capture-recapture 388
27 2 1 Sampling a population 388
27 2 2 Estimating abundance using model M0 390
27 2 3 Variation in p: beyond M0 391
27 2 4 Removal sampling 391
27 2 5 Hierarchical capture-recapture models 392
27 2 6 Individual covariate models and distance sampling 392
27 2 7 Spatial capture-recapture 394
27 3 Software 395
27 4 Example: population size and density estimation of Sbw Worms 396
27 5 Summary 398
References 399
Contents | xxiii
28 Collecting biological samples for disease monitor ing 402
Elliott R Jacobson
28 1 Introduction 402
28 2 Ethics and animal welfare 402
28 3 Institutional Animal Care and Use Committees 403
28 4 Pain 404
28 5 Analgesia and anaesthesia 404
28 5 1 Local analgesics and central acting injectable anaesthetics 404
28 5 2 Inhalant anaesthetics 405
28 5 3 Post-surgical analgesia 405
28 6 Major infectious and non-infectious diseases 405
28 6 1 Infectious diseases 405
28 6 2 Non-infectious diseases 408
28 7 Collecting samples for disease diagnostics 409
28 7 1 Equipment 409
28 7 2 Blood collection and handling 410
28 7 3 Serology 41 1
28 7 4 Biopsies 41 1
28 7 5 Pathological evaluations 412
28 7 6 Cytodiagnostics 41 2
28 7 7 Microbiology 412
28 7 8 Molecular diagnostics 413
28 7 9 Preserving ecto-and endoparasites for identification 414
28 8 Biosecurity: preventing pathogen transmission 414
28 9 Conclusions 415
References 41 5
29 Conservation management 419
David A Pike
29 1 Introduction 41 9
29 1 1 Statutory protection 420
29 1 2 Habitat protection 421
29 1 3 Managing reptile populations 421
29 1 4 Monitoring populations 422
29 2 Habitats 422
29 2 1 Contiguous habitats, buffer zones, and edge effects 422
29 2 2 Habitat connectivity 426
29 2 3 Crossing transportation corridors 427
29 2 4 Microhabitats 428
29 3 Human-altered habitats 428
29 3 1 Agricultural landscapes 428
29 3 2 Silviculture 429
xxiv | Contents
29 3 3 Urban environments 430
29 3 4 Environmental contaminants 430
29 4 Intensive manipulation of individuals 430
29 4 1 Captive breeding 430
29 4 2 Relocation, repatriation, translocation (RRT) 431
29 4 3 Pest reduction 432
29 4 4 Biosecurity and disease 432
29 5 Conclusion 433
References 433
30 Education and outreach 436
Brian Gratwicke, Matthew Neff, Lindsay Renick Mayer, Sharon Ryan,
and Jennifer Sevin
30 1 Introduction 436
30 2 Settinggoals 437
30 3 Campaigns and constituency-building 437
30 3 1 Audience 438
30 3 2 Story 438
30 3 3 Constituency-building 439
30 3 4 Community conservation 440
30 4 Nature centres, museums, and exhibits 440
30 5 Citizen science 442
30 6 Engaging teachers and schools 444
30 7 Tips for designing educational programmes for schoolchildren 444
30 8 Leadership development 445
30 9 Summary 446
References 446
Index 449
|
any_adam_object | 1 |
author2 | Dodd, C. Kenneth 1949- |
author2_role | edt |
author2_variant | c k d ck ckd |
author_GND | (DE-588)1113680466 |
author_facet | Dodd, C. Kenneth 1949- |
building | Verbundindex |
bvnumber | BV043948680 |
classification_rvk | WR 8100 |
ctrlnum | (OCoLC)964701043 (DE-599)BSZ470587237 |
dewey-full | 597.917 |
dewey-hundreds | 500 - Natural sciences and mathematics |
dewey-ones | 597 - Cold-blooded vertebrates |
dewey-raw | 597.917 |
dewey-search | 597.917 |
dewey-sort | 3597.917 |
dewey-tens | 590 - Animals |
discipline | Biologie |
edition | First edition |
format | Book |
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indexdate | 2024-12-24T05:34:57Z |
institution | BVB |
isbn | 9780198726135 9780198726142 |
language | English |
oai_aleph_id | oai:aleph.bib-bvb.de:BVB01-029357586 |
oclc_num | 964701043 |
open_access_boolean | |
owner | DE-20 DE-11 DE-B16 |
owner_facet | DE-20 DE-11 DE-B16 |
physical | XXVIII, 462 Seiten Illustrationen, Diagramme |
publishDate | 2016 |
publishDateSearch | 2016 |
publishDateSort | 2016 |
publisher | Oxford University Press |
record_format | marc |
series2 | Techniques in ecology and conservation series |
spellingShingle | Reptile ecology and conservation a handbook of techniques Ökologie (DE-588)4043207-5 gnd Methode (DE-588)4038971-6 gnd Artenschutz (DE-588)4112598-8 gnd Reptilien (DE-588)4076664-0 gnd |
subject_GND | (DE-588)4043207-5 (DE-588)4038971-6 (DE-588)4112598-8 (DE-588)4076664-0 |
title | Reptile ecology and conservation a handbook of techniques |
title_auth | Reptile ecology and conservation a handbook of techniques |
title_exact_search | Reptile ecology and conservation a handbook of techniques |
title_full | Reptile ecology and conservation a handbook of techniques edited by C. Kenneth Dodd, Jr. |
title_fullStr | Reptile ecology and conservation a handbook of techniques edited by C. Kenneth Dodd, Jr. |
title_full_unstemmed | Reptile ecology and conservation a handbook of techniques edited by C. Kenneth Dodd, Jr. |
title_short | Reptile ecology and conservation |
title_sort | reptile ecology and conservation a handbook of techniques |
title_sub | a handbook of techniques |
topic | Ökologie (DE-588)4043207-5 gnd Methode (DE-588)4038971-6 gnd Artenschutz (DE-588)4112598-8 gnd Reptilien (DE-588)4076664-0 gnd |
topic_facet | Ökologie Methode Artenschutz Reptilien |
url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=029357586&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
work_keys_str_mv | AT doddckenneth reptileecologyandconservationahandbookoftechniques |