Pacific Symposium on Biocomputing 2003 Kauai, Hawaii, 3-7 January 2003

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245 1 0 |a Pacific Symposium on Biocomputing 2003  |b Kauai, Hawaii, 3-7 January 2003  |c edited by Russ B. Altman ... [et al.] 
246 1 3 |a Biocomputing 2003 
264 1 |a Singapore  |b World Scientific  |c c2002 
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500 |a Includes bibliographical references 
500 |a Gene regulation. Session introduction / S. Batzoglou and L. Pachter -- Multiclass cancer classification using gene expression profiling and probabilistic neural networks / D.P. Berrar, C.S. Downes, and W. Dubitzky -- Inferring gene regulatory networks from time-ordered gene expression data of bacillus subtilis using differential equations / M.J.L. de Hoon ... [et al.] -- Genome-wide analysis of bacterial promoter regions / E. Eskin ... [et al.] -- MOPAC: motif finding by preprocessing and agglomerative clustering from microarrays / R. Ganesh, D.A. Siegele, and T.R. Ioerger -- Improved gene selection for classification of microarrays / J. Jaeger, R. Sengupta, and W.L. Ruzzo -- Kernel Cox regression models for linking gene expression profiles to censored survival data / H. Li and Y. Luan -- Extracting conserved gene expression motifs from gene expression data / T.M. Murali and S. Kasif -- Decomposing gene expression into cellular processes / E. Segal, A. Battle, and D. Roller --  
500 |a  - Genome, pathway, and interaction bioinformatics. Session Introduction / P. Karp ... [et al.] -- Suitability and utility of computational analysis tools: characterization of erythrocyte parameter variation / R.E. Altenbaugh, K.J. Kauffman, and J.S. Edwards -- Foundations of a query and simulation system for the modeling of biochemical and biological processes / M. Antoniotti ... [et al.] -- Incorporating biological knowledge into evaluation of causal regulatory hypotheses / L. Chrisman ... [et al.] -- Assessment of the reliability of protein-protein interactions and protein function prediction / M. Deng, F. Sun, and T. Chen -- Boundary formation by notch signaling in drosophila multicellular systems: experimental observations and gene network modeling by genomic object net / H. Matsuno ... [et al.] -- Influence of network topology and data collection on network inference / V.A. Smith, E.D. Jarvis, and A.J. Hartemink --  
500 |a  - Informatics approaches in structural genomics. Session introduction / S.D. Mooney and P.C. Babbit -- Simultaneous sequence alignment and tree construction using hidden Markov models / R.C. Edgar and K. Sjölander -- Towards discovering structural signatures of protein folds based on logical hidden Markov models / K. Kersting ... [et al.] -- Automated construction of structural motifs for predicting functional sites on protein structures / M.P. Liang, D.L. Brutlag, and R.B. Altman -- Prediction of boundaries between intrinsically ordered and disordered protein regions / P. Radivojac ... [et al.] -- Identifying structural motifs in proteins / R. Singh and M. Saha -- A path planning-based study of protein folding with a case study of hairpin formation in protein G and L / G. Song ... [et al.] -- Profile-profile alignment: a powerful tool for protein structure prediction / N. von Öhsen, I. Sommer, and R. Zimmer -- Protein threading by linear programming / J. Xu ... [et al.] 
500 |a Genome-wide analysis and comparative genomics. Session introduction / L. Wei, I. Dubchak, and V. Solovyev -- Towards identifying lateral gene transfer events / L. Addario-Berry, M. Hallett, and J. Lagergren -- Whole genome human/mouse phylogenetic footprinting of potential transcription regulatory signals / E. Cheremushkin and A. Kel -- MAP: searching large genome databases / T. Kahveci and A. Singh -- Towards the development of computational tools for evaluating phylogenetic network reconstruction methods / L. Nakhleh ... [et al.] -- Identification of regulatory binding sites using minimum spanning trees / V. Olman, D. Xu, and Y. Xu -- Intrasplicing -- analysis of long intron sequences / S. Ott ... [et al.] -- Trajectory clustering: a non-parametric method for grouping gene expression time courses, with applications to mammary development / T.L. Phang ... [et al.] -- Algorithms for multiple genome rearrangement by signed reversals / S. Wu and X. Gu --  
500 |a  - DIGIT: a novel gene finding program by combining gene-finders / T. Yada ... [et al.] -- Linking biomedical language, information and knowledge. Session introduction / L. Hirschman ... [et al.] -- Evaluation of the vector space representation in text-based gene clustering / P. Glenisson ... [et al.] -- Playing biology's name game: identifying protein names in scientific text / D. Hanisch ... [et al.] -- Mining terminological knowledge in large biomedical corpora / H. Liu and C. Friedman -- A biological named entity recognizer / M. Narayanaswamy, K.E. Ravikumar, and K. Vijay-Shanker -- Linking biomedical language information and knowledge resources: GO and UMLS / I.N. Sarkar ... [et al.] -- A simple algorithm for identifying abbreviation definitions in biomedical text / A.S. Schwartz and M.A. Hearst -- Human genome variation: haplotypes, linkage disequilibrium, and populations. Session introduction / F.M. De La Vega, K.K. Kidd, and I.S. Kohane --  
500 |a  - Selection of minimum subsets of single nucleotide polymorphisms to capture haplotype block diversity / H.I. Avi-Itzhak, X. Su, and F.M. De La Vega -- On the power to detect SNP/phenotype association in candidate quantitative trait loci genomic regions: a simulation study / J.M. Comeron, M. Kreitman, and F.M. De La Vega -- Errors and linkage disequilibrium interact multiplicatively when computing sample sizes for genetic case-control association studies / D. Gordon ... [et al.] -- An MDL method for finding haplotype blocks and for estimating the strength of haplotype block boundaries / M. Koivisto ... [et al.] -- PyPop: a software framework for population genomics: analyzing large-scale multi-locus genotype data / A. Lancaster ... [et al.] -- Joint bayesian estimation of mutation location and age using linkage disequilibrium / B. Rannala and J.P. Reeve -- SNP analysis and presentation in the pharmacogenetics of membrane transporters project / D. Stryke ... [et al.] --  
500 |a  - Methods for analysis and visualization of SNP genotype data for complex diseases / A. Tsalenko ... [et al.] 
500 |a Biomedical ontologies. Session introduction / O. Bodenreider, J.A. Mitchell, and A.T. McCray -- Functional discrimination of gene expression patterns in terms of the gene ontology / L. Badea -- Towards a broad-coverage biomedical ontology based on description logics / U. Hahn and S. Schulz -- Evaluation of ontology merging tools in bioinformatics / P. Lambrix and A. Edberg -- Semantic similarity measures as tools for exploring the gene ontology / P.W. Lord ... [et al.] -- Linking molecular imaging terminology to the gene ontology (GO) / P.K. Tulipano, W. Millar, and J.J. Cimino -- A methodology to migrate the gene ontology to a description logic environment using DAML + OIL / C.J. Wroe ... [et al.] -- Special paper. Introduction -- Development under extreme conditions: forensic bioinformatics in the wake of the World Trade Center disaster / H.D. Cash, J.W. Hoyle, and A.J. Sutton 
500 |a The Pacific Symposium on Biocomputing (PSB 2003) is an international, multidisciplinary conference for the presentation and discussion of current research in the theory and application of computational methods in problems of biological significance. The rigorously peer-reviewed papers and presentations are collected in this archival proceedings volume. PSB 2003 brings together top researchers from the US, the Asia-Pacific region and around the world to exchange research findings and address open issues in all aspects of computational biology. PSB is a forum for the presentation of work in databases, algorithms, interfaces, visualization, modeling and other computational methods, as applied to biological problems, with emphasis on applications in data-rich areas of molecular biology 
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650 4 |a Mathematisches Modell 
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Datensatz im Suchindex

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[et al.] -- Trajectory clustering: a non-parametric method for grouping gene expression time courses, with applications to mammary development / T.L. Phang ... [et al.] -- Algorithms for multiple genome rearrangement by signed reversals / S. Wu and X. Gu -- </subfield></datafield><datafield tag="500" ind1=" " ind2=" "><subfield code="a"> - DIGIT: a novel gene finding program by combining gene-finders / T. Yada ... [et al.] -- Linking biomedical language, information and knowledge. Session introduction / L. Hirschman ... [et al.] -- Evaluation of the vector space representation in text-based gene clustering / P. Glenisson ... [et al.] -- Playing biology's name game: identifying protein names in scientific text / D. Hanisch ... [et al.] -- Mining terminological knowledge in large biomedical corpora / H. Liu and C. Friedman -- A biological named entity recognizer / M. Narayanaswamy, K.E. Ravikumar, and K. Vijay-Shanker -- Linking biomedical language information and knowledge resources: GO and UMLS / I.N. Sarkar ... [et al.] -- A simple algorithm for identifying abbreviation definitions in biomedical text / A.S. Schwartz and M.A. Hearst -- Human genome variation: haplotypes, linkage disequilibrium, and populations. Session introduction / F.M. De La Vega, K.K. Kidd, and I.S. Kohane -- </subfield></datafield><datafield tag="500" ind1=" " ind2=" "><subfield code="a"> - Selection of minimum subsets of single nucleotide polymorphisms to capture haplotype block diversity / H.I. Avi-Itzhak, X. Su, and F.M. De La Vega -- On the power to detect SNP/phenotype association in candidate quantitative trait loci genomic regions: a simulation study / J.M. Comeron, M. Kreitman, and F.M. De La Vega -- Errors and linkage disequilibrium interact multiplicatively when computing sample sizes for genetic case-control association studies / D. Gordon ... [et al.] -- An MDL method for finding haplotype blocks and for estimating the strength of haplotype block boundaries / M. Koivisto ... [et al.] -- PyPop: a software framework for population genomics: analyzing large-scale multi-locus genotype data / A. Lancaster ... [et al.] -- Joint bayesian estimation of mutation location and age using linkage disequilibrium / B. Rannala and J.P. Reeve -- SNP analysis and presentation in the pharmacogenetics of membrane transporters project / D. Stryke ... [et al.] -- </subfield></datafield><datafield tag="500" ind1=" " ind2=" "><subfield code="a"> - Methods for analysis and visualization of SNP genotype data for complex diseases / A. Tsalenko ... [et al.]</subfield></datafield><datafield tag="500" ind1=" " ind2=" "><subfield code="a">Biomedical ontologies. Session introduction / O. Bodenreider, J.A. Mitchell, and A.T. McCray -- Functional discrimination of gene expression patterns in terms of the gene ontology / L. 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spelling Pacific Symposium on Biocomputing < 2003, Kauai, Hawaii> Verfasser aut
Pacific Symposium on Biocomputing 2003 Kauai, Hawaii, 3-7 January 2003 edited by Russ B. Altman ... [et al.]
Biocomputing 2003
Singapore World Scientific c2002
1 Online-Ressource (xvi, 653 p.)
txt rdacontent
c rdamedia
cr rdacarrier
Includes bibliographical references
Gene regulation. Session introduction / S. Batzoglou and L. Pachter -- Multiclass cancer classification using gene expression profiling and probabilistic neural networks / D.P. Berrar, C.S. Downes, and W. Dubitzky -- Inferring gene regulatory networks from time-ordered gene expression data of bacillus subtilis using differential equations / M.J.L. de Hoon ... [et al.] -- Genome-wide analysis of bacterial promoter regions / E. Eskin ... [et al.] -- MOPAC: motif finding by preprocessing and agglomerative clustering from microarrays / R. Ganesh, D.A. Siegele, and T.R. Ioerger -- Improved gene selection for classification of microarrays / J. Jaeger, R. Sengupta, and W.L. Ruzzo -- Kernel Cox regression models for linking gene expression profiles to censored survival data / H. Li and Y. Luan -- Extracting conserved gene expression motifs from gene expression data / T.M. Murali and S. Kasif -- Decomposing gene expression into cellular processes / E. Segal, A. Battle, and D. Roller --
- Genome, pathway, and interaction bioinformatics. Session Introduction / P. Karp ... [et al.] -- Suitability and utility of computational analysis tools: characterization of erythrocyte parameter variation / R.E. Altenbaugh, K.J. Kauffman, and J.S. Edwards -- Foundations of a query and simulation system for the modeling of biochemical and biological processes / M. Antoniotti ... [et al.] -- Incorporating biological knowledge into evaluation of causal regulatory hypotheses / L. Chrisman ... [et al.] -- Assessment of the reliability of protein-protein interactions and protein function prediction / M. Deng, F. Sun, and T. Chen -- Boundary formation by notch signaling in drosophila multicellular systems: experimental observations and gene network modeling by genomic object net / H. Matsuno ... [et al.] -- Influence of network topology and data collection on network inference / V.A. Smith, E.D. Jarvis, and A.J. Hartemink --
- Informatics approaches in structural genomics. Session introduction / S.D. Mooney and P.C. Babbit -- Simultaneous sequence alignment and tree construction using hidden Markov models / R.C. Edgar and K. Sjölander -- Towards discovering structural signatures of protein folds based on logical hidden Markov models / K. Kersting ... [et al.] -- Automated construction of structural motifs for predicting functional sites on protein structures / M.P. Liang, D.L. Brutlag, and R.B. Altman -- Prediction of boundaries between intrinsically ordered and disordered protein regions / P. Radivojac ... [et al.] -- Identifying structural motifs in proteins / R. Singh and M. Saha -- A path planning-based study of protein folding with a case study of hairpin formation in protein G and L / G. Song ... [et al.] -- Profile-profile alignment: a powerful tool for protein structure prediction / N. von Öhsen, I. Sommer, and R. Zimmer -- Protein threading by linear programming / J. Xu ... [et al.]
Genome-wide analysis and comparative genomics. Session introduction / L. Wei, I. Dubchak, and V. Solovyev -- Towards identifying lateral gene transfer events / L. Addario-Berry, M. Hallett, and J. Lagergren -- Whole genome human/mouse phylogenetic footprinting of potential transcription regulatory signals / E. Cheremushkin and A. Kel -- MAP: searching large genome databases / T. Kahveci and A. Singh -- Towards the development of computational tools for evaluating phylogenetic network reconstruction methods / L. Nakhleh ... [et al.] -- Identification of regulatory binding sites using minimum spanning trees / V. Olman, D. Xu, and Y. Xu -- Intrasplicing -- analysis of long intron sequences / S. Ott ... [et al.] -- Trajectory clustering: a non-parametric method for grouping gene expression time courses, with applications to mammary development / T.L. Phang ... [et al.] -- Algorithms for multiple genome rearrangement by signed reversals / S. Wu and X. Gu --
- DIGIT: a novel gene finding program by combining gene-finders / T. Yada ... [et al.] -- Linking biomedical language, information and knowledge. Session introduction / L. Hirschman ... [et al.] -- Evaluation of the vector space representation in text-based gene clustering / P. Glenisson ... [et al.] -- Playing biology's name game: identifying protein names in scientific text / D. Hanisch ... [et al.] -- Mining terminological knowledge in large biomedical corpora / H. Liu and C. Friedman -- A biological named entity recognizer / M. Narayanaswamy, K.E. Ravikumar, and K. Vijay-Shanker -- Linking biomedical language information and knowledge resources: GO and UMLS / I.N. Sarkar ... [et al.] -- A simple algorithm for identifying abbreviation definitions in biomedical text / A.S. Schwartz and M.A. Hearst -- Human genome variation: haplotypes, linkage disequilibrium, and populations. Session introduction / F.M. De La Vega, K.K. Kidd, and I.S. Kohane --
- Selection of minimum subsets of single nucleotide polymorphisms to capture haplotype block diversity / H.I. Avi-Itzhak, X. Su, and F.M. De La Vega -- On the power to detect SNP/phenotype association in candidate quantitative trait loci genomic regions: a simulation study / J.M. Comeron, M. Kreitman, and F.M. De La Vega -- Errors and linkage disequilibrium interact multiplicatively when computing sample sizes for genetic case-control association studies / D. Gordon ... [et al.] -- An MDL method for finding haplotype blocks and for estimating the strength of haplotype block boundaries / M. Koivisto ... [et al.] -- PyPop: a software framework for population genomics: analyzing large-scale multi-locus genotype data / A. Lancaster ... [et al.] -- Joint bayesian estimation of mutation location and age using linkage disequilibrium / B. Rannala and J.P. Reeve -- SNP analysis and presentation in the pharmacogenetics of membrane transporters project / D. Stryke ... [et al.] --
- Methods for analysis and visualization of SNP genotype data for complex diseases / A. Tsalenko ... [et al.]
Biomedical ontologies. Session introduction / O. Bodenreider, J.A. Mitchell, and A.T. McCray -- Functional discrimination of gene expression patterns in terms of the gene ontology / L. Badea -- Towards a broad-coverage biomedical ontology based on description logics / U. Hahn and S. Schulz -- Evaluation of ontology merging tools in bioinformatics / P. Lambrix and A. Edberg -- Semantic similarity measures as tools for exploring the gene ontology / P.W. Lord ... [et al.] -- Linking molecular imaging terminology to the gene ontology (GO) / P.K. Tulipano, W. Millar, and J.J. Cimino -- A methodology to migrate the gene ontology to a description logic environment using DAML + OIL / C.J. Wroe ... [et al.] -- Special paper. Introduction -- Development under extreme conditions: forensic bioinformatics in the wake of the World Trade Center disaster / H.D. Cash, J.W. Hoyle, and A.J. Sutton
The Pacific Symposium on Biocomputing (PSB 2003) is an international, multidisciplinary conference for the presentation and discussion of current research in the theory and application of computational methods in problems of biological significance. The rigorously peer-reviewed papers and presentations are collected in this archival proceedings volume. PSB 2003 brings together top researchers from the US, the Asia-Pacific region and around the world to exchange research findings and address open issues in all aspects of computational biology. PSB is a forum for the presentation of work in databases, algorithms, interfaces, visualization, modeling and other computational methods, as applied to biological problems, with emphasis on applications in data-rich areas of molecular biology
Biocomputer swd
Genanalyse swd
NATURE / Reference bisacsh
SCIENCE / Life Sciences / Biology bisacsh
SCIENCE / Life Sciences / General bisacsh
Biology / Computer simulation fast
Biology / Mathematical models fast
Molecular biology / Computer simulation fast
Molecular biology / Mathematical models fast
Mathematisches Modell
Biology Mathematical models Congresses
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(DE-588)1071861417 Konferenzschrift gnd-content
Altman, Russ Sonstige oth
http://search.ebscohost.com/login.aspx?direct=true&scope=site&db=nlebk&db=nlabk&AN=514371 Aggregator Volltext
spellingShingle Pacific Symposium on Biocomputing 2003 Kauai, Hawaii, 3-7 January 2003
Biocomputer swd
Genanalyse swd
NATURE / Reference bisacsh
SCIENCE / Life Sciences / Biology bisacsh
SCIENCE / Life Sciences / General bisacsh
Biology / Computer simulation fast
Biology / Mathematical models fast
Molecular biology / Computer simulation fast
Molecular biology / Mathematical models fast
Mathematisches Modell
Biology Mathematical models Congresses
Biology Computer simulation Congresses
Molecular biology Mathematical models Congresses
Molecular biology Computer simulation Congresses
subject_GND (DE-588)1071861417
title Pacific Symposium on Biocomputing 2003 Kauai, Hawaii, 3-7 January 2003
title_alt Biocomputing 2003
title_auth Pacific Symposium on Biocomputing 2003 Kauai, Hawaii, 3-7 January 2003
title_exact_search Pacific Symposium on Biocomputing 2003 Kauai, Hawaii, 3-7 January 2003
title_full Pacific Symposium on Biocomputing 2003 Kauai, Hawaii, 3-7 January 2003 edited by Russ B. Altman ... [et al.]
title_fullStr Pacific Symposium on Biocomputing 2003 Kauai, Hawaii, 3-7 January 2003 edited by Russ B. Altman ... [et al.]
title_full_unstemmed Pacific Symposium on Biocomputing 2003 Kauai, Hawaii, 3-7 January 2003 edited by Russ B. Altman ... [et al.]
title_short Pacific Symposium on Biocomputing 2003
title_sort pacific symposium on biocomputing 2003 kauai hawaii 3 7 january 2003
title_sub Kauai, Hawaii, 3-7 January 2003
topic Biocomputer swd
Genanalyse swd
NATURE / Reference bisacsh
SCIENCE / Life Sciences / Biology bisacsh
SCIENCE / Life Sciences / General bisacsh
Biology / Computer simulation fast
Biology / Mathematical models fast
Molecular biology / Computer simulation fast
Molecular biology / Mathematical models fast
Mathematisches Modell
Biology Mathematical models Congresses
Biology Computer simulation Congresses
Molecular biology Mathematical models Congresses
Molecular biology Computer simulation Congresses
topic_facet Biocomputer
Genanalyse
NATURE / Reference
SCIENCE / Life Sciences / Biology
SCIENCE / Life Sciences / General
Biology / Computer simulation
Biology / Mathematical models
Molecular biology / Computer simulation
Molecular biology / Mathematical models
Mathematisches Modell
Biology Mathematical models Congresses
Biology Computer simulation Congresses
Molecular biology Mathematical models Congresses
Molecular biology Computer simulation Congresses
Konferenzschrift
url http://search.ebscohost.com/login.aspx?direct=true&scope=site&db=nlebk&db=nlabk&AN=514371
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