Cancer genomics and proteomics methods and protocols

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Weitere Verfasser: Wajapeyee, Narendra (HerausgeberIn)
Format: Buch
Sprache:English
Veröffentlicht: New York [u.a.] Humana Press 2014
Ausgabe:2. ed.
Schriftenreihe:Methods in molecular biology 1176
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MARC

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adam_text Titel: Cancer genomics and proteomics Autor: Wajapeyee, Narendra Jahr: 2014 Contents Preface.......................................................... v Contributors.......................................................... ix 1 Genome-Wide Mapping of RNA Pol-II Promoter Usage in Mouse Tissues by ChlP-Seq......................................................................... 1 Sharmistba Pal, Ravi Gupta, and Ramana V. Davuluri 2 Using Native Chromatin Immunoprecipitation to Interrogate Histone Variant Protein Deposition in Embryonic Stem Cells........................... 11 Zito Tseng, Tao Wu, Tifei Liu, Mei Zhong, and Andrew Xiao 3 Reduced Representation Bisulfite Sequencing to Identify Global Alteration of DNA Methylation........................................................................ 23 Arvindhan Nagarajan, Christine Roden, and Narendra Wajapeyee 4 A High-Throughput MicroRNA Expression Profiling System........................... 33 Tanwen Guo, Stephen Mastriano, and Jun Lu 5 Using Pooled miR30-shRNA Library for Cancer Lethal and Synthetic Lethal Screens............................................................................ 45 Liam Changwoo Lee, Shaojian Gao, Qjuning Li, and Ji Luo 6 A Diphtheria Toxin Negative Selection in RNA Interference Screening............ 59 Zhi Sheng, Susan F. Murphy, Sujuan Guo, and Michael R. Green 7 Cancer Metabolism: Cross Talk Between Signaling and O-GlcNAcylation........ 73 Christina M. Ferrer and Mauricio J. Reginato 8 Targeted Genome Modification via Triple Helix Formation.............................. 89 Adele S. Ricciardi, Nicole A. McNeer, Kavitha K. Anandalingam, W. Mark Saltzman, and Peter M. Glazer 9 Synthesis of Stabilized Alpha-Helical Peptides.................................................. 107 Federico Bernai and Samuel G. Katz 10 Arginine-Grafted Biodegradable Polymer: A Versatile Transaction Reagent for both DNA and siRNA................................................................... 115 Jagadish Beloor, Hye Teong Nam, Sang-Kyung Lee, and Priti Kumar 11 Using LacO Arrays to Monitor DNA Double-Strand Break Dynamics in Live Schizosaccharomyces pombe Cells............................................. 127 Bryan A. Leland and Megan C. King 12* Zebrafish as a Platform to Study Tumor Progression........................................ 143 Corrie A. Painter and Craig J. Ceol 13 Clonal Screens to Find Modifiers of Partially Penetrant Phenotypes in C. elegans.................................................................................. 157 Michael E. Hurwitz vii viii Contents 14 Serum Profiling Using Protein Microarrays to Identify Disease Related Antigens.................................................................................. 169 Donald Sharon and Michael Snyder 15 Interrogation of In Vivo Protein-Protein Interactions Using Transgenic Mouse Models and Stable Isotope Labeling.......................... 179 Anwesha Dey, Jiansheng Wu, and Donald S. Kirkpatrick 16 New Biophysical Methods to Study the Membrane Activity of Bcl-2 Proteins................................................................................. 191 Stephanie Bleicken and Ana J. Garcia-Sdez 17 Purification of Recombinant 2XMBP Tagged Human Proteins from Human Cells........................................................................................... 209 Ryan Jensen 18 Computational Analysis in Cancer Exome Sequencing...................................... 219 Perry Evans, Yong Kong, and Michael Krauthammer 19 Matrix Factorization Methods for Integrative Cancer Genomics....................... 229 Shihua Zhang and Xianghong Jasmine Zhou 20 Computational Methods for DNA Copy-Number Analysis of Tumors.............. 243 Jude Kendall and Alexander Krasnitz Index...................................................................................................................... 261
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series Methods in molecular biology
series2 Methods in molecular biology
Springer protocols
spellingShingle Cancer genomics and proteomics methods and protocols
Methods in molecular biology
Genanalyse (DE-588)4200230-8 gnd
Krebs Medizin (DE-588)4073781-0 gnd
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title Cancer genomics and proteomics methods and protocols
title_auth Cancer genomics and proteomics methods and protocols
title_exact_search Cancer genomics and proteomics methods and protocols
title_full Cancer genomics and proteomics methods and protocols ed. by Narendra Wajapeyee
title_fullStr Cancer genomics and proteomics methods and protocols ed. by Narendra Wajapeyee
title_full_unstemmed Cancer genomics and proteomics methods and protocols ed. by Narendra Wajapeyee
title_short Cancer genomics and proteomics
title_sort cancer genomics and proteomics methods and protocols
title_sub methods and protocols
topic Genanalyse (DE-588)4200230-8 gnd
Krebs Medizin (DE-588)4073781-0 gnd
topic_facet Genanalyse
Krebs Medizin
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