Transcription factor regulatory networks methods and protocols
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| Format: | Buch |
| Sprache: | English |
| Veröffentlicht: |
New York, NY [u.a.]
Humana Press
2014
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| Schriftenreihe: | Methods in molecular biology
1164 |
| Online-Zugang: | Inhaltsverzeichnis |
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Datensatz im Suchindex
| _version_ | 1819676599511941120 |
|---|---|
| adam_text | Titel: Transcription factor regulatory networks
Autor: Miyamoto-Sato, Etsuko
Jahr: 2014
Contents
Preface.......................................................... v
Contributors.......................................................... ix
1 Detecting Protein-Protein Interactions/Complex Components
Using Mass Spectrometry Coupled Techniques........................ 1
Zhibin Ning, Brett Hawley, Cheng-Kang Chiang, Deeptee Seebun,
and Daniel Figeys
2 Analysis of Transcription Factor Networks Using IW Method............ 15
Hiroyuki Ohashi, Shigeo Fujimori, Naoya Hirai,
Hiroshi Tanagawa, and Etsuko Miyamoto-Sato
3 Next-Generation Sequencing Coupled with a Cell-Free Display
Technology for Reliable Interactome of Translational Factors............. 23
Etsuko Miyamoto-Sato
4 Chromatin Immunoprecipitation Protocol for Mammalian Cells........... 33
Makiko Komata, Tuki Katou, Hiroshi Tanaka, Ryuichiro Nakato,
Katsuhiko Shirahige, and Masashige Bando
5 Detecting Protein-DNA Interactions Using a Modified Yeast
One-Hybrid System............................................ 39
Kazuhisa Ota, Shu-Ting Feng, and Takashi Ito
6 RNA Sequencing: From Sample Preparation to Analysis................. 51
Sho Maekawa, Ayako Suzuki, Sumio Sugano, and Tutaka Suzuki
7 Detecting Expressed Genes Using CAGE............................ 67
Mitsuyoshi Murata, Hiromi Nishiyori-Sueki, Miki Kojima-Ishiyama,
Fiero Carninci, Toshihide Hayashizaki, and Masayoshi Itoh
8 A Tutorial to Identify Nonlinear Associations in Gene
Expression Time Series Data...................................... 87
André Fujita and Satoru Miyano
9 Inference of TFRNs (2)......................................... 97
Hideo Matsuda
10 Identification of the Minimal Connected Network of Transcription
Factors by Transcriptomic and Genomic Data Integration................ 109
Ahmed Essaghir
11 Modeling and Simulation Using CellDesigner......................... 121
Tukiko Matsuoka, Akira Funahashi, Samik Ghosh, and Hiroaki Kitano
12 Human Genome Network Platform: A Resource for TFRN Analysis........ 147
Norikazu Monma, Takashi Gojobori, and Kazuho Ikeo
vii
viii
Contents
13 Identification of Transcription Factors Activated in Thymic Epithelial
Cells During Embryonic Thymus Development....................... 163
Taishin Akiyama, Junwen Qin, Daisuke Ohshima, and Jun-ichiro Inoue
14 Analysis of NFATcl-Centered Transcription Factor Regulatory Networks
in Osteoclast Formation......................................... 171
Masahiro Shinohara and Hiroshi Takayanagi
15 Transcriptional Regulation in Adipogenesis Through PPARy-Dependent
and -Independent Mechanisms by Prostaglandins...................... 177
Ko Fujimori and Yoshihiro Urade
16 Analysis of TFRNs Associated with Steroid Hormone-Related Cancers...... 197
Kazuhiro Ikeda, Kuniko Horie-Inoue, and Satosbi Inoue
17 Repositioning Monocyte TFRN into Fibroblasts....................... 211
Takahiro Suzuki, Jay W Shin, and Harukazu Suzuki
Index............................................................... 219
|
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| illustrated | Illustrated |
| indexdate | 2024-12-24T04:12:03Z |
| institution | BVB |
| language | English |
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| physical | XI, 220 S. Ill., graph. Darst. |
| publishDate | 2014 |
| publishDateSearch | 2014 |
| publishDateSort | 2014 |
| publisher | Humana Press |
| record_format | marc |
| series | Methods in molecular biology |
| series2 | Methods in molecular biology Springer protocols |
| spellingShingle | Miyamoto-Sato, Etsuko Transcription factor regulatory networks methods and protocols Methods in molecular biology |
| title | Transcription factor regulatory networks methods and protocols |
| title_auth | Transcription factor regulatory networks methods and protocols |
| title_exact_search | Transcription factor regulatory networks methods and protocols |
| title_full | Transcription factor regulatory networks methods and protocols ed. by Etsuko Miyamoto-Sato ... |
| title_fullStr | Transcription factor regulatory networks methods and protocols ed. by Etsuko Miyamoto-Sato ... |
| title_full_unstemmed | Transcription factor regulatory networks methods and protocols ed. by Etsuko Miyamoto-Sato ... |
| title_short | Transcription factor regulatory networks |
| title_sort | transcription factor regulatory networks methods and protocols |
| title_sub | methods and protocols |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=027475883&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
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