Homing endonucleases methods and protocols

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Veröffentlicht: New York [u.a.] Humana Press 2014
Schriftenreihe:Methods in molecular biology 1123
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adam_text Contents Preface .......................................................... v Contributors .......................................................... ix 1 Homing Endonucleases: From Genetic Anomalies to Programmable Genomic Clippers ................................ 1 Marlene Belfort and Richard P. Bonocora 2 Bioinformatic Identification of Homing Endonucleases and Their Target Sites ........................................... 27 Eyal Privman 3 PCR-Based Bioprospecting for Homing Endonucleases in Fungal Mitochondrial rRNA Genes ............................... 37 Mohamed Hafez, Tuhin Kumar Guha, Chen Shen, Jyothi Sethuraman, and Georg Hausner 4 Mapping Homing Endonuclease Cleavage Sites Using In Vitro Generated Protein ....................................... 55 Richard P. Bonocora and Marlene Belfort 5 Mapping Free-Standing Homing Endonuclease Promoters Using 5 RLM-RACE ........................................... 69 Ewan A. Gibb 6 PCR Analysis of Chloroplast Double-Strand Break (DSB) Repair Products Induced by I-Crell in Chlamydomonas and Arabidopsis .......... 77 Taegun Kwon, Obed W. Odom, Weihua Qiu, and David L· Herrin 7 A Two-Plasmid Bacterial Selection System for Characterization and Engineering of Homing Endonucleases .......................... 87 Шца Sun and Huimin Zhao 8 Rapid Screening of Endonuclease Target Site Preference Using a Modified Bacterial Two-Plasmid Selection ..................... 97 Jason M. Wolfi, Benjamin P. Kleinstiver, and David R. Edgell 9 A Yeast-Based Recombination Assay for Homing Endonuclease Activity ..... 105 Jean-Charles Epinat 10 Rapid Determination of Homing Endonuclease DNA Binding Specificity Profile ........................................ 127 Lei Zhao and Barry L. Stoddard 11 Quantifying the Information Content of Homing Endonuclease Target Sites by Single Base Pair Profiling ............................. 135 Joshua I. Friedman, Hut Li, and Raymond J. Monnatjr. viii Contents 12 Homing Endonuclease Target Site Specificity Defined by Sequential Enrichment and Next-Generation Sequencing of Highly Complex Target Site Libraries ............................. 151 Hui Li and Raymond J. Monnatjr. 13 Homing Endonuclease Target Determination Using SELEX Adapted for Yeast Surface Display .................................. 165 KyUJacoby and Andrew M. Scharenberg 14 Engineering and Flow-Cytometric Analysis of Chimeric LAGLIDADG Homing Endonucleases from Homologous I-Onul-Family Enzymes ........ 191 Sarah K. Baxter, Andrew M. Scharenberg, and Abigail R. Lambert 15 Bioinformatics Identification of Coevolving Residues ................... 223 Russell J. Dickson and Gregory B. Gloor 16 Identification and Analysis of Genomic Homing Endonuclease Target Sites ........................................ 245 Stefan Pellenz and Raymond J. Monnatjr. 17 Redesigning the Specificity of Protein-DNA Interactions with Rosetta ...... 265 Summer Thyme and David Baker Index ............................................................... 283 Methods in Molecular Biology 1123 John M, Walker, Seríes Editor David R. Edgelí Editor Homing Endonucleases Methods and Protocols Homing Endonucleases: Methods and Protocols aims at providing molecular biologists with a comprehensive resource to identify and characterize homing endonucleases from genomic sequence» to deduce the biological basis of binding and cleavage specificity, as well as to provide protocols to redesign endonuclease target specificity for genome-editing applications. Engineer¬ ing of designer homing endonucleases has set the stage for genome editing of complex eukary- otic genomes with a broad range of potential applications including targeted gene knockouts in model organisms and gene therapy in humans, making this book a valuable resource for future research. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoid¬ ing known pitfalls. Authoritative and practical, Homing Endonucieases: Methods ana Proto coh serves as â key refer¬ ence for all kbs studying site-specific DNA endonucleases.
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spelling Homing endonucleases methods and protocols ed. by David R. Edgell
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spellingShingle Homing endonucleases methods and protocols
Methods in molecular biology
Endonucleasen (DE-588)4152179-1 gnd
Labortechnik (DE-588)4123602-6 gnd
subject_GND (DE-588)4152179-1
(DE-588)4123602-6
(DE-588)4143413-4
title Homing endonucleases methods and protocols
title_auth Homing endonucleases methods and protocols
title_exact_search Homing endonucleases methods and protocols
title_full Homing endonucleases methods and protocols ed. by David R. Edgell
title_fullStr Homing endonucleases methods and protocols ed. by David R. Edgell
title_full_unstemmed Homing endonucleases methods and protocols ed. by David R. Edgell
title_short Homing endonucleases
title_sort homing endonucleases methods and protocols
title_sub methods and protocols
topic Endonucleasen (DE-588)4152179-1 gnd
Labortechnik (DE-588)4123602-6 gnd
topic_facet Endonucleasen
Labortechnik
Aufsatzsammlung
url http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=027160087&sequence=000003&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA
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