Genetics and evolution of infectious diseases
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| Format: | Buch |
|---|---|
| Sprache: | English |
| Veröffentlicht: |
Amsterdam [u.a.]
Elsevier
2011
|
| Ausgabe: | 1. ed. |
| Schriftenreihe: | Elsevier insights
|
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
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| 015 | |a GBB094843 |2 dnb | ||
| 020 | |a 9780123848901 |c hbk. |9 978-0-12-384890-1 | ||
| 020 | |a 0123848903 |c hbk. |9 0-12-384890-3 | ||
| 035 | |a (OCoLC)785849779 | ||
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| 245 | 1 | 0 | |a Genetics and evolution of infectious diseases |c edited by Michel Tibayrenc |
| 250 | |a 1. ed. | ||
| 264 | 1 | |a Amsterdam [u.a.] |b Elsevier |c 2011 | |
| 300 | |a xxii, 749 p. |b Ill., graph. Darst., Kt. |c 24 cm | ||
| 336 | |b txt |2 rdacontent | ||
| 337 | |b n |2 rdamedia | ||
| 338 | |b nc |2 rdacarrier | ||
| 490 | 0 | |a Elsevier insights | |
| 500 | |a Weitere Ausgabe: Genetics and evolution of infectious diseases | ||
| 500 | |a Includes bibliographical references | ||
| 650 | 4 | |a Communicable diseases |x Genetic aspects | |
| 650 | 4 | |a Disease susceptibility |x Genetic aspects | |
| 650 | 4 | |a Infection |x Genetic aspects | |
| 650 | 4 | |a Communicable Diseases |x genetics | |
| 650 | 4 | |a Communicable Diseases, Emerging |x genetics | |
| 650 | 4 | |a Genetic Predisposition to Disease | |
| 650 | 4 | |a Genetic Variation |x immunology | |
| 650 | 0 | 7 | |a Genetik |0 (DE-588)4071711-2 |2 gnd |9 rswk-swf |
| 650 | 0 | 7 | |a Evolution |0 (DE-588)4071050-6 |2 gnd |9 rswk-swf |
| 650 | 0 | 7 | |a Infektionskrankheit |0 (DE-588)4026879-2 |2 gnd |9 rswk-swf |
| 689 | 0 | 0 | |a Infektionskrankheit |0 (DE-588)4026879-2 |D s |
| 689 | 0 | 1 | |a Evolution |0 (DE-588)4071050-6 |D s |
| 689 | 0 | |5 DE-604 | |
| 689 | 1 | 0 | |a Infektionskrankheit |0 (DE-588)4026879-2 |D s |
| 689 | 1 | 1 | |a Genetik |0 (DE-588)4071711-2 |D s |
| 689 | 1 | |5 DE-604 | |
| 700 | 1 | |a Tibayrenc, Michel |e Sonstige |4 oth | |
| 856 | 4 | 2 | |m Digitalisierung UB Regensburg |q application/pdf |u http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=024813227&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |3 Inhaltsverzeichnis |
| 943 | 1 | |a oai:aleph.bib-bvb.de:BVB01-024813227 | |
Datensatz im Suchindex
| _version_ | 1819658683389313024 |
|---|---|
| adam_text | Contents
List of Contributors
xiii
Preface
xix
Introduction
xxi
Michel Tibayrenc
Part
1
Methodological/Generalist Chapters
1
1
Virus Species
3
More H. V. Van Reaenmortei
1.1
The Species Problem in Biology
3
1.2
Classes Versus Individuals
4
1.3
Species
Taxa as
Cluster Classes
4
1.4
Species: Concrete Versus Abstract Entities
5
1
.5
The Nature of Viruses
6
1.6
Viruses Should not be Reduced to
Virions
6
J.
7
What is a Virus Species?
8
1.8
Species and Quasi-Species
9
1
.9
Definition of Virus Species Versus identification of Viruses
9
1.10
Using Viral Genomes to Define Virus Species
10
ł
. 11
Names and Typography of Virus Species
12
2
A Theory-Based Pragmatism for Discovering and Classifying
Newly Divergent Bacterial Species
21
Sarah Kopac and Frederick M. Cohan
2.1
Introduction
21
2.2
Ecological Breadth of Recognized Species
24
2.3
Models of Bacterial Speciation
27
2.4
Algorithms for Identifying Ecotypes
31
2.5
Confirming the Ecological Distinctness of Ecotypes
32
2.6
Ecological Homogeneity within Ecotypes
34
2.7
Are Bacterial Ecotypes Cohesive?
35
2.8
Incorporating Ecology into Bacterial Systematics
36
3
Population Structure of Pathogenic Bacteria
43
D. Ashley Robinson, Jonathan C. Thomas and William P. Manage
3.1
Introduction
43
3.2
Bacterial
Population
Structure by Other Means
44
Contents
3.3
What, if Anything, is a Bacterial Population?
48
3.4
Conclusions
52
Epidemiology and Evolution of Fungal Pathogens in
Plants and Animals
59
Pierre Gladieux,
Edmond
J.
Byrnes HI,
Gabriela
Aguileta,
Matthew C. Fisher, Joseph Heitman and
Tatiana
Giraud
4.1
Introduction
59
4.2
Major Human and Animal Pathogenic Fungi
61
4.3
New and Emerging Mycoses
64
4.4
Plant Pathogenic Fungi
70
4.5
New and Emerging Plant Diseases
72
4.6
Modern Molecular
Epidemiologie
Tools for Investigating
Fungal Diseases
74
4.7
Population Genetics of Pathogenic Fungi
78
4.8
Species and Speciation in Pathogenic Fungi
94
4.9
Mating and Pathogenesis
99
4.10
Genomics of Fungi: What makes a Fungus Pathogenic?
102
4.11
Conclusion
106
Clonal Evolution
133
Thierry
de Meeûs
and
Franck Prugnolle
5.1
Introduction
133
5.2
Definitions
134
5.3
The Origin of Life, the Origin of Propagation and
Recombination
135
5.4
Clonal Modes
136
5.5
Quantifying the Importance of Asexuality in the Biosphere
137
5.6
Genetic Consequences of Asexuality
137
5.7
Evolution and the Paradox of Sex
138
5.8
Clonal
Microevolution 140
5.9
Conclusions
143
Coevolution of Host and Pathogen
147
Andrew D. Morgan and
Britt Koskella
6.1
Coevolution of Host and Pathogen
147
6.2
The Process of Antagonistic Coevolution
153
6.3
Testing for Host-Pathogen Coevolution
156
6.4
Implications of Coevolution
162
6.5
Summary/Future Outlook
163
Elucidating Human Migrations by Means of their Pathogens
173
Aude
Gilabert and Thierry
Wirth
7.1
Introduction
173
7.2
Using Pathogens as Genetic Tracers for Host History
174
7.3
Candidates
7.4
Conclusion
Phylogenetic Analysis of Pathogens
David A. Morrison
8.1
Introduction
8.2
The Uses of Phylogenies
8.3
The Logic of Phylogeny Reconstruction
8.4
Characters and Samples
8.5
The Practice of Phylogeny Reconstruction
8.6
Choosing a Method
8.7
Phylogenetic Trees
8.8
Phylogenetic Networks
Contents
vii
176
193
203
203
204
206
208
212
217
219
223
9
Evolutionary Responses to Infectious Disease
233
Gregory Cochran and Henry Harpending
9.1
Introduction
233
9.2
Parasites as Our Friends
234
9.3
Demography and Parasites
235
9.4
Agriculture
236
9.5
Some Lessons from Malaria
237
9.6
Disease and Standard of Living in Preindustrial Societies:
A Simple Model
240
9.7
Population Limitation
241
9.8
Disease, Mating, and Reproductive Strategy
244
9.9
Prosperity and the
Postindustrial
Era Mortality Decline
245
10
Infectious Disease Genomics
249
Yu-Tsueng Liu
10.1
Introduction
249
10.2
Vaccine Target
251
10.3
Drug Target
253
10.4
Vector Control
253
10.5
Diagnostic Target and Pathogen Discovery
254
10.6
Conclusion
255
11
Proteomics and Host—Pathogen Interactions: A Bright Future?
263
David G. Biron, Dobrin Nedelkov, Dorothe e
Misse
and
Philippe Holzmuller
11.1
Introduction
263
11.2
Interest of Proteomics to Study Host—Pathogen Interactions
264
11.3
Retrospective Analysis of Previous Proteomics Studies
265
11.4
Pitfalls of the Current Conceptual Approach in many
Parasi
to-Proteomics Studies
271
viii Contents
11.5
Toward New Conceptual Approaches to Decipher the
Host—Parasite Interactions for Parasites with Short or
Complex Life Cycle
272
11.6
Population Proteomics, an Emerging Discipline, to Study
Host—Parasite Interactions
278
11.7
5-Year View
286
11.8
Conclusion
289
Glossary
290
12
The Evolution of Antibiotic Resistance
305
Fernando Gonzdlez-Candelas,
Inaia
Comas, Jose Luis Martinez,
Juan Carlos
Galan
and Fernando Baquero
12.1
Introduction
305
12.2
Mechanisms and Sources of Antibiotic Resistance
309
12.3
Evolution of Antibiotic-Resistance Genes
314
12.4
Limitations to Adaptation and the Cost of Resistance
320
12.5
Can the Evolution of Antibiotic Resistance be Predicted?
326
12.6
Conclusions and Perspectives
327
Glossary
328
13
General Mechanisms of Antiviral Resistance
339
Anthony
Vere
Hodge and Hugh J. Field
13.1
Introduction
339
13.2
Evolutionary Outcomes that have Enabled Viruses to
Resist Control
343
13.3
One Principle Mechanism for Development of Resistance
346
13.4
Viruses with Segmented Genomes: Additional Resistance
Mechanism
347
13.5
Evolution of Resistant Mutants
347
13.6
Illustrative Examples of Resistance to Specific Antiviral Drags
348
13.7
Optimizing Drug Combinations to Avoid Resistance
353
13.8
Unexpected Consequences of Resistance Mutations
355
13.9
A Role for Compounds Targeting Host Proteins for Antiviral
Therapy
357
13.10
Conclusion
358
14
Evolution of Resistance to Insecticide in Disease Vectors
363
Pierrick
Labbe , Haoues Alout, Luc Djogbe nou, Nicole Pasteur and
Myle ne Weill
14.1
Introduction
363
14.2
Part
1:
Insecticide Resistance: Definition and History
365
14.3
Part
2:
Mechanisms of Resistance
371
14.4
Part
3:
Treatment Practices and Resistance
Management Strategies
386
14.5
Conclusion
393
Contents ix
15
Genetics of Major Insect Vectors
411
Patricia
L
Dorn,
François
Noireau, Elliot
S.
Krafsur,
Gregory C. Lanzaro and Anthony J. Cornel
15.1
Introduction
411
15.2
Genetics of Tsetse Flies,
Glossina spp. (Diptera: Glossinidae),
and African Trypanosomiasis
412
15.3
Genetics of the Triatominae (Hemiptera, Reduviidae) and
Chagas
Disease
426
15.4
The Anopheles gambiae Complex
446
Glossary
459
16
Modern Morphometrics of Medically Important Insects
473
Jean-Pierre Dujardin
16.1
Introduction
473
16.2
Landmark-Based Geometric Morphometry
474
16.3
Nonenvironmental Sources of Metric Change
477
16.4
Environmental Sources of Metric Changes
480
16.5
The Regulation of Phenotype
483
16.6
Applications in Medical Entomology
485
16.7
Conclusion
494
17
Multilocus Sequence Typing of Pathogens
503
Marcos
Pérez-Losada,
Megan
L
Porter, Raphael P.
Viscidi
and Keith A.
Crandall
17.1
Introduction
503
17.2
Molecular Design and Development of MLST
504
17.3
MLST Databases
508
17.4
Advantages and Disadvantages of MLST
508
17.5
Analytical Approaches
510
17.6
Applications of MLST
514
17.7
Conclusions and Prospects
517
18
Omics, Bioinformatics, and Infectious Disease Research
523
Konrad
H.
Paszkiewicz and Mark van
der G
ie
ze n
18.1
The Need for Bioinformatics
523
18.2
Metagenomics
524
18.3
Comparative Genomics
525
18.4
Pan-Genomics
528
18.5
Transcriptomics
529
18.6
Proteomics
531
18.7
Structural Genomics/Proteomics
532
18.8
A How-To of Second-Generation Sequencing
533
18.9
Alignment or Assembly of Second-generation Sequences
534
18.10
Concluding Remarks
536
Contents
19 Genomics
of Infectious Diseases and Private Industry
541
Guy
Vernét
19.1
Introduction
541
19.2
Customers and Their Needs
542
19.3
Technologies and Companies
545
19.4
Conclusion and Perspectives
551
20
Current Progress in the Pharmacogenetics of Infectious
Disease Therapy
555
Tabitha Mahungu and Andrew Owen
20.1
Introduction
555
20.2
The Role of Pharmacogenetics in Communicable Diseases
556
20.3
Strategies for Investigating New Pharmacogenetic Associations
556
20.4
Implementation of Pharmacogenetics
558
20.5
Pharmacogenetics of
HIV
Therapy
560
20.6
Pharmacogenetics of Antimalarial Therapy
566
20.7
Pharmacogenetics of
Antituberculosis
Therapy
568
20.8
Summary and Perspective
568
Part
2
Specialized Chapters
579
21
Genetic Exchange in Trypanosomatids and Its Relevance to
Epidemiology
581
Wendy Gibson, Michael D. Lewis and Michael Miles
21.1
Introduction
581
21.2
Trypanosoma brucei
582
21.3
Trypanosoma
cruzi
588
21.4
Leishmania
596
22
Genomic Insights into the Past, Current and Future Evolution of
Human Parasites of the Genus Plasmodium
607
Colin J. Sutherland and Spencer D. Polley
22.1
Introduction
607
22.2
Evolution of Plasmodium: The Past
10
Million Years
614
22.3
Evolution of Plasmodium: The Twenty-First Century in Three
Courses
621
22.4
Evolution of Plasmodium and the Eradication Agenda
627
23
Integrated Genetic Epidemiology of
Chagas
Disease
637
Michel Tibayrenc, Jenny
Teileria,
Patricio Diosque,
Juan Carlos Dib and Christian
Barnabe
23.1
What Is Integrated Genetic Epidemiology?
637
23.2
Chagas
Disease: A Major Health Problem in Latin America and
Other Countries
538
23.3
The
Chagas
Disease Cycle
638
Contents xi
23.4
Host Genetic Susceptibility to
Chagas
Disease
639
23.5
Vector Genetic Diversity
643
23.6
Parasite Genetic Diversity
643
23.7
Concluding Remarks
645
Glossary
645
24
The Rise and Fall of the Mycobacterium tuberculosis Complex
651
Marcel A. Behr and
S. Sebastien Cagneux
24.1
Overview
651
24.2
Mycobacterium tuberculosis Complex: Definitions and
Epidemiology
652
24.3
The Mycobacterium Genus
653
24.4
Mycobacterium tuberculosis Complex Evolution
657
24.5
Pending Questions and Concluding Thoughts
661
Glossary
663
25
The Evolution and Dynamics of Methicillin-Resistant Staphylococcus
aureus
669
Patrick Basset, Edward J.
Feil,
Giorgio Zanetti and
Dominique S. Blanc
25.1
Introduction
669
25.2
The Staphylococcal Cassette Chromosome
mec
670
25.3
Molecular Epidemiology of
MRSA
672
25.4
Evolution of Staphylococcus aureus and
MRSA
677
25.5
Conclusion
681
26
Origin and Emergence of HIV/AIDS
689
Lucie Etienne, Eric Delaporte
and
Martine
Peelers
26.1
History of AIDS
689
26.2 HIV
Is Closely Related to Simian Immunodeficiency Viruses
(SIV)
from Nonhuman Primates
691
26.3
HIV-1 Is Derived from SIVs Circulating among African Apes
695
26.4
Origin of HIV-2: An Other Emergence, an Other Epidemic
700
26.5
Ongoing Exposure of Humans to a Large Diversity of SIVs:
Risk for a Novel
HIV? 701
26.6
Conclusion
704
27
Evolution of SARS
Coronavirus
and the Relevance of Modern
Molecular Epidemiology
711
Zhengli Shi and Lin-Fa Wang
27.1
A Brief History of SARS
711
27.2
SARS
Coronavirus
713
27.3
The Animal Link
716
27.4
Natural Reservoirs of SARS-CoV
717
27.5
Molecular Evolution of SARS-CoV in Humans and Animals
719
xii Contents
27.6
Virus Surveillance in Wild Animals
723
27.7
Concluding Remarks
724
28
Ecology and Evolution of Avian Influenza Viruses
729
Josanne
H.
Verhagen,
Vincent J. Munster
and Ron A.M. Fouchier
28.1
Introduction to Influenza A Virus
729
28.2
Influenza Viruses in Birds
732
28.3
Evolutionary Genetics of Avian Influenza Viruses
738
28.4
Future Perspective
743
|
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| bvnumber | BV039955376 |
| callnumber-first | R - Medicine |
| callnumber-label | RC112 |
| callnumber-raw | RC112 |
| callnumber-search | RC112 |
| callnumber-sort | RC 3112 |
| callnumber-subject | RC - Internal Medicine |
| classification_rvk | YD 1400 |
| ctrlnum | (OCoLC)785849779 (DE-599)BVBBV039955376 |
| dewey-full | 616.9042 |
| dewey-hundreds | 600 - Technology (Applied sciences) |
| dewey-ones | 616 - Diseases |
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| dewey-search | 616.9042 |
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| dewey-tens | 610 - Medicine and health |
| discipline | Medizin |
| edition | 1. ed. |
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| id | DE-604.BV039955376 |
| illustrated | Illustrated |
| indexdate | 2024-12-24T02:35:33Z |
| institution | BVB |
| isbn | 9780123848901 0123848903 |
| language | English |
| lccn | 2011281155 |
| oai_aleph_id | oai:aleph.bib-bvb.de:BVB01-024813227 |
| oclc_num | 785849779 |
| open_access_boolean | |
| owner | DE-355 DE-BY-UBR |
| owner_facet | DE-355 DE-BY-UBR |
| physical | xxii, 749 p. Ill., graph. Darst., Kt. 24 cm |
| publishDate | 2011 |
| publishDateSearch | 2011 |
| publishDateSort | 2011 |
| publisher | Elsevier |
| record_format | marc |
| series2 | Elsevier insights |
| spellingShingle | Genetics and evolution of infectious diseases Communicable diseases Genetic aspects Disease susceptibility Genetic aspects Infection Genetic aspects Communicable Diseases genetics Communicable Diseases, Emerging genetics Genetic Predisposition to Disease Genetic Variation immunology Genetik (DE-588)4071711-2 gnd Evolution (DE-588)4071050-6 gnd Infektionskrankheit (DE-588)4026879-2 gnd |
| subject_GND | (DE-588)4071711-2 (DE-588)4071050-6 (DE-588)4026879-2 |
| title | Genetics and evolution of infectious diseases |
| title_auth | Genetics and evolution of infectious diseases |
| title_exact_search | Genetics and evolution of infectious diseases |
| title_full | Genetics and evolution of infectious diseases edited by Michel Tibayrenc |
| title_fullStr | Genetics and evolution of infectious diseases edited by Michel Tibayrenc |
| title_full_unstemmed | Genetics and evolution of infectious diseases edited by Michel Tibayrenc |
| title_short | Genetics and evolution of infectious diseases |
| title_sort | genetics and evolution of infectious diseases |
| topic | Communicable diseases Genetic aspects Disease susceptibility Genetic aspects Infection Genetic aspects Communicable Diseases genetics Communicable Diseases, Emerging genetics Genetic Predisposition to Disease Genetic Variation immunology Genetik (DE-588)4071711-2 gnd Evolution (DE-588)4071050-6 gnd Infektionskrankheit (DE-588)4026879-2 gnd |
| topic_facet | Communicable diseases Genetic aspects Disease susceptibility Genetic aspects Infection Genetic aspects Communicable Diseases genetics Communicable Diseases, Emerging genetics Genetic Predisposition to Disease Genetic Variation immunology Genetik Evolution Infektionskrankheit |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=024813227&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| work_keys_str_mv | AT tibayrencmichel geneticsandevolutionofinfectiousdiseases |