Yeast systems biology methods and protocols
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| Format: | Buch |
|---|---|
| Sprache: | English |
| Veröffentlicht: |
New York [u.a.]
Humana Press
2011
|
| Schriftenreihe: | Methods in molecular biology
759 |
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
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MARC
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| 245 | 1 | 0 | |a Yeast systems biology |b methods and protocols |c ed. by J. I. Castrillo ... |
| 264 | 1 | |a New York [u.a.] |b Humana Press |c 2011 | |
| 300 | |a XIV, 535 S. |b Ill., graph. Darst. | ||
| 336 | |b txt |2 rdacontent | ||
| 337 | |b n |2 rdamedia | ||
| 338 | |b nc |2 rdacarrier | ||
| 490 | 1 | |a Methods in molecular biology |v 759 | |
| 490 | 0 | |a Springer protocols | |
| 500 | |a Literaturangaben | ||
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| 943 | 1 | |a oai:aleph.bib-bvb.de:BVB01-024420818 | |
Datensatz im Suchindex
| DE-BY-TUM_call_number | 1002 BIO 260f 2015 B 1497 |
|---|---|
| DE-BY-TUM_katkey | 2138112 |
| DE-BY-TUM_location | 10 |
| DE-BY-TUM_media_number | 040008087165 |
| _version_ | 1820852448729759744 |
| adam_text | Contents
Preface
..........................................
v
Contributors
....................................... xi
Section I: Yeast Systems Biology
1.
Yeast Systems Biology: The Challenge of Eukaryotic Complexity
......... 3
Juan I. Castrillo and Stephen G. Oliver
Section II: Experimental Systems Biology: High-Throughput Genome-Wide
and Molecular Studies
2.
Saccharomyces cerevisiae: Gene Annotation and Genome Variability, State
of the Art Through Comparative Genomics
.................... 31
Ed Louis
3.
Genome-Wide Measurement of Histone H3 Replacement Dynamics in Yeast
. . 41
Oliver J. Rando
4.
Genome-Wide Approaches to Studying Yeast Chromatin Modifications
..... 61
Dustin E.
Schönes, Kairong
Cui,
and Suresh Cuddapah
5.
Absolute and Relative Quantification of mRNA Expression (Transcript Analysis)
. 73
Andrew Hayes, Bharat M. Rash, and
Leo
A.H.
Zeef
6.
Enrichment of Unstable Non-coding RNAs and Their Genome-Wide
Identification
................................... 87
Helen Neil and Alain
Jacquier
7.
Genome-Wide
Transcriptome
Analysis in Yeast Using High-Density
Tiling Arrays
...................................107
Lior David, Sandra Clauder-Miinster, and Lars M.
Steinmetz
8.
RNA
Sequencing
.................................125
Karí
Waern, Ugrappa
Nagalabhmi,
and Michael
Snyder
9.
Polyadenylation
State Microarray (PASTA) Analysis
...............133
Trawie
H.
Beilharz and Thomas Preiss
10.
Enabling
Technologies
for Yeast Proteome Analysis
................149
Jobanna
Rees
and Katbryn Lilley
11.
Protein Turnover Methods in Single-Celled Organisms: Dynamic
SILĄC
.... 179
Amy
J.
Claydon and Robert J. Beynon
12.
Protein-Protein Interactions and Networks: Forward and Reverse Edgedcs
. . . 197
Benoit
Charlouaux, Quan
Zhonß,
Mattja
Dreze,
Michael
E. Cusick,
David
E. HUL,
and
Marc Vidai
viii Contents
13.
Use of Proteome Arrays to Globally Identify Substrates for E3
Ubiquitin
Ligases
.................................215
Avinash
Persaud
and
Daniela
Rotin
14.
Fit-for-Purpose Quenching and Extraction Protocols for Metabolic
Profiling of Yeast Using Chromatography-Mass Spectrometry Platforms
.....225
Catherine
L
Winder and Warwick B. Dunn
15.
The Automated Cell: Compound and Environment Screening System
(ACCESS) for Chemogenomic Screening
.....................239
Michael Proctor,
Malene
L·
Urbánus,
Eula
L·
tung,
Daniel
F.
Jaramillo, Ronald W.
Davis, Corey Nislow,
and
Guri
Giaever
16.
Competition
Experiments
Coupled with High-Throughput Analyses for
Functional Genomics Studies in Yeast
.......................271
Daniela Delneri
17.
Fluorescence Fluctuation Spectroscopy and Imaging Methods for
Examination of Dynamic Protein Interactions in Yeast
..............283
Brian D. Slaughter, Jay R.
Unruh,
and Rong Li
18.
Nutritional Control of Cell Growth via TOR Signaling in Budding Yeast
.....307
Yuehua Wei and X.P. Steven Zheng
Section III: Computational Systems biology: Computational Studies
and Analyses
19.
Computational Yeast Systems Biology: A Case Study for the MAP
Kinase Cascade
..................................323
Edda Klipp
20.
Standards, Tools, and Databases for the Analysis of Yeast Omics Data
......345
Axel Kowald and
Christoph Wierling
21.
A Computational Method to Search for
DNA
Structural Motifs in
Functional Genomic Elements
..........................367
Stephen C.J. Parker, Aaron Harlap, and Thomas D. Tullius
22.
High-Throughput Analyses and Curation of Protein Interactions in Yeast
.... 381
ShoshanaJ. Wodak,Jim
Vlasblom,
andSbuye
Pu
23.
Noise in Biological Systems: Pros, Cons, and Mechanisms of Control
......407
Yitzhak Pilpel
24.
Genome-Scale
Integrative Data
Analysis and Modeling of Dynamic
Processes in Yeast
.................................427
Jean-Marc Schwartz and Claire Gaugain
25.
Genome-Scale Metabolic Models of Saccharomyces cerevisiae
...........445
Intawat Nookaew, Roberto
Olivares-Hernández,
Sakarindr
Bhumiratana, and Jens Nielsen
Contents ix
26.
Representation,
Simulation,
and Hypothesis Generation in Graph
and Logical Models of Biological Networks
....................465
Ken Whelan, Oliver Ray, and Ross D. King
27.
Use of Genome-Scale Metabolic Models in Evolutionary Systems Biology
.... 483
Balázs
Papp,
Balázs Szappanos,
and Richard
A. Notebaart
Section IV: Yeast Systems Biology in Practice: Saccharomtces cerevisiae
as a Tool for Mammalian Studies
28.
Contributions of Succharomyces cerevisiae to Understanding Mammalian
Gene Function and Therapy
............................501
Nianshu Zhang and Elizabeth
Bilsland
Subject Index
.......................................525
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| dewey-tens | 570 - Biology |
| discipline | Biologie |
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| id | DE-604.BV039569269 |
| illustrated | Illustrated |
| indexdate | 2024-12-24T02:20:34Z |
| institution | BVB |
| isbn | 9781617791727 |
| language | English |
| oai_aleph_id | oai:aleph.bib-bvb.de:BVB01-024420818 |
| oclc_num | 756291279 |
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| physical | XIV, 535 S. Ill., graph. Darst. |
| publishDate | 2011 |
| publishDateSearch | 2011 |
| publishDateSort | 2011 |
| publisher | Humana Press |
| record_format | marc |
| series | Methods in molecular biology |
| series2 | Methods in molecular biology Springer protocols |
| spellingShingle | Yeast systems biology methods and protocols Methods in molecular biology Molekularbiologische Methode (DE-588)7650063-9 gnd Systembiologie (DE-588)4809615-5 gnd Molekulargenetik (DE-588)4039987-4 gnd Hefeartige Pilze (DE-588)4230509-3 gnd |
| subject_GND | (DE-588)7650063-9 (DE-588)4809615-5 (DE-588)4039987-4 (DE-588)4230509-3 (DE-588)4143413-4 |
| title | Yeast systems biology methods and protocols |
| title_auth | Yeast systems biology methods and protocols |
| title_exact_search | Yeast systems biology methods and protocols |
| title_full | Yeast systems biology methods and protocols ed. by J. I. Castrillo ... |
| title_fullStr | Yeast systems biology methods and protocols ed. by J. I. Castrillo ... |
| title_full_unstemmed | Yeast systems biology methods and protocols ed. by J. I. Castrillo ... |
| title_short | Yeast systems biology |
| title_sort | yeast systems biology methods and protocols |
| title_sub | methods and protocols |
| topic | Molekularbiologische Methode (DE-588)7650063-9 gnd Systembiologie (DE-588)4809615-5 gnd Molekulargenetik (DE-588)4039987-4 gnd Hefeartige Pilze (DE-588)4230509-3 gnd |
| topic_facet | Molekularbiologische Methode Systembiologie Molekulargenetik Hefeartige Pilze Aufsatzsammlung |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=024420818&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| volume_link | (DE-604)BV035362695 |
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