Bioinformatics for comparative proteomics
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| Format: | Buch |
|---|---|
| Sprache: | English |
| Veröffentlicht: |
Totowa, NJ
Humana Press
2011
|
| Schriftenreihe: | Methods in molecular biology
694 |
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
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MARC
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| 245 | 1 | 0 | |a Bioinformatics for comparative proteomics |c ed. by Cathy H. Wu ... |
| 264 | 1 | |a Totowa, NJ |b Humana Press |c 2011 | |
| 300 | |a XIII, 387 S. |b graph. Darst. | ||
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Datensatz im Suchindex
| DE-BY-TUM_call_number | 1002 BIO 110f 2011 B 1819 |
|---|---|
| DE-BY-TUM_katkey | 1778816 |
| DE-BY-TUM_location | 10 |
| DE-BY-TUM_media_number | 040044120265 |
| _version_ | 1820897985796505600 |
| adam_text | IX
CONTENTS
PREFACE
.............................................................
V
CONTRIBUTORS
.........................................................
XI
P
A R T
I: B
I O I N F O R M A T I C S
F
R A M E W O R K
F O R
C
O M P A R A T I V E
P
R O T E O M I C S
1 PROTEIN BIOINFORMATICS DATABASES AND
RESOURCES.......................... 3
CHUMING CHEN, HONGZHAN HUANG, AND CATHY H. WU
2 A GUIDE TO UNIPROT FOR PROTEIN SCIENTISTS
............................... 25
CLAIRE O*DONOVAN AND ROLF APWEILER
3 INTERPRO PROTEIN CLASSIFICATION
....................................... 37
JENNIFER MCDOWALL AND SARAH HUNTER
4 REACTOME KNOWLEDGEBASE OF HUMAN BIOLOGICAL
PATHWAYS AND PROCESSES............................................. 49
PETER D*EUSTACHIO
5 EFIP: A TOOL FOR MINING FUNCTIONAL IMPACT
OF PHOSPHORYLATION FROM LITERATURE....................................
63
CECILIA N. ARIGHI, AMY Y. SIU, CATALINA O. TUDOR,
JULES A. NCHOUTMBOUBE, CATHY H. WU, AND VIJAY K. SHANKER
6 A TUTORIAL ON PROTEIN ONTOLOGY RESOURCES FOR PROTEOMIC STUDIES
............. 77
CECILIA N. ARIGHI
7 STRUCTURE-GUIDED RULE-BASED ANNOTATION OF PROTEIN
FUNCTIONAL SITES IN UNIPROT KNOWLEDGEBASE .............................
91
SONA VASUDEVAN, C.R. VINAYAKA, DARREN A. NATALE,
HONGZHAN HUANG, ROBEL Y. KAHSAY, AND CATHY H. WU
P
A R T
II: P
R O T E O M I C
B
I O I N F O R M A T I C S
8 MODELING MASS SPECTROMETRY-BASED PROTEIN ANALYSIS
...................... 109
JAN ERIKSSON AND DAVID FENYOE
9 PROTEIN IDENTIFICATION FROM TANDEM MASS SPECTRA
BY DATABASE SEARCHING ............................................. 119
NATHAN J. EDWARDS
10 LC-MS DATA ANALYSIS FOR DIFFERENTIAL
PROTEIN EXPRESSION DETECTION
........................................ 139
RENCY S. VARGHESE AND HABTOM W. RESSOM
11 PROTEIN IDENTIFICATION BY SPECTRAL NETWORKS
ANALYSIS....................... 151
NUNO BANDEIRA
12 SOFTWARE PIPELINE AND DATA ANALYSIS FOR MS/MS PROTEOMICS:
THE TRANS-PROTEOMIC PIPELINE........................................ 169
ANDREW KELLER AND DAVID SHTEYNBERG
X CONTENTS
13 ANALYSIS OF HIGH-THROUGHPUT ELISA MICROARRAY DATA
..................... 191
AMANDA M. WHITE, DON S. DALY, AND RICHARD C. ZANGAR
14 PROTEOMICS DATABASES AND
REPOSITORIES.................................
213
LENNART MARTENS
15 PREPARING MOLECULAR INTERACTION DATA FOR PUBLICATION
...................... 229
SANDRA ORCHARD AND HENNING HERMJAKOB
16 SUBMITTING PROTEOMICS DATA TO PRIDE USING PRIDE CONVERTER
............. 237
HARALD BARSNES, JUAN ANTONIO VIZCAINO, FLORIAN REISINGER,
INGVAR EIDHAMMER, AND LENNART MARTENS
17 AUTOMATED DATA INTEGRATION AND DETERMINATION OF
POSTTRANSLATIONAL MODIFICATIONS WITH THE PROTEIN INFERENCE ENGINE
............ 255
STUART R. JEFFERYS AND MORGAN C. GIDDINGS
18 AN INTEGRATED TOP-DOWN AND BOTTOM-UP STRATEGY
FOR CHARACTERIZATION OF PROTEIN ISOFORMS AND
MODIFICATIONS.................. 293
SI WU, NIKOLA TOLIC
, ZHIXIN TIAN, ERROL W. ROBINSON,
AND LJILJANA PA*A-TOLIC
P
A R T
III: C
O M P A R A T I V E
P
R O T E O M I C S
I N
S
Y S T E M S
B
I O L O G Y
19 PHOSPHOPROTEOME RESOURCE FOR SYSTEMS BIOLOGY RESEARCH
.................. 307
BERND BODENMILLER AND RUEDI AEBERSOLD
20 PROTEIN-CENTRIC DATA INTEGRATION FOR FUNCTIONAL ANALYSIS OF
COMPARATIVE PROTEOMICS DATA........................................ 323
PETER B. MCGARVEY, JIAN ZHANG, DARREN A. NATALE,
CATHY H. WU, AND HONGZHAN HUANG
21 INTEGRATION OF PROTEOMIC AND METABOLOMIC PROFILING
AS WELL AS METABOLIC MODELING FOR THE FUNCTIONAL
ANALYSIS OF METABOLIC NETWORKS ......................................
341
PATRICK MAY, NILS CHRISTIAN, OLIVER EBENHOEH,
WOLFRAM WECKWERTH, AND DIRK WALTHER
22 TIME SERIES PROTEOME PROFILING ......................................
365
CATHERINE A. FORMOLO, MICHELLE MINTZ, ASAKO TAKANOHASHI,
KRISTY J. BROWN, ADELINE VANDERVER, BRIAN HALLIGAN,
AND YETRIB HATHOUT
INDEX
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . 379
|
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| bvnumber | BV039528837 |
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| format | Book |
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| genre_facet | Aufsatzsammlung |
| id | DE-604.BV039528837 |
| illustrated | Illustrated |
| indexdate | 2024-12-24T02:19:24Z |
| institution | BVB |
| isbn | 1607619768 9781607619765 |
| language | English |
| oai_aleph_id | oai:aleph.bib-bvb.de:BVB01-024381156 |
| oclc_num | 750837812 |
| open_access_boolean | |
| owner | DE-M49 DE-BY-TUM |
| owner_facet | DE-M49 DE-BY-TUM |
| physical | XIII, 387 S. graph. Darst. |
| publishDate | 2011 |
| publishDateSearch | 2011 |
| publishDateSort | 2011 |
| publisher | Humana Press |
| record_format | marc |
| series | Methods in molecular biology |
| series2 | Methods in molecular biology |
| spellingShingle | Bioinformatics for comparative proteomics Methods in molecular biology Bioinformatik (DE-588)4611085-9 gnd Proteomanalyse (DE-588)4596545-6 gnd |
| subject_GND | (DE-588)4611085-9 (DE-588)4596545-6 (DE-588)4143413-4 |
| title | Bioinformatics for comparative proteomics |
| title_auth | Bioinformatics for comparative proteomics |
| title_exact_search | Bioinformatics for comparative proteomics |
| title_full | Bioinformatics for comparative proteomics ed. by Cathy H. Wu ... |
| title_fullStr | Bioinformatics for comparative proteomics ed. by Cathy H. Wu ... |
| title_full_unstemmed | Bioinformatics for comparative proteomics ed. by Cathy H. Wu ... |
| title_short | Bioinformatics for comparative proteomics |
| title_sort | bioinformatics for comparative proteomics |
| topic | Bioinformatik (DE-588)4611085-9 gnd Proteomanalyse (DE-588)4596545-6 gnd |
| topic_facet | Bioinformatik Proteomanalyse Aufsatzsammlung |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=024381156&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| volume_link | (DE-604)BV035362695 |
| work_keys_str_mv | AT wucathyh bioinformaticsforcomparativeproteomics |