Tietz Textbook of clinical chemistry and molecular diagnostics

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Weitere Verfasser: Burtis, Carl A. (HerausgeberIn)
Format: Buch
Sprache:English
Veröffentlicht: St. Louis, Mo. Elsevier, Saunders 2006
Ausgabe:4. ed.
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245 1 0 |a Tietz Textbook of clinical chemistry and molecular diagnostics  |c [ed. by.] Carl A. Burtis ; Edward R. Ashwood ; David E. Bruns 
246 1 3 |a Clinical chemistry and molecular diagnostics 
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264 1 |a St. Louis, Mo.  |b Elsevier, Saunders  |c 2006 
300 |a XXXVI, 2412 S.  |b Ill., graph. Darst. 
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Datensatz im Suchindex

_version_ 1819610688216104960
adam_text Color insert follows page 1468. SECTION I LABORATORY PRINCIPLES 1 Introduction to Principles of Laboratory Analyses and Safety, 3 Edward W. Bermes, Jr., Ph.D., Stephen E. Kahn, Ph.D., and Donald S. Young, M.B., Ph.D. CONCEPT OF SOLUTE AND SOLVENT, 3 Definitions, 3 Expressing Concentrations of Solutions, 3 UNITS OF MEASUREMENT, 5 International System of Units, 5 Decimal Multiples and Submultiples of SI Units, 6 Applications of SI in Laboratory Medicine, 6 Problem Areas in the Use of SI Units, 8 Conversion Rules, 9 Standardized Reporting of Test Results, 9 CHEMICALS AND REFERENCE MATERIALS, 10 Reagent Grade Water, 10 Reagent Grade or Analytical Reagent Grade (AR) Chemicals, 12 Ultrapure Reagents, 12 Reference Materials, 12 BASIC TECHNIQUES AND PROCEDURES, 12 Volumetric Sampling and Dispensing, 12 Centrifugation, 19 Measurement of Radioactivity, 21 Gravimetry, 23 Thermometry, 25 Buffer Solutions, 25 Procedures for Processing Solutions, 26 SAFETY, 27 Safety Program, 28 Safety Equipment, 28 Safety Inspections, 28 Mandated Plans, 29 Ergonomics Program, 30 Hazards in the Laboratory, 30 Contents 2 Specimen Collection and Processing, 41 Donald S. Young, M.B., Ph.D., Edward W. Bermes, Jr., Ph.D., and Doris M. Haverstick, Ph.D. SPECIMEN COLLECTION, 41 Blood, 41 Urine, 49 Feces, 52 Spinal Fluid, 52 Synovial Fluid, 52 Amniotic Fluid (Amniocentesis), 53 Pleural, Pericardial, and Ascitic Fluids, 53 Saliva, 53 Swabs, 53 Solid Tissue, 53 Hair and Finger Nails, 54 HANDLING OF SPECIMENS FOR TESTING, 54 Maintenance of Specimen Identification, 54 Preservation of Specimens in Transit, 54 Separation and Storage of Specimens, 56 Transport of Specimens, 56 SECTION II ANALYTICAL TECHNIQUES AND INSTRUMENTATION 3 Optical Techniques, 61 L.J. Kricka, D.Phil., F.A.C.B., C.Chem., F.R.S.C, F.R.C.Path. NATURE OF LIGHT, 61 SPECTROPHOTOMETRY, 62 Basic Concepts, 62 Instrumentation, 64 REFLECTANCE PHOTOMETRY, 72 FLAME EMISSION SPECTROPHOTOMETRY, 73 ATOMIC ABSORPTION SPECTROPHOTOMETRY, 73 Basic Concepts, 73 Instrumentation, 73 Interferences in Atomic Absorption Spectrophotometry, 74 FLUOROMETRY, 75 Basic Concepts, 75 Instrumentation, 77 Limitations of Fluorescence Measurements, 83 PHOSPHORESCENCE, 84 CHEMILUMINESCENCE, BIOLUMINESCENCE, AND ELECTROCHEMILUMINESCENCE, 84 Basic Concepts, 84 Instrumentation, 85 Limitations of Chemiluminescence and Electrochemiluminescence Measurements, 85 NEPHELOMETRY AND TURBIDIMETRY, 85 Basic Concepts, 85 Measurement of Scattered Light, 87 Instrumentation, 88 Limitations of Light-Scattering Measurements, 88 4 Electrochemistry and Chemical Sensors, 93 Paul D Orazio, Ph.D., and Mark E. Meyerhoff, Ph.D. POTENTIOMETRY AND ION-SELECTIVE ELECTRODES, 93 Basic Concepts, 93 Types of Electrodes, 94 Direct Potentiometry by ISE—Units of Measure and Reporting for Clinical Applications, 100 VOLTAMMETRY/AMPEROMETRY, 101 Basic Concepts, 101 Applications, 103 CONDUCTOMETRY, 105 COULOMETRY, 106 OPTICAL CHEMICAL SENSORS, 106 Basic Concepts, 107 Applications, 107 BIOSENSORS, 108 Enzyme-Based Biosensors With Amperometric Detection, 108 Enzyme-Based Biosensors With Potentiometric and Conductometric Detection, 110 Enzyme-Based Biosensors With Optical Detection, 111 Affinity Sensors, 112 IN VIVO AND MINIMALLY INVASIVE SENSORS, 113 5 Electrophoresis, 121 Raymond Karcher, Ph.D., and James P. Landers, Ph.D. BASIC CONCEPTS AND DEFINITIONS, 121 THEORY OF ELECTROPHORESIS, 121 CONVENTIONAL ELECTROPHORESIS, 122 Instrumentation, 122 General Operations, 125 Technical and Practical Considerations, 126 Types of Electrophoresis, 128 CAPILLARY ELECTROPHORESIS, 130 Instrumentation, 131 Technical Considerations, 133 Modes of Operation, 134 MICROCHIP ELECTROPHORESIS, 135 Instrumentation, 135 Fabrication of Microchips, 136 Molecular Diagnostics Using Microchips, 137 6 Chromatography, 141 M. David Ullman, Ph.D., and Carl A. Burtis, Ph.D. BASIC CONCEPTS, 141 SEPARATION MECHANISMS, 142 Ion-Exchange Chromatography, 142 Partition Chromatography, 143 Adsorption Chromatography, 144 Affinity Chromatography, 144 Size-Exclusion Chromatography, 144 RESOLUTION, 145 Retention Factor (k ), 146 Efficiency (N), 147 PLANAR CHROMATOGRAPHY, 148 COLUMN CHROMATOGRAPHY, 149 Gas Chromatography, 149 Liquid Chromatography, 155 QUALITATIVE AND QUANTITATIVE ANALYSES, 161 Analyte Identification, 161 Analyte Quantification, 161 7 Mass Spectrometry, 165 Thomas Annesley, Ph.D., Alan L. Rockwood, Ph.D., and Nicholas E. Sherman, Ph.D. BASIC CONCEPTS AND DEFINITIONS, 165 INSTRUMENTATION, 167 Ion Source, 167 Vacuum System, 171 Mass Analyzers, Ion Detectors, and Tandem Mass Spectrometers, 171 Detectors, 180 Computer and Software, 181 CLINICAL APPLICATIONS, 181 Gas Chromatography-Mass Spectrometry, 182 Liquid Chromatography-Mass Spectrometry, 182 MALDI-TOF Mass Spectrometry, 183 SELDI Mass Spectrometry, 184 ICP Mass Spectrometry, 184 Proteomics, 184 ANALYTICAL PROBLEM OF ION SUPPRESSION, 185 8 Principles of Clinical Enzymology, 191 Renze Bais, Ph.D., and Mauro Panteghini, M.D. BASIC PRINCIPLES, 191 Enzyme Nomenclature, 191 Enzymes as Proteins, 192 Enzymes as Catalysts, 198 ENZYME KINETICS, 198 The Enzyme-Substrate Complex, 198 Factors Governing the Rate of Enzyme-Catalyzed Reactions, 199 ANALYTICAL ENZYMOLOGY, 207 Measurement of Reaction Rates, 207 Units for Expressing Enzyme Activity, 209 Measurement of Substrates, 209 Optimization, Standardization, and Quality Control, 210 Measurement of Enzyme Mass Concentration, 211 Enzymes as Analytical Reagents, 211 Analytical Applications of Immobilized Enzymes, 213 Measurement of Isoenzymes and Isoforms, 213 DIAGNOSTIC ENZYMOLOGY, 214 Factors Affecting Enzyme Levels in Plasma or Serum, 214 Selection of Enzyme Tests, 216 9 Principles of Immunochemical Techniques, 219 L.J. Kricka, D.Phil., F.A.C.B., C.Chem., F.R.S.C, ER.C.Path. BASIC CONCEPTS, 219 Antibodies, 219 Immunogens, 220 ANTIGEN ANTIBODY BINDING, 221 Binding Forces, 221 Reaction Mechanism, 222 Factors Influencing Binding, 222 Types of Reactions, 223 QUALITATIVE METHODS, 224 Passive Gel Diffusion, 224 Immunoelectrophoresis (IEP), 225 Western Blotting, 227 Dot Blotting, 228 QUANTITATIVE METHODS, 229 Radial Immunodiffusion and Electroimmunoassay, 229 Turbidimetric and Nephelometric Assays, 230 Labeled Immunochemical Assays, 230 Interferences in Immunoassays, 239 OTHER IMMUNOCHEMICAL TECHNIQUES, 239 Immunocytochemistry, 239 Agglutination Assays, 240 10 Nanotechnology and Microfabrication, 245 Peter Wilding, Ph.D., ER.C.Path., ER.S.C, H.C.L.D.(A.B.B.) BACKGROUND, 246 FABRICATION AND MATERIALS, 247 Manufacturing Techniques, 247 Drilling, 249 Bonding and Sealing, 249 MICROFLUIDICS, 250 VALVING SYTEMS, 250 APPLICATIONS, 252 Genomics, 252 Hybridization Arrays, 253 Nucleic Acid Sequencing, 254 Drug Detection and Assay, 254 Protein Chips, 254 Immunoassay for Antibodies and Peptides, 255 Enzymology, 255 Metabolites, 255 Cell Handling and Cell Culture, 256 Other Applications, 256 SURFACE CHEMISTRY ISSUES, 256 LIMITATIONS OF MICROTECHNOLOGY, 257 THE FUTURE, 257 11 Automation in the Clinical Laboratory, 265 lames C. Boyd, M.D., and Charles D. Hawker, Ph.D., M.B.A., F.A.C.B. HISTORICAL OVERVIEW, 265 Processes Used in Automation, 266 Laboratory Information Systems, 266 Robotics, 267 Types of Automation, 267 INDIVIDUAL STEPS IN THE ANALYTICAL PROCESSES, 267 Specimen Acquisition, 268 Specimen Identification, 268 Specimen Delivery to Laboratory, 270 Specimen Preparation, 271 Specimen Loading and Aspiration, 271 On-Analyzer Specimen Delivery, 272 Reagent Handling and Storage, 273 Reagent Delivery, 274 Chemical Reaction Phase, 274 Measurement Approaches, 276 INTEGRATED AUTOMATION FOR THE CLINICAL LABORATORY, 280 Workstations, 281 Instrument Clusters, 281 Workcells, 282 Automated Specimen Transport, 282 Automated Specimen Processing, 284 Automated Specimen Sorting, 288 Automated Specimen Storage and Retrieval, 289 PRACTICAL CONSIDERATIONS, 289 Evaluation of Requirements, 289 Problems of Integration, 290 Measuring the Impact of Automation, 292 DEVELOPMENT OF STANDARDS FOR LABORATORY AUTOMATION, 292 OTHER AREAS OF AUTOMATION, 292 Urine Analyzers, 292 Flow Cytometers, 293 Hematology Cell Counters, 293 Nucleic Acid Analyzers, 293 Microtiter Plate Systems, 294 Automated Pipetting Stations, 294 POCT Analyzers, 294 Remote Automated Laboratory System, 294 12 Point-of-Care Testing, 299 Christopher P. Price, Ph.D., and Andrew St. John, Ph.D., M.A.A.C.B. ANALYTICAL AND TECHNOLOGICAL CONSIDERATIONS, 299 Requirements, 299 Design, 301 Examples of POCT Devices, 303 Informatics and POCT, 308 IMPLEMENTATION AND MANAGEMENT CONSIDERATIONS, 310 Establishment of Need, 310 Organizing and Implementation of a Coordination Committee, 311 POCT Policy and Accountability, 311 Equipment Procurement and Evaluation, 31 I Training and Certification, 312 Quality Control, Quality Assurance, and Audit, 312 Maintenance and Inventory Control, 313 Documentation, 314 Accreditation and Regulation of POCT, 315 FUTURE OF POCT, 315 SECTION III PRINCIPLES OF LABORATORY MEDICINE 13 Introduction to Laboratory Medicine and Evidence-Based Laboratory Medicine, 323 Christopher P. Price, Ph.D., Patrick MM. Bossuyt, Ph.D., and David E. Bruns, M.D. CONCEPTS, DEFINITIONS, AND RELATIONSHIPS, 323 What Is Laboratory Medicine?, 323 Clinical Chemistry and Laboratory Medicine, 324 Clinical Chemistry, Laboratory Medicine, and Evidence-Based Laboratory Medicine, 324 EVIDENCE-BASED MEDICINE—WHAT IS IT?, 324 Definition and Goals of Evidence-Based Medicine, 324 The Practice of Evidence-Based Medicine, 325 EVIDENCE-BASED MEDICINE AND LABORATORY MEDICINE, 325 What is Evidence-Based Laboratory Medicine?, 325 Types of Diagnostic Questions Addressed in Laboratory Medicine, 326 Test Results Alone Do Not Produce Clinical Outcomes, 326 Using the Test Result, 328 The Clinical Setting of an Outcome Study, 328 CHARACTERIZATION OF DIAGNOSTIC ACCURACY OF TESTS, 328 Study Design, 328 The Reporting of Studies of Diagnostic Accuracy and the Role of the STARD Initiative, 329 OUTCOMES STUDIES, 330 What Are Outcomes Studies?, 330 Why Outcomes Studies?, 332 Design of Studies of Medical Outcomes, 333 SYSTEMATIC REVIEWS OF DIAGNOSTIC TESTS, 336 Why Systematic Reviews?, 336 Conducting a Systematic Review, 336 ECONOMIC EVALUATIONS OF DIAGNOSTIC TESTING, 338 A Hierarchy of Evidence, 338 Methodologies for Economic Evaluations, 338 Quality of Economic Evaluations, 340 Perspectives of Economic Evaluations, 340 Choice of Outcome Measures, 340 Use of Economic Evaluations in Decision Making, 341 CLINICAL PRACTICE GUIDELINES, 341 What Is a Clinical Practice Guideline?, 341 A Transparent Process Must Be Used in the Development of Guidelines, 341 Steps in the Development of Guidelines, 342 Obtaining External Review and Updating the Guidelines, 345 CLINICAL AUDIT, 345 Audit to Help Solve Problems, 346 Monitoring Workload and Demand, 346 Monitoring the Introduction of a New Test, 346 Monitoring Adherence to Best Practice, 347 APPLYING THE PRINCIPLES OF EVIDENCE-BASED LABORATORY MEDICINE IN ROUTINE PRACTICE, 347 14 Selection and Analytical Evaluation of Methods— With Statistical Techniques, 353 Kristian Linnet, M.D., and James C. Boyd, M.D. METHOD SELECTION, 353 Medical Criteria, 353 Analytical Performance Criteria, 354 Other Criteria, 354 BASIC CONCEPTS IN RELATION TO ANALYTICAL METHODS, 355 Calibration, 355 Trueness and Accuracy, 356 Precision, 357 Precision Profile, 358 Linearity, 359 Analytical Measurement Range, 359 Limit of Detection, 359 Analytical Sensitivity, 361 Limit of Quantitation, 361 Analytical Specificity and Interference, 361 ANALYTICAL GOALS, 362 Qualitative Methods, 363 METHOD COMPARISON, 368 Basic Error Model, 368 Method Comparison Data Model, 370 Preliminary Practical Work in Relation to a Method Comparison Study, 371 Planning a Method Comparison Study, 371 Distribution of Differences Plot (DoD plot), 371 Verification of Distribution of Differences in Relation to Specified Limits, 376 Difference (Bland-Altman) Plot, 376 A Caution Against Incorrect Interpretation of Paired f-Tests in Method Comparison Studies, 377 Regression Analysis, 378 Discussion of Application of Regression Analysis, 395 Discussion of Method Comparison Approaches, 395 MONITORING SERIAL RESULTS, 396 TRACEABILITY AND MEASUREMENT UNCERTAINTY, 397 Traceability, 397 The Uncertainty Concept, 398 GUIDELINES, REGULATORY DEMANDS, AND ACCREDITATION, 402 SOFTWARE PACKAGES, 403 15 Clinical Evaluation of Methods, 409 Edward K. Shultz, M.D., M.S., Constantin Aliferis, M.D., Ph.D., and Dominik Aronsky, M.D., Ph.D. SPECTRUM, 409 CLASSIFICATION BIAS, 410 SENSITIVITY AND SPECIFICITY, 411 RECEIVER OPERATING CHARACTERISTIC CURVES, 412 INTERPRETING A TEST, 413 Odds Ratio, 413 Likelihood Ratio, 413 Bayes Theorem, 414 Combination Testing, 415 Multivariate Data Analysis, 416 Data Analysis Methods for Very Large Numbers of Variables, 418 Clinical Examples, 419 Model Validation, 420 COST EFFECTIVENESS AND OUTCOMES RESEARCH, 420 16 Establishment and Use of Reference Values, 425 Helge Erik Solberg, M.D., Ph.D. THE CONCEPT OF REFERENCE VALUES, 425 Interpretation by Comparison, 425 Normal Values—An Obsolete Term, 425 Terminology, 426 Types of Reference Values, 426 Requirements, 427 SELECTION OF REFERENCE INDIVIDUALS, 427 Concept of Health in Relation to Reference Values, 427 Strategies for Selection of Reference Individuals, 427 Selection Criteria and Evaluation of Subjects, 430 Partitioning of the Reference Group, 430 SPECIMEN COLLECTION, 430 Two Philosophies of Standardization, 431 Standardization Schemes, 431 The Necessity for Additional Information, 431 ANALYTICAL PROCEDURES AND QUALITY CONTROL, 432 STATISTICAL TREATMENT OF REFERENCE VALUES, 433 Statistical Concepts, 433 Determination of Reference Limits: General Considerations, 434 Partitioning of Reference Values, 436 Inspection of Distribution, 436 Identification and Handling of Erroneous Values, 437 Methods for Determining Reference Values, 437 PRESENTATION OF AN OBSERVED VALUE IN RELATION TO REFERENCE VALUES, 442 ADDITIONAL TOPICS, 443 Transferability of Reference Values, 443 Multivariate, Population-Based Reference Regions, 443 Subject-Based Reference Values, 445 Dynamic Versus Static Interpretation of Clinical Chemistry Data, 446 17 Preanalytical Variables and Biological Variation, 449 Donald S. Young, M.B., Ph.D., and Edward W. Bermes, Jr., Ph.D. PREANALYTICAL VARIABLES, 449 Controllable Variables, 449 Noncontrollable Variables, 459 BIOLOGICAL VARIABILITY, 467 Overview, 467 Delta Check, 468 Calculating Total Variation, 469 Reference Change Values, 469 Index of Individuality, 469 Index of Heterogeneity, 470 Reliability Coefficient, 470 Quality Specifications for Total Error Allowable, 470 Assessment of Mode of Reporting Test Results, 471 18 Clinical Laboratory Informatics, 475 Kent A. Spackman, M.D., Ph.D. COMPUTING FUNDAMENTALS, 475 Computer Basics, 475 Hardware, 476 Rate of Change of Computing Capacity, 477 Computer Networks, 478 LABORATORY INFORMATION SYSTEMS, 478 LIS Modules, 478 Life Cycle of Information Systems, 481 Regulatory Issues, 482 Security and Confidentiality, 482 PATHOLOGY INFORMATICS RESOURCES, 482 19 Quality Management, 485 fames O. Westgard, Ph.D., and George G. Klee, MM, Ph.D. FUNDAMENTALS OF TOTAL QUALITY MANAGEMENT, 485 Fundamental Concepts, 485 Fundamental Principles, 486 TOTAL QUALITY MANAGEMENT OF THE CLINICAL LABORATORY, 487 LABORATORY ERROR AND THE SIX SIGMA PROCESS, 488 Number of Errors Made in the Clinical Laboratory, 488 Six Sigma Principles and Metrics, 488 ELEMENTS OF A QUALITY ASSURANCE PROGRAM, 490 Commitment, 491 Facilities and Resources, 491 Technical Competence, 491 Technical Procedures, 491 Problem-Solving Mechanism, 491 CONTROL OF PREANALYTICAL VARIABLES, 491 Systems Analysis, 491 Types of Preanalytical Variables, 492 CONTROL OF ANALYTICAL VARIABLES, 494 Choice of Analytical Methodology, 495 Reference Materials and Calibration, 495 Documentation of Analytical Protocols, 496 Establishment of Reference Intervals, 496 Monitoring Technical Competence, 496 Inventory Control of Materials, 496 Input Control of Materials, 497 Monitoring Method Changes, 497 CONTROL OF ANALYTICAL QUALITY USING STABLE CONTROL MATERIALS AND CONTROL CHARTS, 497 Control Materials, 497 General Principles of Control Charts, 498 Performance Characteristics of a Control Procedure, 498 CONTROL OF ANALYTICAL QUALITY USING PATIENT DATA. 510 Individual Patient Results, 510 Multiple Patients, 512 EXTERNAL QUALITY ASSESSMENT AND PROFICIENCY TESTING PROGRAMS, 515 External Quality Assessment, 515 Proficiency Testing and Laboratory Accreditation, 516 IDENTIFYING THE SOURCES OF ANALYTICAL ERRORS, 519 Physical Inspection, 519 Relationship of Type and Source of Error, 519 Method Evaluation Experiments, 520 Optimization Techniques, 520 QUALITY INITIATIVES, 520 Joint Committee for Traceability in Laboratory Medicine (JCTLM), 520 International Organization for Standardization, 521 Malcolm Baldridge National Quality Award, 523 SECTION IV ANALYTES 20 Amino Acids, Peptides, and Proteins, 533 A. Myron Johnson, M.D. AMINO ACIDS, 533 Basic Biochemistry, 533 Clinical Implications, 539 Analysis of Amino Acids, 540 PEPTIDES AND PROTEINS, 541 Basic Biochemistry, 541 Plasma Proteins, 543 Complement Proteins, 564 Immunoglobulins, 569 Proteins in Other Body Fluids, 575 Miscellaneous Proteins, 580 Analysis of Proteins, 582 21 Enzymes, 597 Mauro Panteghini, M.D., Renze Bais, Ph.D., and Wouter W. van Solinge, Ph.D. MUSCLE ENZYMES, 597 Creatine Kinase, 598 Lactate Dehydrogenase, 601 Aldolase, 603 Glycogen Phosphorylase, 603 LIVER ENZYMES, 604 Aminotransferases, 604 Glutamate Dehydrogenase, 607 Alkaline Phosphatase, 607 5 -Nucleotidase, 611 Gamma-Glutamyl Transferase 612 Glutathione S-Transferase, 613 Cholinesterase, 614 PANCREATIC ENZYMES, 616 Amylase, 616 Lipase, 619 Trypsin, 622 Chymotrypsin, 623 Elastase-1,623 BONE ENZYMES, 623 Alkaline Phosphatase (Bone Isoform), 624 Acid Phosphatase (Tartrate-Resistant), 624 RED CELL ENZYMES, 625 The Embden-Meyerhof Pathway, 626 Hexose Monophosphate Pathway, 630 Rapoport-Luebering Cycle, 631 Glutathione Pathway, 631 Purine-Pyrimidine Metabolism, 632 Methemoglobin Reduction, 633 Detection of Hereditary Red Cell Enzyme Deficiencies, 633 Methodology, 634 22 Cytokines, 645 Manuel Santos Rosa, Ph.D., andAnabela Mota Pinto, Ph.D. BACKGROUND INFORMATION, 645 History, 645 Rationale for Measurement, 645 General Characteristics, 646 Nomenclature, 646 Classification, 646 Biochemistry, 647 Cytokine Receptors, 649 Clinical Significance, 649 INDIVIDUAL CYTOKINES, 655 Interleukin-1, 655 Interleukin-2,660 Interleukin-3, 664 Interleukin-4, 666 Interleukin-5, 669 Interleukin-6, 671 Interleukin-7, 675 Interleukin-8, 676 Interleukin-9, 676 Interleukin-10, 678 Interleukin-11,680 Interleukin-12, 682 Interleukin-13, 686 Interleukin-14, 688 Interleukin-15, 689 Interleukin-16, 691 Interleukin-17, 693 Interleukin-18, 694 Interferons, 695 Tumor Necrosis Factors, 702 Chemokines, 708 MEASUREMENTS OF CYTOKINES, 720 Requirements, 720 Sample Collection and Storage, 721 Principles of Cytokine Assays, 721 23 Tumor Markers, 745 Daniel W. Chan, Ph.D., D.A.B.C.C, F.A.C.B. Ronald A. Booth, Ph.D., and Eleftherios P. Diamandis, M.D., Ph.D. CANCER, 745 HISTORICAL BACKGROUND, 746 CLINICAL APPLICATIONS, 747 EVALUATING CLINICAL UTILITY, 749 Reference Values, 749 Predictive Value Model, 749 Distribution of Marker Values, 750 Disease Management, 750 CLINICAL GUIDELINES, 752 ANALYTICAL METHODOLOGY, 752 Mass Spectrometry, 752 Microarrays, 754 ENZYMES, 754 Alkaline Phosphatase, 755 Creatine Kinase, 756 Lactate Dehydrogenase, 756 Neuron-Specific Enolase, 756 Prostatic Acid Phosphatase, 756 Kallikreins, 756 Prostate-Specific Antigen, 757 Human Glandular Kallikrein 2, 761 The Urokinase-Plasminogen Activator System, 761 Cathepsins, 762 Matrix Metalloproteinases, 763 Tumor-Associated Trypsin Inhibitor, 763 Telomerase, 764 HORMONES, 765 Adrenocorticotropic Hormone, 765 Calcitonin, 765 Human Chorionic Gonadotropin, 766 ONCOFETAL ANTIGENS, 766 Alpha Fetoprotein, 767 Carcinoembryonic Antigen, 768 CYTOKERATINS, 769 Tissue Polypeptide Antigen, 769 Tissue Polypeptide-Specific Antigen, 769 Cytokeratin 19 Fragments, 769 Squamous Cell Carcinoma Antigen, 769 CARBOHYDRATE MARKERS, 770 CA 15-3, 770 CA 549, 771 CA 27.29, 771 Mucinlike Carcinoma-Associated Antigen, 771 CA 125, 771 Other Ovarian Cancer Biomarkers, 772 DU-PAN-2, 772 BLOOD GROUP ANTIGENS, 773 CA 19-9, 773 CA 50, 773 CA 72-4, 773 CA 242, 774 PROTEINS, 774 Immunoglobulin, 774 Bladder Cancer Markers, 775 Heat Shock Proteins, 776 S-100 Proteins, 776 Autoantibodies, 776 Thyroglobulin and Antibodies, 777 Chromogranins, 777 RECEPTORS AND OTHER MARKERS, 777 Estrogen and Progesterone Receptors, 777 Androgen Receptor, 779 Hepatocyte Growth Factor Receptor (c-Met), 779 Epidermal Growth Factor Receptor, 779 GENETIC MARKERS, 780 Oncogenes, 780 Tumor Suppressor Genes, 783 Single Nucleotide Polymorphisms, 785 MISCELLANEOUS MARKERS, 786 Markers of Angiogenesis, 786 Cell-Free Nucleic Acids, 786 Circulating Cancer Cells, 786 24 Kidney Function Tests, 797 Edmund Lamb, Ph.D., David J. Newman, Ph.D., and Christopher P. Price, Ph.D. CREATININE, 797 Biochemistry and Physiology, 797 Clinical Significance, 798 Analytical Methodology, 798 UREA, 801 Biochemistry and Physiology, 801 Clinical Significance, 802 Analytical Methodology, 802 URIC ACID, 803 Biochemistry and Physiology, 803 Clinical Significance, 805 Analytical Methodology, 807 SCREEENING FOR KIDNEY DISEASE, 808 Urinalysis, 808 Microscopic Examination of Urine, 811 New Instrumental Techniques, 812 QUANTITATIVE ASSESSMENT OF GLOMERULAR PERMEABILITY: PROTEINURIA, 812 Clinical Significance, 812 Sample Collection for Total Protein and Albumin Measurement, 812 Measurement of Total Protein, 813 Measurement of Individual Proteins, 813 Characterization of Proteinuria, 817 ASSESSMENT OF KIDNEY FUNCTION: ESTIMATION OF GLOMERULAR FILTRATION RATE, 818 The Concept of Clearance, 818 Markers Used, 818 Glomerular Filtration Rate at the Extremes of Age, 824 Recommendations and Reference Intervals, 825 25 Carbohydrates, 837 David B. Sacks, M.B., Ch.B., ER.C.Path. CHEMISTRY OF CARBOHYDRATES, 837 Monosaccharides, 837 Disaccharides, 839 Polysaccharides, 839 Glycoproteins, 840 METABOLISM OF CARBOHYDRATES, 841 Digestion and Absorption, 841 Intermediary Metabolism, 841 Regulation of Blood Glucose Concentration, 841 DIABETES MELLITUS, 853 Classification, 854 Pathogenesis of Type 1 Diabetes Mellitus, 855 Pathogenesis of Type 2 Diabetes Mellitus, 856 Diagnosis, 859 Gestational Diabetes Mellitus, 861 Chronic Complications of Diabetes Mellitus, 862 Role of the Clinical Laboratory in Diabetes Mellitus, 863 HYPOGLYCEMIA, 864 Hypoglycemia in Neonates and Infants, 865 Fasting Hypoglycemia in Adults, 865 Postprandial Hypoglycemia, 866 Hypoglycemia in Diabetes Mellitus, 867 Tolbutamide Tolerance Test, 867 DETERMINATION OF GLUCOSE IN BODY FLUIDS, 868 Specimen Collection and Storage, 868 Methods, 869 Reference Intervals, 871 Measurement of Glucose in Urine, 872 Self-Monitoring of Blood Glucose, 873 Minimally Invasive Monitoring of Blood Glucose, 875 KETONE BODIES, 875 Clinical Significance, 876 Determination of Ketone Bodies in Body Fluids, 876 LACTATE AND PYRUVATE, 877 Clinical Significance, 877 Methods for Measuring Lactate and Pyruvate in Body Fluids, 878 GLYCATED PROTEINS, 878 Glycated Hemoglobin, 879 Fructosamine, 884 Advanced Glycation End Products, 886 URINARY ALBUMIN EXCRETION, 886 Clinical Significance, 886 Methods for Measuring Urinary Albumin Excretion, 887 INBORN ERRORS OF CARBOHYDRATE METABOLISM, 888 Disorders of Galactose Metabolism, 888 Disorders of Fructose Metabolism, 889 Disorders of Pentose Metabolism, 889 Other Urinary Sugars, 889 Methods for Measuring Individual Sugars, 889 GLYCOGEN STORAGE DISEASE, 890 Type I (Glucose-6-Phosphatase Deficiency), 890 Type II (Acid a-Glucosidase Deficiency), 891 Type HI (Amylo-1,6-Glucosidase Deficiency), 891 Type IV (Branching Enzyme Deficiency), 891 Type V (Muscle Phosphorylase Deficiency), 891 Type VI (Liver Phosphorylase or Phosphorylase Kinase Deficiency), 891 Type VII (Muscle Phosphofructokinase Deficiency), 891 26 Lipids, Lipoproteins, Apolipoproteins, and Other Cardiovascular Risk Factors, 903 Nader Rifai, Ph.D., and G. Russell Warnick, M.S., M.B.A. BASIC BIOCHEMISTRY, 903 Basic Lipids, 903 Lipoproteins, 915 Apolipoproteins, 916 Lipoprotein Metabolism, 918 Reference Lipid, Lipoprotein Cholesterol, and Apolipoprotein Levels, 922 CLINICAL SIGNIFICANCE, 924 Association With Coronary Heart Disease, 924 Disorders of Lipoprotein Metabolism, 928 Diagnosis of Lipoprotein Disorders, 932 Management of Lipoprotein Disorders, 934 MEASUREMENT OF LIPIDS, LIPOPROTEINS, AND APOLIPOPROTEINS, 938 Historical Perspective and Background, 938 Lipids and Lipoproteins, 940 Sources of Variation in Lipid and Lipoprotein Measurements, 954 Apolipoproteins, 958 Lipoprotein(a), 960 Apolipoprotein E, 961 OTHER CARDIAC RISK FACTORS, 962 High-Sensitivity C-Reactive Protein, 962 Homocysteine, 967 27 Electrolytes and Blood Gases, 983 Mitchell G. Scott, Ph.D., Vicky A. LeGrys, D.A., M.T.(A.S.C.R), CLS.(N.CA), and James Stacey Klutts, M.D., Ph.D. ELECTROLYTES, 983 Specimens for Electrolyte Determinations, 983 Sodium, 984 Potassium, 984 Electrolyte Exclusion Effect, 987 Chloride, 989 Bicarbonate (Total Carbon Dioxide), 990 PLASMA AND URINE OSMOLALITY, 992 Principles of Osmotic Pressure and Osmosis, 992 SWEAT TESTING, 994 Qualitative Screening Tests, 995 Quantitative Confirmatory Tests, 995 Reference Intervals for Sweat Chloride, 996 Sweat Stimulation and Collection, 996 Sources of Error in Sweat Testing, 998 Sweat Testing Quality Assurance, 998 BLOOD GASES AND pH, 998 Behavior of Gases, 999 Application of the Henderson-Hasselbalch Equation in Blood Gas Measurements, 1001 Oxygen in Blood, 1002 Tonometry, 1006 Determination of PCO2) PO2, and pH, 1006 Temperature Correction of Measured pH, PCO2 and PO2, 1013 Continuous and Noninvasive Monitoring of Blood Gases, 1014 28 Hormones, 1019 Michael Kleerekoper, M.D., F.A.C.E., F.A.C.B. CLASSIFICATION, 1019 Polypeptide or Protein Hormones, 1019 Steroid Hormones, 1019 Amino Acid-Related Hormones, 1019 RELEASE AND ACTION OF HORMONES, 1019 Growth and Development, 1025 Homeostatic Control of Metabolic Pathways, 1025 Regulation of the Production, Use, and Storage of Energy, 1026 ROLE OF HORMONE RECEPTORS, 1026 Cell-Surface Receptors, 1026 Intracellular Receptors, 1027 POSTRECEPTOR ACTIONS OF HORMONES, 1027 Cell-Surface Receptors, 1027 Intracellular Receptors, 1029 CLINICAL DISORDERS OF HORMONES, 1030 MEASUREMENTS OF HORMONES AND RELATED ANALYTES, 1030 Bioassay Techniques, 1030 Receptor-Based Assays, 1030 Immunoassay Techniques, 1030 Instrumental Techniques, 1031 29 Catecholamines and Serotonin, 1033 Thomas G. Rosano, Ph.D., Graeme Eisenhofer, Ph.D., and Ronald J. Whitley, Ph.D. CHEMICAL STRUCTURE, 1033 BIOSYNTHESIS, RELEASE, AND METABOLISM, 1033 Biosynthesis, 1034 Storage and Release, 1035 Uptake and Metabolism, 1036 PHYSIOLOGY OF CATECHOLAMINE AND SEROTONIN SYSTEMS, 1039 Central Nervous System, 1040 Sympathetic Nervous System, 1041 Adrenal Medullary System, 1043 Peripheral Dopaminergic System, 1044 Enteric Nervous System, 1045 CLINICAL APPLICATIONS, 1045 Pheochromocytoma, 1045 Neuroblastoma, 1049 Dysautonomias and Genetic Disorders, 1050 Carcinoid, 1052 ANALYTICAL METHODOLOGY, 1054 Catecholamines and Metabolites, 1054 Serotonin and Metabolites, 1062 30 Vitamins and Trace Elements, 1075 Alan Shenkin, Ph.D., Malcolm Raines, F.R.S.C., F.R.C.Path., Gordon S. Fell, Ph.D., F.R.C.Path., and T.D.G. Lyon, B.Sc, Ph.D. NUTRITIONAL ASSESSMENT AND MONITORING, 1076 Protein-Energy Status, 1076 Vitamin and Trace Element Status, 1077 Enzymes or Metabolites, 1077 Markers of Antioxidant Status, 1077 Analytical Factors, 1078 VITAMINS, 1079 Vitamin A, 1079 Vitamin D, 1084 Vitamin E, 1084 Vitamin K, 1087 Vitamin B,—Thiamine, 1090 Vitamin B2—Riboflavin, 1094 Vitamin B6—Pyridoxine, Pyridoxamine, and Pyridoxal, 1097 Vitamin B12—Cyanocobalamin, 1100 Vitamin C—Ascorbic Acid, 1105 Biotin, 1107 Folk Acid, 1109 Niacin and Niacinamide, 1114 Pantothenic Acid, 1116 TRACE ELEMENTS, 1118 Classification, 1118 Dose-Effect Relationships, 1118 Chemistry, 1119 Biochemistry/Homeostasis, 1119 Inborn Errors, 1119 Interactions, 1119 Laboratory Assessment of Trace Element Status, 1120 Analytical Considerations, 1120 Individual Trace Elements, 1122 Other Possibly Essential Elements, 1141 31 Hemoglobin, Iron, and Bilirubin, 1165 Trefor Higgins, M.Sc, Ernest Beutler, M.D., and Basil T. Doumas, Ph.D. HEMOGLOBIN, 1165 Biochemistry, 1165 Physiological Role, 1169 Analytical Methodology, 1170 Clinical Significance, 1178 IRON, 1186 Biochemistry, 1186 Analytical Methodology, 1188 Clinical Significance, 1192 BILIRUBIN, 1193 Chemistry, 1193 Biochemistry, 1194 Analytical Methodology, 1195 Clinical Significance, 1198 32 Porphyrins and Disorders of Porphyrin Metabolism, 1209 Allan C. Deacon, B.Sc, Ph.D., Dip.C.B., F.R.C.Path., Sharon D. Whatley, Ph.D., and George H. Elder, M.D. PORPHYRIN CHEMISTRY, 1209 Structure and Nomenclature, 1209 Chelation of Metals, 1209 Spectral Properties, 1209 Solubility, 1210 HEME BIOSYNTHESIS, 1211 Enzymes of Heme Biosynthesis, 1211 EXCRETION OF HEME PRECURSORS, 1213 REGULATION OF HEME BIOSYNTHESIS, 1213 ABNORMALITIES OF PORPHYRIN METABOLISM, 1214 The Porphyrias, 1214 Abnormalities of Porphyrin Metabolism Not Caused by Porphyria, 1220 Pseudoporphyria, 1221 LABORATORY DIAGNOSIS OF PORPHYRIA, 1221 Patients With Symptoms of Porphyria, 1221 Relatives of Patients With Porphyria, 1223 ANALYTICAL METHODS, 1223 Methods for Metabolites, 1223 Methods for Blood Porphyrins, 1226 Analysis of Plasma Porphyrins, 1226 Enzyme Measurements, 1226 DNA Analysis, 1229 33 Therapeutic Drugs and Their Management, 1237 Thomas P. Moyer, Ph.D., and Leslie M. Shaw, Ph.D. DEFINITIONS, 1238 BASIC CONCEPTS, 1238 Mechanism of Action, 1238 Pharmacokinetics, 1240 Drug Disposition, 1243 Clinical Utility, 1247 ANALYTICAL CONSIDERATIONS, 1248 Analytical Techniques, 1248 Issues of Concern, 1249 SPECIFIC DRUG GROUPS, 1249 Antiepileptic Drugs, 1249 Cardioactive Drugs, 1256 Bronchodilators, 1261 Antibiotics, 1262 Antiretrovirals, 1269 Antipsychotic Drugs, 1269 Antimetabolites, 1272 Immunosuppressants, 1274 CLINICAL APPLICATIONS, 1280 34 Clinical Toxicology, 1287 William H. Porter, Ph.D. BASIC INFORMATION, 1287 Clinical Considerations, 1288 Analytical Considerations, 1289 Toxic Syndromes, 1289 Abstinence Syndromes, 1292 SCREENING PROCEDURES FOR DETECTION OF DRUGS, 1292 Spot Tests, 1292 Determination of Volatiles by Serum Osmol Gap, 1292 Immunoassay, 1293 Planar Chromatography, 1293 Gas Chromatography, 1294 High-Performance Liquid Chromatography, 1296 PHARMACOLOGY AND ANALYSIS OF SPECIFIC DRUGS AND TOXIC AGENTS, 1296 Agents That Cause Cellular Hypoxia, 1296 Alcohols, 1300 Analgesics (Nonprescription), 1304 Drugs Related to the Anticholinergic Toxidrome, 1308 Ethylene Glycol, 1313 Toxic Metals/Iron, 1314 Organophosphate and Carbamate Insecticides, 1315 Drugs of Abuse, 1317 ON-SITE DRUG TESTING, 1350 Sequential Competitive Binding Microparticle Capture Immunoassay, 1350 Homogenous Microparticle Capture Immunochromatography, 1351 Solid Phase Competitive Sequential Enzyme Immunoassay, 1351 Latex-Agglutination-Inhibition Immunoassay, 1351 35 Toxic Metals, 1371 Thomas P. Moyer, Ph.D., Mary F. Burritt, Ph.D., and John Butz, B.A. BASIC CONCEPTS, 1371 Prevalence of Metal-Based Toxicity, 1371 Diagnosing Toxicity, 1372 Classification of Metals, 1372 Occupational Monitoring, 1373 Analytical Methods, 1373 SPECIFIC METALS, 1374 Aluminum, 1374 Antimony, 1375 Beryllium, 1377 Cadmium, 1377 Chromium, 1378 Cobalt, 1378 Copper, 1378 Iron, 1379 Lead,1379 Manganese, 1381 Mercury, 1381 Nickel, 1383 Platinum, 1383 Selenium, 1383 Silicon, 1384 Silver, 1384 Thallium, 1384 SECTION V MOLECULAR DIAGNOSTICS AND GENETICS 36 Principles of Molecular Biology and Approaches to Nucleic Acid Isolation, 1393 Y.M. Dennis Lo, M.A., DM., D.Phil, F.R.C.P., F.R.C.Path., and Rossa W.K. Chiu, M.B.B.S., Ph.D., F.R.C.P.A. LANDMARK DEVELOPMENTS IN GENETICS AND MOLECULAR DIAGNOSTICS, 1393 NUCLEIC ACID CHEMISTRY, BIOCHEMISTRY, AND BIOLOGY, 1394 Molecular Compositions and Structures of DNA and RNA, 1394 Chromosome Structure, 1395 Replication, Transcription, and Translation, 1396 Genetics and Epigenetics, 1397 Nuclear and Mitochondrial Genomes, 1398 Circulating Nucleic Acids, 1399 NUCLEIC ACID ISOLATION, 1400 DNA Isolation, 1400 RNA Isolation, 1401 Assessment of Nucleic Acid Yield and Quality, 1401 THE HUMAN GENOME PROJECT, 1401 37 Nucleic Acid Techniques, 1407 Carl T. Wittwer, M.D., Ph.D., and Noriko Kusukawa, Ph.D. GENOMES AND NUCLEIC ACID ALTERATIONS, 1407 Human Genome, 1407 Bacterial Genomes and Sequence Alterations, 1410 Viral Genomes and Sequence Alterations, 1410 NUCLEIC ACID ENZYMES, 1410 AMPLIFICATION TECHNIQUES, 1411 Polymerase Chain Reaction (PCR)—Target Amplification, 1412 Other Forms of Target Amplification, 1416 Other Approaches to Amplification, 1418 Endpoint Quantification in Amplification Assays, 1419 DETECTION TECHNIQUES, 1419 Generic Measurement and Visualization of Nucleic Acids, 1419 Reporter Molecules and Labeled Probes, 1419 DISCRIMINATION TECHNIQUES, 1421 Electrophoresis, 1421 Alternatives to Electrophoresis, 1427 Hybridization Assays—Principles, 1429 Hybridization Assays—Examples, 1432 Real-Time PCR, 1436 Melting Analysis, 1441 Comparison of Closed-Tube SNP Genotyping Methods, 1444 CONCLUSION, 1445 38 Design and Operation of the Molecular Diagnostics Laboratory, 1451 Anthony A. Killeen, M.D., Ph.D. INTRODUCTION, 1451 Centralization or Decentralization?, 1451 Choosing a Test Menu, 1451 SPACE AND DESIGN CONSIDERATIONS, 1452 OPERATIONAL CONSIDERATIONS, 1452 Documents, Records, Sample Retention, 1452 Personnel, 1453 Result Reporting, 1453 Quality Assurance and Quality Improvement, 1454 Proficiency Testing, 1455 SUMMARY, 1455 39 Molecular Genetics and Diagnosis of Hematopoietic Neoplasms, 1457 Kojo S.I. Elenitoba-Johnson, M.D. ANTIGEN-RECEPTOR GENE REARRANGEMENTS FOR DETERMINATION OF CLONALITY, 1458 Molecular Genetic Basis for Immunoglobulin-Gene Rearrangements, 1458 Molecular Genetic Basis for T-Cell Receptor Gene Rearrangements, 1460 Southern Blot Hybridization Analysis for Antigen-Receptor (Ig or TCR) Gene Rearrangements, 1461 Polymerase Chain Reaction Analysis of Antigen- Receptor Gene Rearrangements, 1462 LYMPHOMA-SPECIFIC RECURRENT CHROMOSOMAL TRANSLOCATIONS, 1463 Southern Blot Hybridization Analysis for the Detection of Chromosomal Translations, 1464 Polymerase Chain Reaction Analysis for Detection of Chromosomal Translations, 1464 MOLECULAR GENETICS OF LEUKEMIAS, 1466 Acute Myeloid Leukemias, 1466 Chronic Leukemias of Myeloid/Monocytic Lineage, 1469 Use of Reverse-Transcription Polymerase Chain Reaction in Chromosomal Translocations, 1471 ONCOGENE AND TUMOR SUPPRESSOR GENE MUTATIONS IN HEMATOPOIETIC MALIGNANCIES, 1472 MINIMAL RESIDUAL DISEASE DETECTION AND MONITORING, 1474 DETECTION OF VIRAL GENOMES, 1475 Epstein-Barr Virus, 1475 IN SITU HYBRIDIZATION, 1476 POTENTIAL OF MICROARRAYS IN MOLECULAR DIAGNOSTICS OF HEMATOLOGICAL MALIGNANCIES, 1476 CONCLUSIONS, 1476 40 Inherited Diseases, 1483 Cindy /.. Vnenatk-Jones, Ph.D. DISEASES WITH MF.NDELIAN INHERITANCE, 1483 Autosomal Recessive Diseases, 1483 Autosomal Dominant Diseases, 1491 X-Linked Diseases, 1496 DISEASES WITH NONMENDELIAN INHERITANCE, 1502 Mitochondrial DNA Diseases, 1502 Imprinting, 1504 Complex Diseases, 1506 REPORTING OF TEST RESULTS, 1513 41 Identity Assessment, 1539 Thomas M. Williams, MAX, Victor IV. Weedn, Mil, 1.11, and Malek Kamoun, M.D., Ph.D. VARIATION IN THE HUMAN GENOME, 1539 Genetic Variation Useful in Identity Testing, 1539 Exclusion of Tested Individuals, 1540 Likelihood of Inclusion of Tested Individuals, 1541 Samples Employed for Identity Testing, 1541 FORENSIC DNA TYPING, 1541 Forensic Applications, 1541 Genetic Systems Used in Forensic Identification, 1542 Instrumentation Used in Forensic Laboratories, 1544 Quality Assurance and Accreditation in Forensic DNA Analysis, 1544 Statistical Interpretation, 1545 Convicted Offender Databases, 1545 Legal Issues, 1545 USE OF DNA TESTING FOR THE IDENTIFICATION OF CLINICAL SPECIMENS, 1545 TRANSPLANTATION TESTING, 1546 Genetic Features of Hl.A Genes, 1546 Historical Applications of HLA Typing, 1547 Transplantation, 1547 DNA-Based HLA Allele Identification, 1548 Interpretation of HLA Test Results, 1548 Quality Assurance and Quality Control Issues, 1549 Proficiency Testing, 1549 Accreditation and Certification of Laboratories and Professionals, 1549 CHIMERISM AND HEMATOPOIETIC CELL ENGRAFTMENT ANALYSIS, 1549 Methods for Performing Engraftment Analysis, 1549 Selection and Interpretation of Short Tandem Repeat Loci, 1550 Applications of Microsatellite Locus Testing to Engraftment Analysis, 1550 Proficiency Testing, 1551 Quality Assurance and Quality ( .ontrol, I 551 Accreditation, 1551 PARENTAGE TESTING, 1551 Methods, Instrumentation, and Sample Requirements, 1551 Reporting ot Test Results, 1551 Quality Assurance and Quality ( ontrol, 1352 Policy and Procedures lor Resolution of Complaints, 1533 Accreditation, 1353 42 Molecular Methods in Diagnosis and Monitoring of Infectious Diseases, 1555 Andrea Ferreim-Gonzalez, Ph.D., and Angela M. Caliendo, M.D., Ph.D. DEVELOPMENT OF MOLECULAR ASSAYS FOR INFECTIOUS DISEASES, 1555 Analyte-Specific Reagents, 1556 When to Use a Molecular Test for an Infectious Disease, 1556 Choice of Specimen to Test and Analytical Approach, 1556 Test Development, 1557 Preanalytical Variables, 1557 Internal Controls, 1557 Nucleic Acid Extraction, 1557 Quantitative Molecular LDTs, 1558 TEST VERIFICATION, 1558 Analytical Verification, 1558 Clinical Verification, 1560 QUALITY CONTROL AND QUALITY ASSURANCE, 1561 INTERPRETATION OF RESULTS, 1562 REPORTING OF RESULTS, 1563 SPECIFIC PATHOGENS, 1563 Chlamydia Trachomatis and Neisseria Gonorrhoeae, 1563 Human Papillomavirus, 1565 Human Immunodeficiency Virus Type 1,1567 Herpes Simplex Virus, 1570 Enterovirus, 1571 Perinatal Group B Streptococcal Disease, 1572 Cytomegalovirus, 1573 Mycobacterium tuberculosis, 1575 Hepatitis C Virus, 1576 43 Pharmacogenetics, 1589 Gwendolyn A. McMillin, Ph.D., D.A.B.C.C, Mark W. Under, Ph.D., and Bonny Lewis Bukaveckas, Ph.D. DEFINING PHARMACOGENETIC TARGETS AND WHAT TESTING TO CONSIDER, 1589 APPROACHES TO PHARMACOGENETIC TESTING, 1590 CLINICAL APPLICATION OF PHARMACOGENETIC TESTING, 1592 BEST EXAMPLES OF CLINICALLY RELEVANT PHARMACOGENETIC TARGETS, 1592 Thiopurine S-Methyltransferase, 1592 Cytochrome P450 2D6 (CYP2D6), 1595 Cytochrome P450 2C19 (CYP2C19), 1600 Cytochrome P450 2C9 (CYP2C9), 1602 N-Acetyl Transferases (NAT1 and NAT2), 1603 Other Pharmacogenetic Targets and Future Directions, 1609 SECTION VI PATHOPHYSIOLOGY 44 Cardiac Function, 1619 Fred S. Apple, Ph.D., and Allan S. Jaffe, M.D. BASIC ANATOMY, 1619 PHYSIOLOGY, 1621 Cardiac Cycle, 1621 Cardiac Conducting System, 1621 CARDIAC DISEASE, 1622 Congestive Heart Failure, 1622 Acute Coronary Syndromes, 1623 CARDIAC BIOMARKERS, 1629 Cardiac Troponin I and T, 1629 Brain Natriuretic Peptide, 1629 Creatine Kinase Isoenzymes and Isoforms, 1631 Myoglobin, 1632 Lactate Dehydrogenase Isoenzymes, 1632 C-Reactive Protein, 1633 Serum Amyloid, 1633 sCD40 Ligand, 1633 Cytokines, 1633 Myeloperoxidase, 1634 Phospholipase A2, 1634 Pregnancy Associated Plasma Protein A, 1634 Oxidized LDL, 1634 Matrix Metalloproteinases, 1634 Monocyte Chemotactic Protein, 1634 Tumor Necrosis Factor Alpha, 1634 Tissue Plasminogen Activator Antigen, 1634 Secreted Platelet Granular Substances, 1634 Isoprostanes, 1635 Urinary Thromboxane, 1635 Adhesion Molecules, 1635 Other Proposed Markers, 1635 ANALYTICAL MEASUREMENT OF CARDIAC PROTEINS, 1635 Cardiac Troponin, 1635 Brain Natriuretic Peptide, 1640 Creatine Kinase-2 and Isoforms, 1642 Myoglobin, 1643 Lactate Dehydrogenase Isoenzymes, 1643 CLINICAL UTILITY, 1643 GENERAL BIOMARKER OBSERVATIONS, 1645 Cardiac Troponin, 1645 Brain Natriuretic Peptide, 1645 CK-2, 1652 Myoglobin, 1653 Lactate Dehydrogenase, 1653 GENERAL CLINICAL PRACTICE, 1653 Strategies for the Role of Cardiac Troponin for Risk Assessment, 1654 Clinical Utility of Cardiac Markers in Monitoring Reperfusion Following Thrombolytic Therapy, 1659 Use of Multimarkers, 1660 Estimation of Infarct Size, 1660 45 Kidney Disease, 1671 Michael P. Delaney, B.Sc, M.D., M.R.C.P. Christopher P. Price, Ph.D., David J. Newman, Ph.D., and Edmund Lamb, Ph.D. ANATOMY, 1671 Blood Supply, 1671 Nephron, 1672 Juxtaglomerular Apparatus, 1676 Renal Interstitium, 1677 KIDNEY FUNCTION AND PHYSIOLOGY, 1677 Excretory and Reabsorptive Functions, 1677 Regulatory Function, 1679 Endocrine Function, 1683 Glomerular Filtration Rate, 1683 Glomerular Permeability and Filtration, 1686 Proteinuria, 1687 PATHOPHYSIOLOGY OF KIDNEY DISEASE, 1688 Diagnosis and Screening for Kidney Disease, 1689 Classification of Kidney Failure, 1689 DISEASES OF THE KIDNEY, 1691 The Uremic Syndrome, 1691 Chronic Kidney Disease, 1693 End-Stage Renal Disease, 1697 Diabetic Nephropathy, 1699 Hypertensive Nephropathy, 1702 Glomerular Diseases, 1702 Interstitial Nephritis, 1706 Polycystic Kidney Disease, 1706 Toxic Nephropathy, 1707 Obstructive Uropathy, 1707 Tubular Diseases, 1707 Diabetes Insipidus, 1711 Renal Calculi, 1711 Cystinuria, 1715 Prostaglandins and NSAIDs in Kidney Disease, 1716 Monoclonal Light Chains and Kidney Disease, 1716 Assessment of Renal Concentrating Ability: Urinary Osmolality, 1718 RENAL REPLACEMENT THERAPY, 1718 Background, 1719 Dialysis, 1719 Kidney Transplantation, 1725 46 Physiology and Disorders of Water, Electrolyte, and Acid-Base Metabolism, 1747 James Stacey Klutts, M.D., Ph.D., and Mitchell G. Scott, Ph.D. TOTAL BODY WATER—VOLUME AND DISTRIBUTION, 1747 WATER AND ELECTROLYTES—COMPOSITION OF BODY FLUIDS, 1748 Extracellular and Intracellular Compartments, 1749 Reasons for Composition Differences of Body Fluids, 1750 Distribution of Ions by Active and Passive Transport, 1750 ELECTROLYTES, 1750 Sodium, 1750 Potassium, 1754 Chloride, 1757 Bicarbonate, 1757 ACID-BASE PHYSIOLOGY, 1757 Acid-Base Balance and Acid-Base Status, 1757 Buffer Systems and Their Role in Regulating the pH of Body Fluids, 1759 Respiratory Mechanism in the Regulation of Acid-Base Balance, 1762 Renal Mechanisms in the Regulation of Acid-Base Balance, 1763 CONDITIONS ASSOCIATED WITH ABNORMAL ACID-BASE STATUS AND ABNORMAL ELECTROLYTE COMPOSITION OF THE BLOOD, 1767 Metabolic Acidosis (Primary Bicarbonate Deficit), 1768 Metabolic Alkalosis (Primary Bicarbonate Excess), 1772 Respiratory Acidosis, 1774 Respiratory Alkalosis, 1775 47 Liver Disease, 1777 D. Robert Dufour, M.D. ANATOMY OF THE LIVER, 1777 Gross Anatomy, 1777 Microscopic Anatomy, 1779 Ultrastructure of the Hepatocyte, 1780 BIOCHEMICAL FUNCTIONS OF THE LIVER, 1780 Hepatic Excretory Function, 1781 Hepatic Synthetic Function, 1787 Hepatic Metabolic Function, 1789 Hepatic Storage Function, 1792 CLINICAL MANIFESTATIONS OF LIVER DISEASE, 1792 Jaundice, 1792 Portal Hypertension, 1792 Hepatorenal Syndrome, 1796 Altered Drug Metabolism, 1796 Nutritional and Metabolic Abnormalities, 1796 Disordered Hemostasis in Liver Disease, 1796 Enzymes Released from Diseased Liver Tissue, 1797 DISEASES OF THE LIVER, 1798 Mechanisms and Patterns of Injury, 1798 Disorders of Bilirubin Metabolism, 1798 Hepatic Viral Infection, 1798 Acute Hepatitis, 1804 Chronic Hepatitis, 1809 Alcoholic Liver Disease, 1817 Cirrhosis, 1819 Hepatic Glycogenoses, 1820 Cholestatic Liver Diseases, 1820 Hepatic Tumors, 1823 DIAGNOSTIC STRATEGY, 1825 Plasma Enzymes, 1826 Plasma Albumin, 1826 Prothrombin Time, 1827 Plasma Bilirubin, 1827 48 Gastric, Pancreatic, and Intestinal Function, 1849 Peter G. Hill, Ph.D., C.Chem., F.R.S.C, F.R.C.Path. INTRODUCTION TO ANATOMY AND PHYSIOLOGY OF THE GASTROINTESTINAL TRACT, 1849 Anatomy, 1849 Phases of Digestion, 1850 PROCESSES OF DIGESTION AND ABSORPTION, 1851 Digestion and Absorption of Carbohydrates, 1852 Digestion and Absorption of Lipids, 1854 Digestion and Absorption of Proteins, 1854 STOMACH: DISEASES AND LABORATORY INVESTIGATIONS, 1856 Peptic Ulcer Disease and Helicobacter pylori, 1856 Diagnostic Tests for H. pylori, 1856 Determination of Basal Acid Output, 1858 INTESTINAL DISORDERS AND THEIR LABORATORY INVESTIGATION, 1859 Celiac Disease (Celiac Sprue, Gluten-Sensitive Enteropathy), 1859 Disaccharidase Deficiencies, 1862 Bacterial Overgrowth, 1864 Bile Salt Malabsorption, 1865 Protein-Losing Enteropathy, 1866 THE PANCREAS: DISEASES AND ASSESSMENT OF EXOCRINE PANCREATIC FUNCTION, 1867 Pediatric Disorders of the Exocrine Pancreas, 1867 Adult Disorders of the Exocrine Pancreas, 1867 Tests of Exocrine Function of the Pancreas, 1868 GASTROINTESTINAL REGULATORY PEPTIDES, 1873 Cholecystokinin, 1873 Gastrin, 1874 Secretin, 1875 Vasoactive Intestinal Polypeptide, 1876 Glucose-Dependent Insulinotropic Peptide (GIP, Gastric Inhibitory Polypeptide), 1876 Other Regulatory Peptides, 1876 NEUROENDOCRINE TUMORS, 1877 Gastrinoma and the Zollinger-Ellison Syndrome, 1877 The Watery Diarrhea Hypokalemia Achlorhydria Syndrome (Werner-Morrison Syndrome, WDHA Syndrome, VIPoma), 1877 Other Gastrointestinal Neuroendocrine Tumors and Tumor Markers, 1877 INVESTIGATION OF MALDIGESTION/ MALABSORPTION, 1878 Evaluation of Fat Absorption, 1878 INVESTIGATION OF CHRONIC DIARRHEA, 1881 Laxative Abuse, 1881 Fecal Osmotic (Osmolal) Gap, 1883 49 Mineral and Bone Metabolism, 1891 David B. Endres, Ph.D., and Robert K. Rude, M.D. OVERVIEW OF BONE AND MINERAL, 1891 CALCIUM, 1892 Biochemistry and Physiology, 1892 Clinical Significance, 1893 Measurement of Calcium, 1896 Patient Preparation and Sources of Preanalytical Error for Total and Free Calcium Measurements, 1902 Reference Intervals for Total and Free Calcium in Serum and Plasma, 1903 Physiological Variation in Calcium, 1903 Interpretation of Total and Free Calcium Results, 1903 Urinary Calcium, 1904 PHOSPHATE, 1905 Biochemistry and Physiology, 1905 Clinical Significance, 1905 Measurement of Phosphate, 1907 Reference Intervals, 1908 MAGNESIUM, 1909 Biochemistry and Physiology, 1909 Clinical Significance, 1909 Measurement of Total Magnesium, 1911 Measurement of Free (Ionized) Magnesium, 1912 Reference Intervals for Total and Free Magnesium, 1912 HORMONES REGULATING MINERAL METABOLISM, 1912 Parathyroid Hormone, 1912 Vitamin D and Its Metabolites, 1920 Calcitonin, 1926 Parathyroid Hormone-Related Protein, 1928 INTEGRATED CONTROL OF MINERAL METABOLISM, 1930 Renal Handling of Calcium and Phosphate, 1930 Intestinal Absorption of Calcium and Phosphate, 1931 Bone Metabolism, 1931 Magnesium, 1931 METABOLIC BONE DISEASES, 1932 Osteoporosis, 1932 Osteomalacia and Rickets, 1933 Paget s Disease, 1934 Renal Osteodystrophy, 1934 BIOCHEMICAL MARKERS OF BONE TURNOVER, 1935 Preanalytical and Analytical Variables, 1936 Markers of Bone Resorption, 1936 Markers of Bone Formation, 1940 50 Pituitary Function, 1967 Laurence M. Demers, Ph.D., F.A.C.B., D.A.B.C.C, and Mary Lee Vance, M.D. ANATOMY, 1967 ADENOHYPOPHYSIS, 1968 Regulation of Function, 1968 Growth Hormone and Insulin-like Growth Factors, 1969 Prolactin, 1976 Corticotropin (Adrenocorticotropin) and Related Peptides, 1981 Gonadotropins (Follicle-Stimulating Hormone, Luteinizing Hormone), 1984 Thyrotropin, 1988 Assessment of Anterior Pituitary Lobe Reserve, 1988 NEUROHYPOPHYSIS, 1991 Arginine Vasopressin, 1991 Oxytocin, 1996 51 The Adrenal Cortex, 2003 Laurence M. Demers, Ph.D., F.A.C.B., D.A.B.C.C. GENERAL STEROID CHEMISTRY, 2003 Chemical Structure, 2003 Biochemistry, 2005 ADRENOCORTICAL STEROIDS, 2007 General Biochemistry, 2007 Metabolism, 2012 The Hypothalamic-Pituitary-Adrenal Cortical Axis, 2014 Regulation of Adrenal Hormones, 2014 Testing the Functional Status of the Adrenal Cortex, 2016 DISORDERS OF THE ADRENAL CORTEX, 2021 Hypofunction of the Adrenal Cortex, 2021 Hyperfunction of the Adrenal Cortex, 2024 ANALYTICAL METHODOLOGY, 2033 Choice of Specimen, 2033 Free Versus Bound Steroids, 2034 Hydrolysis, Extraction, and Separation, 2034 Specific Methods, 2036 52 The Thyroid: Pathophysiology and Thyroid Function Testing, 2053 Laurence M. Demers, Ph.D., F.A.C.B., D.A.B.C.C, and Carole Spencer, Ph.D. THYROID HORMONES, 2053 Chemistry, 2053 Biological Function, 2054 Biochemistry, 2055 Metabolism, 2056 Physiology, 2056 THYROID DYSFUNCTION, 2057 Hypothyroidism, 2057 Hyperthyroidism, 2059 Nonthyroidal Illness, 2061 Hypothyroidism Versus Euthyroid Sick Syndrome, 2062 Hyperthyroid Versus Euthyroid Sick Syndrome, 2063 Effect of Drugs, 2063 Diagnosis of Thyroid Dysfunction, 2063 ANALYTICAL METHODS, 2065 Determination of Thyroid-Stimulating Hormone in Blood, 2066 Determination of Thyroxine in Serum, 2068 Determination of Triiodothyronine in Serum, 2071 Determination of Reverse Triiodothyronine (rT3) Using Radioimmunoassay, 2073 Determination of Free Thyroid Hormones, 2073 Determination of Thyroxine-Binding Globulin and Other Thyroid Hormone-Binding Proteins, 2082 Determination of Thyroglobulin, 2083 Determination of Antithyroid Antibodies, 2084 53 Reproductive Related Disorders, 2097 Shannon Haymond, Ph.D., and Ann M. Gronowski, Ph.D. MALE REPRODUCTIVE BIOLOGY, 2097 Anatomy, 2097 Hypothalamic-Pituitary-Gonadal Axis, 2097 Androgens, 2098 Male Reproductive Development, 2099 Male Reproductive Abnormalities, 2102 FEMALE REPRODUCTIVE BIOLOGY, 2104 Anatomy, 2104 Hypothalamic-Pituitary-Gonadal Axis, 2105 Estrogens, 2105 Progesterone, 2108 Female Reproductive Development, 2109 Female Reproductive Abnormalities, 2110 Normal Menstrual Cycle, 2112 Ovulation, 2114 Irregular Menses, 2114 INFERTILITY, 2120 Male Infertility, 2120 Female Infertility, 2124 Assisted Reproduction, 2127 ANALYTICAL METHODOLOGY, 2127 Measurement of Total Testosterone in Blood, 2127 Measurement of Free and Weakly Bound Testosterone in Blood, 2129 Measurement of Testosterone in Saliva, 2131 Measurement of Testosterone Precursors and Metabolites in Blood, 2131 Measurement of Dehydroepiandrosterone and Its Sulfate, 2132 Measurement of 17-Ketosteroids in Urine, 2134 Measurement of Anabolic Steroids, 2134 Measurement of Estrogens in Blood, 2134 Measurement of Estriol, 2136 Measurement of Estrogens in Urine, 2136 Measurement of Estrogens in Saliva, 2137 Measurement of Progesterone in Blood, 2137 Measurement of Progesterone in Saliva, 2138 54 Clinical Chemistry of Pregnancy, 2153 Edward R. Ashwood, M.D., and George ]. Knight, Ph.D. HUMAN PREGNANCY, 2153 Conception, Embryo, and Fetus, 2153 Placenta, 2154 Amniotic Fluid, 2155 Maternal Adaptation, 2156 Functional Development of the Fetus, 2159 MATERNAL AND FETAL HEALTH ASSESSMENT, 2160 Clinical Specimens, 2160 Diagnosis and Dating of Pregnancy, 2160 COMPLICATIONS OF PREGNANCY, 2161 Abnormal Pregnancies, 2161 Trophoblastic Disease, 2165 Fetal Anomalies, 2165 Preterm Delivery, 2166 MATERNAL SERUM SCREENING FOR FETAL DEFECTS, 2167 Clinical Application of Prenatal Screening, 2168 LABORATORY TESTS, 2179 Chorionic Gonadotropin, 2179 Alpha Fetoprotein, 2182 Unconjugated Estriol, 2183 Dimeric Inhibin A, 2186 Fetal Fibronectin, 2186 Amniotic Fluid Bilirubin (M4M), 2187 Tests for Evaluating Fetal Lung Maturity, 2188 55 Inborn Errors of Amino Acid, Organic Acid, and Fatty Acid Metabolism, 2207 Piero Rinaldo, M.D., Ph.D., Sihoun Hahn, M.D., Ph.D., and Dietrich Matern, M.D. BIOCHEMICAL DIAGNOSIS, 2207 Prenatal Diagnosis, 2208 Newborn Screening, 2209 Evaluation of Symptomatic Patients, 2209 Postmortem Screening, 2210 DISORDERS OF AMINO ACID METABOLISM, 2211 Classic Phenylketonuria and Other Hyperphenylalaninemias, 2211 Tyrosinemia Type 1, 2217 Homocystinuria, 2219 Maple Syrup Urine Disease, 2220 Urea Cycle Defects, 2220 Nonketotic Hyperglycinemia, 2221 DISORDERS OF ORGANIC ACID METABOLISM, 2221 Disorders of Propionate Metabolism, 2222 Isovaleric Acidemia, 2222 Glutaric Acidemia Type I, 2230 Ethylmalonic Encephalopathy, 2230 DISORDERS OF FATTY ACID OXIDATION, 2230 Very Long-Chain Acyl-CoA Dehydrogenase Deficiency, 2232 Trifunctional Protein and Long-Chain 3-Hydroxy Acyl-CoA Dehydrogenase Deficiencies, 2232 Medium-Chain Acyl-CoA Dehydrogenase Deficiency, 2236 Short-Chain Acyl-CoA Dehydrogenase Deficiency, 2236 ANALYTICAL CONSIDERATIONS, 2237 Analysis of Amino Acids, 2237 Analysis of Organic Acids, 2237 Analysis of Acylcarnitines, 2241 SECTION VII APPENDIX 56 Reference Information for the Clinical Laboratory, 2251 William L. Roberts, M.D., Ph.D., Gwendolyn A. McMillin, Ph.D., D.A.B.C.C., Carl A. Burtis, Ph.D., and David E. Bruns, M.D. Table 56-1 Reference Intervals and Values, 2252 Table 56-2 Therapeutic and Toxic Levels of Drugs, 2303 Table 56-3 Critical Values, 2317
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spellingShingle Tietz Textbook of clinical chemistry and molecular diagnostics
Klinische Chemie (DE-588)4135255-5 gnd
Molekulare Diagnostik (DE-588)4589005-5 gnd
subject_GND (DE-588)4135255-5
(DE-588)4589005-5
title Tietz Textbook of clinical chemistry and molecular diagnostics
title_alt Clinical chemistry and molecular diagnostics
title_auth Tietz Textbook of clinical chemistry and molecular diagnostics
title_exact_search Tietz Textbook of clinical chemistry and molecular diagnostics
title_full Tietz Textbook of clinical chemistry and molecular diagnostics [ed. by.] Carl A. Burtis ; Edward R. Ashwood ; David E. Bruns
title_fullStr Tietz Textbook of clinical chemistry and molecular diagnostics [ed. by.] Carl A. Burtis ; Edward R. Ashwood ; David E. Bruns
title_full_unstemmed Tietz Textbook of clinical chemistry and molecular diagnostics [ed. by.] Carl A. Burtis ; Edward R. Ashwood ; David E. Bruns
title_short Tietz Textbook of clinical chemistry and molecular diagnostics
title_sort tietz textbook of clinical chemistry and molecular diagnostics
topic Klinische Chemie (DE-588)4135255-5 gnd
Molekulare Diagnostik (DE-588)4589005-5 gnd
topic_facet Klinische Chemie
Molekulare Diagnostik
url http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=022098656&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA
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