Intestinal microorganisms of termites and other invertebrates

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Veröffentlicht: Berlin [u.a.] Springer 2006
Schriftenreihe:Soil biology 6
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_version_ 1804139029905539072
adam_text into the intestinal microbiota of ected towards graduate students il interest in the soil or intestinal in general. iding their expertises and contri- sible. We also express our thanks mventional and less investigated, blication in this prestigious book, eschlik and Dr. Jutta Lindenborn o managed this special book. Helmut König and Ajit Varma Part I Soil Invertebrates 1 Biology of Soil Invertebrates 3 Gerhard Eisenbeis 1.1 Introduction.............................................. 3 1.2 The Microfauna............................................ 8 1.2.1 Protozoa........................................... 8 1.2.2 Nematoda - Roundworms, Eelworms................... 10 1.3 TheMesofauna............................................. 12 1.3.1 Pseudoscorpionida - False Scorpions, Book Scorpions 13 1.3.2 Acari - Mites..................................... 14 1.3.3 Symphyla.......................................... 17 1.3.4 Pauropoda......................................... 19 1.3.5 Collembola - Springtails.......................... 19 1.3.6 Protura........................................... 23 1.3.7 Diplura - Double Tails............................ 25 1.4 The Macrofauna........................................... 26 1.4.1 Araneida - Spiders................................ 27 1.4.2 Opiliones - Harvestmen............................ 29 1.4.3 Terrestrial Isopoda (Oniscoidea) - Woodlice....... 30 1.4.4 Chilopoda ֊ Centipedes............................ 33 1.4.5 Diplopoda - Millipedes............................ 35 1.4.6 Enchytraeidae - Whiteworms, Potworms.............. 37 1.4.7 Oligochaeta: Lumbricidae - Earthworms............. 39 1.4.8 Terrestrial Gastropoda - Slugs and Snails......... 41 1.4.9 Insecta - Pterygote Insects (Short Comments About the Role of Selected Groups of Higher Insects).... 42 1.5 Conclusions.............................................. 43 References.................................................... 47 2 Interactions Between Bacteria and Nematodes 55 Leo Eberl, David ). Clarke 2.1 Introduction............................................. 55 X Contents 2.2 Pathogenic Interactions.................................. 55 2.3 Symbiotic Interactions................................... 57 2.3.1 Photorhabdus and Xenorhabdus....................... 57 2.4 Conclusions.............................................. 62 References..................................................... 62 3 Earthworm Gut Microbial Biomes: Their Importance to Soil Microorganisms, Denitrification, and the Terrestrial Pro duction of the Greenhouse Gas N2 O 65 Harold L. Drake, Andreas Schramm, Marcus A. Horn 3.1 Introduction............................................. 65 3.2 The Earthworm Gut as a Transient Microbial Habitat....... 65 3.3 In Vivo and In Situ Emissions of the Greenhouse Gas N20 by Earthworms............................................ 66 3.4 Microenvironment of the Earthworm Gut.................... 69 3.4.1 The Digestive System of the Earthworm.............. 69 3.4.2 Physicochemical Parameters of the Gut that Stimulate Ingested Microbes.................................. 70 3.5 Microbial Processes in the Earthworm Gut................. 72 3.5.1 Processes Associated with the Production of N2O... 72 3.5.2 Fermentative and Other Microbial Processes......... 75 3.6 Microbial Populations in the Earthworm Gut............... 76 3.6.1 Quantitative Population Changes During Gut Passage. 77 3.6.2 Qualitative Population Changes Upon Gut Passage... 78 3.6.3 The Quest for an Earthworm-Specific Microbial Population......................................... 79 3.7 Conclusions.............................................. 80 References..................................................... 82 4 Intestinal Microbiota of Millipedes 89 Boris A. Byzov 4.1 Introduction............................................. 89 4.2 Structure and Function of the Digestive Tract............ 90 4.3 Physiological Conditions in the Gut...................... 92 4.4 Microscope Studies of Intestinal Microbiota.............. 93 4.4.1 Bacteria........................................... 93 4.4.2 Yeasts............................................. 95 4.4.3 Mycelial Fungi..................................... 95 4.5 Taxonomic Studies of Intestinal Microbiota............... 95 4.5.1 Bacteria.......................................... 101 4.5.2 Fungi............................................. 103 4.6 Functions of the Intestinal Microbiota.................. 104 Contents XI 4.6.1 Digestive Functions of Gut Microorganisms......... 104 4.6.2 Intestinal Microbiota as a Food for Millipedes....107 4.6.3 Resistance to Colonization.........................107 4.6.4 Intestinal Microbiota as a Pathogenic Agent........108 4.7 Digestion of Microorganisms by Millipedes................109 4.7.1 Killing Activity of the Midgut Fluid.............. 109 4.7.2 Killing Effect.....................................109 4.7.3 Properties of the Killing Compound(s)..............110 4.7.4 Induced Autolysis..................................110 4.7.5 Assimilation of Microorganisms.....................110 4.8 Conclusions..............................................Ill References....................................................112 5 Intestinal Microbiota of Terrestrial Isopods 115 Rok Kostanjšek, Jasna Štrus, Aleš Lapanje, Gorazd Avguštin, Maja Rupnik, Damjana Drobne 5.1 Introduction............................................ 115 5.2 Structure and Function of the Digestive System...........116 5.3 The Microbiota of the Digestive System...................119 5.3.1 Bacteria in the Gut................................119 5.3.2 Fungi and Protozoa in the Gut......................122 5.3.3 Bacteria in the Midgut Glands......................123 5.3.4 Infections of the Digestive System.................124 5.4 Conclusions..............................................125 References.................................................... 126 6 Collembola as a Habitat for Microorganisms 133 Christoph C. Tebbe, Alice B. Czarnetzki, Torsten Thimm 6.1 Introduction - Diversity and Activity of Collembola..... 133 6.2 The Gut of Folsomia Candida - an Unusual Microbial Habitat That Is Affected by Moulting............................ 136 6.3 Feeding Preferences of Folsomia Candida and Fate of Ingested Bacterial Cells.................... 139 6.4 The Gut of Collembola: a Hot Spot for Conjugative Gene Transfer Between Bacteria.......... 141 6.5 Diversity of Microorganisms in the Gut of F. Candida and Other Collembola.......................144 6.6 Collembola Can Harbour the Reproduction Parasite Wolbachia and Other Intracellular Bacteria...............146 6.7 Conclusions............................................. 149 References.....................................................150 XII Contents 7 Methane Production by Terrestrial Arthropods 155 Johannes H. P. Hackstein, Theo A. van Alen, Jorg Rosenberg 7.1 Introduction.............................................155 7.2 Symbiotic Methanogens and Terrestrial Arthropods.........156 7.3 Why Do Certain Arthropods Make Methane and Others Not? 159 7.4 “Small Is Beautiful”: The Elusive Co-Existence of Aerobes and Anaerobes in Arthropod Guts.........................167 7.5 Longitudinal Differentiation of the Intestinal Tract of Methanogenic Arthropods..............................172 7.6 Intercompartment Hydrogen Transfer.......................172 7.7 Differentiations of the Intestinal Tract to Host Methanogenic Archaea (and Other Prokaryotes).........................173 7.8 Biodiversity of Intestinal and Endosymbiotic Methanogens .. 175 7.9 Conclusions..............................................176 References................................................... 177 Part II Termites as Model Organisms 8 Termites as Soil Engineers and Soil Processors 183 David E. Bignell 8.1 Introduction.............................................183 8.2 Current State of Termite Science........................ 185 8.3 Termite Biology and Evolution........................... 190 8.4 Soil Ecosystem Engineers: Is This a Valid Concept?.......193 8.5 Microbial Processing During Gut Transit...........198 8.6 The Special Case of Fungus-Growing Termites..............201 8.7 The Fate of Termite Faeces...............................203 8.8 Evidence of the Role of Termites in Pedogenesis and Soil Properties......................................205 8.8.1 Soil Profile Development...........................206 8.8.2 Bulk Density and Structural Stability of Mound Materials.................................207 8.8.3 Permeability to Water..............................208 8.8.4 Soil Chemistry.....................................209 8.8.5 Organic Matter Decomposition.......................209 8.9 Conclusions..............................................210 References....................................................212 9 Cellulose Digestion in the Termite Gut 221 Li Li, Jürgen Fröhlich, Helmut König 9.1 Introduction.............................................221 Contents XIII 9.2 Termite’s Cellulases.....................................223 9.3 Microbial Cellulases in the Hindgut.......................225 9.4 Cellulose Digestion in the Termite Mastotermes darwiniensis..................................228 9.4.1 Termites’ and Flagellates’ Cellulases...............228 9.4.2 Comparison of Termite’s Cellulases....,............229 9.4.3 Comparison of Archaezoan Cellulases.................235 9.5 Conclusions...............................................236 References......................................................238 10 Symbiotic Protozoa of Termites 243 Guy Brugerolle, Renate Radek 10.1 Introduction..............................................243 10.2 Diversity, Cytology and Phylogeny of Symbiotic Protozoa in Lower Termites.........................................243 10.2.1 Cell Organisation in Oxymonad and Parabasalid Termite Flagellates.................................244 10.3 Biology of Termite Flagellates............................253 10.3.1 Relationships Between Flagellates and Host.........253 10.3.2 Populations of Flagellates.........................256 10.3.3 Nutrition..........................................257 10.3.4 Energy Metabolism/Hydrogenosomes...................259 10.3.5 Motility...........................................260 10.3.6 Associations with Bacteria.........................262 10.4 Conclusion................................................264 References......................................................264 11 Diversity and Lignocellulolytic Activities of Cultured Microorganisms 271 Helmut König, Jürgen Fröhlich, Horst Hertel 11.1 Introduction..............................................271 11.2 Flagellates...............................................272 11.3 Bacteria..................................................272 11.4 Archaea...................................................273 11.5 Yeasts and Fungi..........................................273 11.6 Microhabitats.............................................281 11.7 Lignocellulose Degradation................................284 11.7.1 The Hydrolytic Stage of Lignocellulose Degradation... 284 11.7.2 The Oxidative/Fermentative Stage of Lignocellulose Degradation.......................290 11.7.3 The Methanogenic/Acetogenic Stage of the Lignocellulose Degradation...................290 XIV Contents 11.8 Nitrogen Fixing Bacteria.................................292 11.9 Intracellular Symbiosis..................................293 11.10 Conclusions.............................................293 References.....................................................294 12 Diversity and Molecular Analyses of Yet-Uncultivated Microorganisms 303 Moriya Ohkuma, Yuichi Hongoh, Toshiaki Kudo 12.1 Introduction.............................................303 12.2 Phylogenetic Identification of Symbiotic Protists........304 12.3 Methanogenic Archaea.....................................305 12.4 Diversity of Eubacteria..................................305 12.5 Spatial Organization of Gut Community....................309 12.6 Toward the Function of Gut Symbionts.....................311 12.7 Conclusions..............................................313 References.....................................................314 13 The Intestinal Yeasts 319 Hansjörg Prillittger, Helmut König 13.1 Introduction.............................................319 13.2 Morphological Characterization...........................319 13.3 Phenotypic and Genotypic Characterization................322 13.4 Cellulose and Hemicellulose-Degrading Yeasts.............323 13.5 Evolutionary Considerations..............................326 13.6 Conclusions..............................................330 References.....................................................331 14 Termitomyces/Termite Interactions 335 Corinne Rouland-Lejevre, Tetsushi lnoue, Toru ]ohjima 14.1 Introduction.............................................335 14.2 Phylogeny and Co-Evolution of Fungus-Growing Termites and Termitomyces..........................................336 14.2.1 The Symbionts......................................336 14.2.2 Evolution of Fungus-Growing Termites and Termitomyces....................................337 14.3 The Role of Termitomyces in Mutualistic Symbiosis........338 14.3.1 Nature, Structure and Dynamics of the Fungus Comb. 338 14.3.2 Role of Termitomyces in the Digestive Metabolism of Termites.........................................340 14.4 Conclusions..............................................347 References.....................................................347 Contents XV 15 Microbiology of Termite Hill (Mound) and Soil 351 Rina Kumari, Minu Sachdev, Shweta Sharma, Ram Prasad, Pham Huong Giang, Amar P. Garg, Ajit Varma 15.1 Introduction.............................................351 15.2 Features Distinguishing Termites from Other Insects......352 15.3 Current Taxonomic Status................... ............352 15.4 Ecophysiological Distribution............................354 15.5 Termite Colonies and Castes..............................354 15.6 Life Cycle...............................................358 15.7 Topography of the Termite Hill (Mound) and Nest..........358 15.8 Microorganism from the Termite Soil......................359 15.9 Soil-Feeding Termites....................................363 15.10 Fungus-Growing Termites.................................364 15.11 Chemical Nature of Lignocellulose.......................365 15.11.1Cellulose.........................................365 15.11.2Hemicellulose.....................................366 15.11.3 Lignin...........................................367 15.12 Biodegradation of Biomass...............................368 15.13 Conclusions.............................................369 References....................................................369 16 The Termite Gut Habitat: Its Evolution and Co-Evolution 373 Paul Eggleton 16.1 Introduction.............................................373 16.2 Background: Some Definitions.............................373 16.2.1 Termite Biology...................................373 16.2.2 Which Environments?...............................374 16.2.3 Community Ecology Definitions.....................375 16.3 Biodiversity of Termite Guts.............................377 16.4 The Termite Gut Habitat and its Evolution................382 16.5 Acquisition of Symbionts in Basal Dicytopterans..........384 16.6 Evolution of Key Enzyme Systems: Endoglucanases and Nitrogenases.........................................386 16.7 Blattabacterium..........................................387 16.8 Parabasalids.............................................388 16.9 Termitomyces.............................................392 16.10 Spirochetes.............................................393 16.11 Clostridiales...........................................394 16.12 Archaea.................................................395 16.13 Conclusions.............................................398 References....................................................400 XVI Contents Part III Modern Methods for Studying Intestinal Methods 17 The Microbial Soil Flora: Novel Approaches for Accessing the Phylogenetic and Physiological Diversity of Prokaryotes 407 Alexander H. Treusch, Christa Schleper 17.1 Introduction............................................407 17.2 The Modern Classical Approach...........................408 17.3 How Many Prokaryotic Species Live in Soil?..............409 17.4 Molecular Approaches to Describe Microbial Diversity....411 17.5 The Current Picture of Prokaryotic Diversity in Soil....413 17.6 Studying Physiological Diversity........................415 17.7 Environmental Genomic Studies...........................417 17.8 Conclusions.............................................419 References....................................................420 18 Micromanipulation Techniques for the Isolation of Single Microorganisms 425 Jürgen Fröhlich, Helmut König 18.1 Introduction............................................425 18.2 Micromanipulation Techniques............................426 18.2.1 Historical Perspective...........................426 18.2.2 Modern Equipment.................................427 18.3 Isolation Techniques....................................429 18.3.1 Bactotip Method..................................429 18.3.2 Membrane Method..................................431 18.3.3 Efficiency of the Cloning Procedure..............431 18.3.4 Described Applications...........................432 18.4 Laser Micromanipulation Systems.........................433 18.4.1 Optical Tweezers.................................433 18.4.2 Laser Microdissection............................434 18.5 Conclusions.............................................434 References....................................................435 19 Localization and Visualization of Microbial Community Structure and Activity in Soil Microhabitats 439 Michael Schmid, Draženka Seiest, Michael Rothballer, Michael Schloter, Natuschka Lee, Ellen Kandeler, Anton Hartmann 19.1 Introduction............................................439 19.2 Localization and Microvisualization Approaches..........440 19.3 In Situ Composition Analysis of Bacterial Communities..442 19.3.1 The Fluorescence in Situ Hybridization (FISH) Technique..................................442 Contents XVII 19.3.2 Recent Developments Towards Improved FISH Techniques...................................444 19.3.3 Immunological Techniques.........................448 19.4 In Situ Activity of Microbial Communities..............449 19.4.1 In Situ Assessment of General and Specific Enzymatic Activities of Cells............................. 449 19.4.2 Isotope Tracer Techniques........................450 19.4.3 Specific Fluorescence Labelling/Tagging Techniques... 454 19.5 Conclusions............................................455 References...................................................455 20 Microsensors for the Study of Microenvironments and Processes in the Intestine of Invertebrates 463 Andreas Schramm 20.1 Introduction...........................................463 20.2 Microsensors Available.................................463 20.3 Microsensors in the Study of Invertebrate Guts.........466 20.4 Practical Considerations...............................468 20.4.1 Construction and Purchase of Sensors and Equipment 468 20.4.2 Fixation of Animals, Gut Preparation and Measuring Conditions..........................468 20.5 Conclusions............................................470 References...................................................471 Subject Index 475
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Bodentiere (DE-588)4007414-6 s
Wirbellose (DE-588)4066359-0 s
Darmflora (DE-588)4148805-2 s
Mikroorganismus (DE-588)4039226-0 s
DE-188
Termiten (DE-588)4059505-5 s
König, Helmut Sonstige oth
Soil biology 6 (DE-604)BV019353150 6
KOBV Fremddatenuebernahme application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=017472074&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis
spellingShingle Intestinal microorganisms of termites and other invertebrates
Soil biology
Bodentiere (DE-588)4007414-6 gnd
Darmflora (DE-588)4148805-2 gnd
Wirbellose (DE-588)4066359-0 gnd
Mikroorganismus (DE-588)4039226-0 gnd
Termiten (DE-588)4059505-5 gnd
subject_GND (DE-588)4007414-6
(DE-588)4148805-2
(DE-588)4066359-0
(DE-588)4039226-0
(DE-588)4059505-5
(DE-588)4143413-4
title Intestinal microorganisms of termites and other invertebrates
title_auth Intestinal microorganisms of termites and other invertebrates
title_exact_search Intestinal microorganisms of termites and other invertebrates
title_full Intestinal microorganisms of termites and other invertebrates Helmut König ... (eds.)
title_fullStr Intestinal microorganisms of termites and other invertebrates Helmut König ... (eds.)
title_full_unstemmed Intestinal microorganisms of termites and other invertebrates Helmut König ... (eds.)
title_short Intestinal microorganisms of termites and other invertebrates
title_sort intestinal microorganisms of termites and other invertebrates
topic Bodentiere (DE-588)4007414-6 gnd
Darmflora (DE-588)4148805-2 gnd
Wirbellose (DE-588)4066359-0 gnd
Mikroorganismus (DE-588)4039226-0 gnd
Termiten (DE-588)4059505-5 gnd
topic_facet Bodentiere
Darmflora
Wirbellose
Mikroorganismus
Termiten
Aufsatzsammlung
url http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=017472074&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA
volume_link (DE-604)BV019353150
work_keys_str_mv AT konighelmut intestinalmicroorganismsoftermitesandotherinvertebrates