Genomic signal processing
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Format: | Buch |
Sprache: | English |
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Princeton [u.a.]
Princeton Univ. Press
2007
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Schriftenreihe: | Princeton series in applied mathematics
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Online-Zugang: | Inhaltsverzeichnis |
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100 | 1 | |a Shmulevich, Ilya |e Verfasser |4 aut | |
245 | 1 | 0 | |a Genomic signal processing |c Ilya Shmulevich and Edward R. Dougherty |
264 | 1 | |a Princeton [u.a.] |b Princeton Univ. Press |c 2007 | |
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490 | 0 | |a Princeton series in applied mathematics | |
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650 | 7 | |a Bioinformática |2 larpcal | |
650 | 4 | |a Mathematisches Modell | |
650 | 4 | |a Cellular signal transduction | |
650 | 4 | |a Gene Expression | |
650 | 4 | |a Gene Regulatory Networks | |
650 | 4 | |a Genetic regulation | |
650 | 4 | |a Genomics |x Mathematical models | |
650 | 4 | |a Models, Genetic | |
650 | 4 | |a Models, Statistical | |
650 | 4 | |a Signal Transduction |x genetics | |
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Datensatz im Suchindex
_version_ | 1819667892345503744 |
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adam_text | Genomic Signal Processing
llya Shmulevich and Edward R
Dougherty
G
PRINCETON UNIVERSITY PRESS
PRINCETON AND OXFORD
Contents
Preface ix
1 Biological Foundations
1 1 Genetics 1
1 1 Nucleic Acid Structure 2
1 2 Genes 5
1 3 RNA 6
1 4 Transcription 6
1 5 Proteins 9
1 6 Translation 10
1 7 Transcriptional Regulation 12
1 2 Genomics 16
121 Microarray Technology 17
1 3 Proteomics 20
Bibliography 22
2 Deterministic Models of Gene Networks
2 1 Graph Models
f 23
2 2 Boolean Networks 30
221 Cell Differentiation and Cellular Functional States 33
222 Network Properties and Dynamics 35
223 Network Inference 49
2 3 Generalizations of Boolean Networks 53
231 Asynchrony 53
232 Multivalued Networks 56
2 4 Differential Equation Models 59
241A Differential Equation Model Incorporating Transcription and
Translation 62
242 Discretization of the Continuous Differential Equation Model 65
Bibliography 70
3 Stochastic Models of Gene Networks
3 1 Bayesian Networks 77
3 2 Probabilistic Boolean Networks 83
321 Definitions 86
322 Inference 97
323 Dynamics of PBNs 99
324 Steady-State Analysis of Instantaneously Random PBNs 113
Vi CONTENTS
325 Relationships of PBNs to Bayesian Networks 119
326 Growing Subnetworks from Seed Genes 125
3 3 Intervention 129
331 Gene Intervention 130
332 Structural Intervention 140
333 External Control 145
Bibliography 151
4 Classification
4 1 Bayes Classifier 160
4 2 Classification Rules 162
421 Consistent Classifier Design 162
422 Examples of Classification Rules 166
4 3 Constrained Classifiers 168
431 Shatter Coefficient 171
432 VC Dimension 173
4 4 Linear Classification 176
441 Rosenblatt Perceptron 177
442 Linear and Quadratic Discriminant Analysis 178
443 Linear Discriminants Based on Least-Squares Error 180
444 Support Vector Machines 183
445 Representation of Design Error for Linear Discriminant Analysis 186
446 Distribution of the QDA Sample-Based Discriminant 187
4 5 Neural Networks Classifiers 189
4 6 Classification Trees 192
461 Classification and Regression Trees 193
462 Strongly Consistent Rules for Data-Dependent Partitioning 194
4 7 Error Estimation
o 196
471 Resubstitution ~* 196
5 Regularization
5 1 Data Regularization 225
511 Regularized Discriminant Analysis 225
512 Noise Injection 228
5 2 Complexity Regularization 231
521 Regularization of the Error 231
522 Structural Risk Minimization 233
523 Empirical Complexity 236
Cross-validation
Bootstrap
Bolstering
Error Estimator Performance
Feature Set Ranking
Error Correction
Robust Classifiers
Bibliography
Optimal Robust Classifiers
Performance Comparison for Robust Classifiers
CONTENTS vii
5 3 Feature Selection 237
531 Peaking Phenomenon 237
532 Feature Selection Algorithms 243
533 Impact of Error Estimation on Feature Selection 244
534 Redundancy 245
535 Parallel Incremental Feature Selection 249
536 Bayesian Variable Selection 251
5 4 Feature Extraction 254
Bibliography 259
6 Clustering
6 1 Examples of Clustering Algorithms 263
611 Euclidean Distance Clustering 264
612 Self-Organizing Maps 265
613 Hierarchical Clustering 266
614 Model-Based Cluster Operators 268
6 2 Cluster Operators 269
621 Algorithm Structure 269
622 Label Operators 271
623 Bayes Clusterer 273
624 Distributional Testing of Cluster Operators 274
6 3 Cluster Validation 276
631 External Validation 276
632 Internal Validation 277
633 Instability Index 278
634 Bayes Factor 280
6 4 Learning Cluster Operators 281
641 Empirical-Error Cluster Operator 281
642 Nearest-Neighbor Clustering Rule 283
Bibliography O 292
Index 295
|
any_adam_object | 1 |
author | Shmulevich, Ilya Dougherty, Edward R. |
author_facet | Shmulevich, Ilya Dougherty, Edward R. |
author_role | aut aut |
author_sort | Shmulevich, Ilya |
author_variant | i s is e r d er erd |
building | Verbundindex |
bvnumber | BV022661426 |
callnumber-first | Q - Science |
callnumber-label | QP517 |
callnumber-raw | QP517.C45 |
callnumber-search | QP517.C45 |
callnumber-sort | QP 3517 C45 |
callnumber-subject | QP - Physiology |
classification_rvk | WC 7700 WG 1900 |
ctrlnum | (OCoLC)154694757 (DE-599)BVBBV022661426 |
dewey-full | 572.8/65 571.74 |
dewey-hundreds | 500 - Natural sciences and mathematics |
dewey-ones | 572 - Biochemistry 571 - Physiology & related subjects |
dewey-raw | 572.8/65 571.74 |
dewey-search | 572.8/65 571.74 |
dewey-sort | 3572.8 265 |
dewey-tens | 570 - Biology |
discipline | Biologie |
format | Book |
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id | DE-604.BV022661426 |
illustrated | Illustrated |
indexdate | 2024-12-23T20:22:03Z |
institution | BVB |
isbn | 9780691117621 0691117624 |
language | English |
oai_aleph_id | oai:aleph.bib-bvb.de:BVB01-015867285 |
oclc_num | 154694757 |
open_access_boolean | |
owner | DE-29T DE-20 DE-11 DE-83 |
owner_facet | DE-29T DE-20 DE-11 DE-83 |
physical | XIII, 298 S. graph. Darst. |
publishDate | 2007 |
publishDateSearch | 2007 |
publishDateSort | 2007 |
publisher | Princeton Univ. Press |
record_format | marc |
series2 | Princeton series in applied mathematics |
spellingShingle | Shmulevich, Ilya Dougherty, Edward R. Genomic signal processing Algoritmos e estruturas de dados larpcal Bioinformática larpcal Mathematisches Modell Cellular signal transduction Gene Expression Gene Regulatory Networks Genetic regulation Genomics Mathematical models Models, Genetic Models, Statistical Signal Transduction genetics Signalverarbeitung (DE-588)4054947-1 gnd Genom (DE-588)4156640-3 gnd Signaltransduktion (DE-588)4318717-1 gnd Bioinformatik (DE-588)4611085-9 gnd |
subject_GND | (DE-588)4054947-1 (DE-588)4156640-3 (DE-588)4318717-1 (DE-588)4611085-9 |
title | Genomic signal processing |
title_auth | Genomic signal processing |
title_exact_search | Genomic signal processing |
title_full | Genomic signal processing Ilya Shmulevich and Edward R. Dougherty |
title_fullStr | Genomic signal processing Ilya Shmulevich and Edward R. Dougherty |
title_full_unstemmed | Genomic signal processing Ilya Shmulevich and Edward R. Dougherty |
title_short | Genomic signal processing |
title_sort | genomic signal processing |
topic | Algoritmos e estruturas de dados larpcal Bioinformática larpcal Mathematisches Modell Cellular signal transduction Gene Expression Gene Regulatory Networks Genetic regulation Genomics Mathematical models Models, Genetic Models, Statistical Signal Transduction genetics Signalverarbeitung (DE-588)4054947-1 gnd Genom (DE-588)4156640-3 gnd Signaltransduktion (DE-588)4318717-1 gnd Bioinformatik (DE-588)4611085-9 gnd |
topic_facet | Algoritmos e estruturas de dados Bioinformática Mathematisches Modell Cellular signal transduction Gene Expression Gene Regulatory Networks Genetic regulation Genomics Mathematical models Models, Genetic Models, Statistical Signal Transduction genetics Signalverarbeitung Genom Signaltransduktion Bioinformatik |
url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=015867285&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
work_keys_str_mv | AT shmulevichilya genomicsignalprocessing AT doughertyedwardr genomicsignalprocessing |