Abstract 17157: Improving Cardiac MRI Ventricular Contouring In Tetralogy Of Fallot Using Machine Learning
IntroductionCardiac magnetic resonance imaging (CMR) evaluates ventricular volumes in tetralogy of Fallot (TOF) and is key in deciding timing of pulmonary valve replacement. However, ventricular contouring is time-consuming and has inherent intraobserver and interobserver variability. Recently, mach...
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Veröffentlicht in: | Circulation (New York, N.Y.) N.Y.), 2019-11, Vol.140 (Suppl_1 Suppl 1), p.A17157-A17157 |
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creator | Mohan, Navina Amir-Khalili, Alborz Burkhardt, Barbara E Abou Zahr, Riad Jensen, Cory Hussain, Tarique Greil, Gerald Sojoudi, Alireza Tandon, Animesh |
description | IntroductionCardiac magnetic resonance imaging (CMR) evaluates ventricular volumes in tetralogy of Fallot (TOF) and is key in deciding timing of pulmonary valve replacement. However, ventricular contouring is time-consuming and has inherent intraobserver and interobserver variability. Recently, machine learning neural networks (MLNN) have been developed to automate contouring, but are mostly trained on hearts with normal morphology. These networks work best when trained on data similar to that being contoured. We evaluated whether adding TOF data to the training set would improve ventricular contouring for TOF.HypothesisWe hypothesized that adding TOF datasets to the training set would improve TOF contouring compared to a MLNN trained only on structurally normal hearts.MethodsThe initial MLNN was trained on short axis cine CMR scans of morphologically normal hearts from the UK Biobank, and patients with dilated and hypertrophic cardiomyopathies and myocardial infarction. Left ventricular (LV) epicardial and endocardial borders, and right ventricular (RV) endocardial borders, at end systole (ES) and diastole (ED), were manually contoured by experts for both training and TOF CMRs. Agreement between gold standard manual and MLNN contours was evaluated using Dice similarity coefficient (DSC); DSC=1 is perfect overlap and DSC=0 is no overlap. Wilcoxon rank sum tests were used with p |
doi_str_mv | 10.1161/circ.140.suppl_1.17157 |
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fullrecord | <record><control><sourceid>wolterskluwer</sourceid><recordid>TN_cdi_wolterskluwer_health_00003017-201911191-03864</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>00003017-201911191-03864</sourcerecordid><originalsourceid>FETCH-wolterskluwer_health_00003017-201911191-038643</originalsourceid><addsrcrecordid>eNqdjt1KxDAUhIMoWH9eQc4LpOY0aWu9k-JiwUVYdr0tMWa3WWNSktTFt7crPoEXw3BmzgdDyA2yHLHCW2WCylGwPE7jaHvMscayPiEZloWgouTNKckYYw2teVGck4sY9_NZ8brMyP7hLaYgVYJf6h66zzH4L-N20MrwbqSC5aqDV-1SMGqyMkDrXfJTOL50DtZ6xq3ffcPLFhbSWp9gE4_lUqrBOA3PWgY3B1fkbCtt1Nd_fknE4nHdPtGDt0mH-GGngw79oKVNQz8vZJxhTQuGDeIsyvhdJfg_sR8Vs1gI</addsrcrecordid><sourcetype>Publisher</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>Abstract 17157: Improving Cardiac MRI Ventricular Contouring In Tetralogy Of Fallot Using Machine Learning</title><source>American Heart Association Journals</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>Journals@Ovid Complete</source><creator>Mohan, Navina ; Amir-Khalili, Alborz ; Burkhardt, Barbara E ; Abou Zahr, Riad ; Jensen, Cory ; Hussain, Tarique ; Greil, Gerald ; Sojoudi, Alireza ; Tandon, Animesh</creator><creatorcontrib>Mohan, Navina ; Amir-Khalili, Alborz ; Burkhardt, Barbara E ; Abou Zahr, Riad ; Jensen, Cory ; Hussain, Tarique ; Greil, Gerald ; Sojoudi, Alireza ; Tandon, Animesh</creatorcontrib><description>IntroductionCardiac magnetic resonance imaging (CMR) evaluates ventricular volumes in tetralogy of Fallot (TOF) and is key in deciding timing of pulmonary valve replacement. However, ventricular contouring is time-consuming and has inherent intraobserver and interobserver variability. Recently, machine learning neural networks (MLNN) have been developed to automate contouring, but are mostly trained on hearts with normal morphology. These networks work best when trained on data similar to that being contoured. We evaluated whether adding TOF data to the training set would improve ventricular contouring for TOF.HypothesisWe hypothesized that adding TOF datasets to the training set would improve TOF contouring compared to a MLNN trained only on structurally normal hearts.MethodsThe initial MLNN was trained on short axis cine CMR scans of morphologically normal hearts from the UK Biobank, and patients with dilated and hypertrophic cardiomyopathies and myocardial infarction. Left ventricular (LV) epicardial and endocardial borders, and right ventricular (RV) endocardial borders, at end systole (ES) and diastole (ED), were manually contoured by experts for both training and TOF CMRs. Agreement between gold standard manual and MLNN contours was evaluated using Dice similarity coefficient (DSC); DSC=1 is perfect overlap and DSC=0 is no overlap. Wilcoxon rank sum tests were used with p<0.05 being considered significant. The MLNN was retrained using TOF datasets and then the original TOF datasets were recontoured.Results26 patients were included. Initially, the median DSC comparing MLNN and manual TOF contours ranged from 0.807-0.901. When the MLNN was retrained using TOF cases, the DSC improved significantly for all contours to 0.862-0.940 (p<0.001 for all 6 comparisons, Figure 1).ConclusionsMLNN can be improved for use in congenital heart disease by adding appropriate training datasets. Further generalization of the MLNN will be investigated.</description><identifier>ISSN: 0009-7322</identifier><identifier>EISSN: 1524-4539</identifier><identifier>DOI: 10.1161/circ.140.suppl_1.17157</identifier><language>eng</language><publisher>by the American College of Cardiology Foundation and the American Heart Association, Inc</publisher><ispartof>Circulation (New York, N.Y.), 2019-11, Vol.140 (Suppl_1 Suppl 1), p.A17157-A17157</ispartof><rights>2019 by the American College of Cardiology Foundation and the American Heart Association, Inc.</rights><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,777,781,27905,27906</link.rule.ids></links><search><creatorcontrib>Mohan, Navina</creatorcontrib><creatorcontrib>Amir-Khalili, Alborz</creatorcontrib><creatorcontrib>Burkhardt, Barbara E</creatorcontrib><creatorcontrib>Abou Zahr, Riad</creatorcontrib><creatorcontrib>Jensen, Cory</creatorcontrib><creatorcontrib>Hussain, Tarique</creatorcontrib><creatorcontrib>Greil, Gerald</creatorcontrib><creatorcontrib>Sojoudi, Alireza</creatorcontrib><creatorcontrib>Tandon, Animesh</creatorcontrib><title>Abstract 17157: Improving Cardiac MRI Ventricular Contouring In Tetralogy Of Fallot Using Machine Learning</title><title>Circulation (New York, N.Y.)</title><description>IntroductionCardiac magnetic resonance imaging (CMR) evaluates ventricular volumes in tetralogy of Fallot (TOF) and is key in deciding timing of pulmonary valve replacement. However, ventricular contouring is time-consuming and has inherent intraobserver and interobserver variability. Recently, machine learning neural networks (MLNN) have been developed to automate contouring, but are mostly trained on hearts with normal morphology. These networks work best when trained on data similar to that being contoured. We evaluated whether adding TOF data to the training set would improve ventricular contouring for TOF.HypothesisWe hypothesized that adding TOF datasets to the training set would improve TOF contouring compared to a MLNN trained only on structurally normal hearts.MethodsThe initial MLNN was trained on short axis cine CMR scans of morphologically normal hearts from the UK Biobank, and patients with dilated and hypertrophic cardiomyopathies and myocardial infarction. Left ventricular (LV) epicardial and endocardial borders, and right ventricular (RV) endocardial borders, at end systole (ES) and diastole (ED), were manually contoured by experts for both training and TOF CMRs. Agreement between gold standard manual and MLNN contours was evaluated using Dice similarity coefficient (DSC); DSC=1 is perfect overlap and DSC=0 is no overlap. Wilcoxon rank sum tests were used with p<0.05 being considered significant. The MLNN was retrained using TOF datasets and then the original TOF datasets were recontoured.Results26 patients were included. Initially, the median DSC comparing MLNN and manual TOF contours ranged from 0.807-0.901. When the MLNN was retrained using TOF cases, the DSC improved significantly for all contours to 0.862-0.940 (p<0.001 for all 6 comparisons, Figure 1).ConclusionsMLNN can be improved for use in congenital heart disease by adding appropriate training datasets. Further generalization of the MLNN will be investigated.</description><issn>0009-7322</issn><issn>1524-4539</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid/><recordid>eNqdjt1KxDAUhIMoWH9eQc4LpOY0aWu9k-JiwUVYdr0tMWa3WWNSktTFt7crPoEXw3BmzgdDyA2yHLHCW2WCylGwPE7jaHvMscayPiEZloWgouTNKckYYw2teVGck4sY9_NZ8brMyP7hLaYgVYJf6h66zzH4L-N20MrwbqSC5aqDV-1SMGqyMkDrXfJTOL50DtZ6xq3ffcPLFhbSWp9gE4_lUqrBOA3PWgY3B1fkbCtt1Nd_fknE4nHdPtGDt0mH-GGngw79oKVNQz8vZJxhTQuGDeIsyvhdJfg_sR8Vs1gI</recordid><startdate>20191119</startdate><enddate>20191119</enddate><creator>Mohan, Navina</creator><creator>Amir-Khalili, Alborz</creator><creator>Burkhardt, Barbara E</creator><creator>Abou Zahr, Riad</creator><creator>Jensen, Cory</creator><creator>Hussain, Tarique</creator><creator>Greil, Gerald</creator><creator>Sojoudi, Alireza</creator><creator>Tandon, Animesh</creator><general>by the American College of Cardiology Foundation and the American Heart Association, Inc</general><scope/></search><sort><creationdate>20191119</creationdate><title>Abstract 17157: Improving Cardiac MRI Ventricular Contouring In Tetralogy Of Fallot Using Machine Learning</title><author>Mohan, Navina ; Amir-Khalili, Alborz ; Burkhardt, Barbara E ; Abou Zahr, Riad ; Jensen, Cory ; Hussain, Tarique ; Greil, Gerald ; Sojoudi, Alireza ; Tandon, Animesh</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-wolterskluwer_health_00003017-201911191-038643</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><toplevel>online_resources</toplevel><creatorcontrib>Mohan, Navina</creatorcontrib><creatorcontrib>Amir-Khalili, Alborz</creatorcontrib><creatorcontrib>Burkhardt, Barbara E</creatorcontrib><creatorcontrib>Abou Zahr, Riad</creatorcontrib><creatorcontrib>Jensen, Cory</creatorcontrib><creatorcontrib>Hussain, Tarique</creatorcontrib><creatorcontrib>Greil, Gerald</creatorcontrib><creatorcontrib>Sojoudi, Alireza</creatorcontrib><creatorcontrib>Tandon, Animesh</creatorcontrib><jtitle>Circulation (New York, N.Y.)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Mohan, Navina</au><au>Amir-Khalili, Alborz</au><au>Burkhardt, Barbara E</au><au>Abou Zahr, Riad</au><au>Jensen, Cory</au><au>Hussain, Tarique</au><au>Greil, Gerald</au><au>Sojoudi, Alireza</au><au>Tandon, Animesh</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Abstract 17157: Improving Cardiac MRI Ventricular Contouring In Tetralogy Of Fallot Using Machine Learning</atitle><jtitle>Circulation (New York, N.Y.)</jtitle><date>2019-11-19</date><risdate>2019</risdate><volume>140</volume><issue>Suppl_1 Suppl 1</issue><spage>A17157</spage><epage>A17157</epage><pages>A17157-A17157</pages><issn>0009-7322</issn><eissn>1524-4539</eissn><abstract>IntroductionCardiac magnetic resonance imaging (CMR) evaluates ventricular volumes in tetralogy of Fallot (TOF) and is key in deciding timing of pulmonary valve replacement. However, ventricular contouring is time-consuming and has inherent intraobserver and interobserver variability. Recently, machine learning neural networks (MLNN) have been developed to automate contouring, but are mostly trained on hearts with normal morphology. These networks work best when trained on data similar to that being contoured. We evaluated whether adding TOF data to the training set would improve ventricular contouring for TOF.HypothesisWe hypothesized that adding TOF datasets to the training set would improve TOF contouring compared to a MLNN trained only on structurally normal hearts.MethodsThe initial MLNN was trained on short axis cine CMR scans of morphologically normal hearts from the UK Biobank, and patients with dilated and hypertrophic cardiomyopathies and myocardial infarction. Left ventricular (LV) epicardial and endocardial borders, and right ventricular (RV) endocardial borders, at end systole (ES) and diastole (ED), were manually contoured by experts for both training and TOF CMRs. Agreement between gold standard manual and MLNN contours was evaluated using Dice similarity coefficient (DSC); DSC=1 is perfect overlap and DSC=0 is no overlap. Wilcoxon rank sum tests were used with p<0.05 being considered significant. The MLNN was retrained using TOF datasets and then the original TOF datasets were recontoured.Results26 patients were included. Initially, the median DSC comparing MLNN and manual TOF contours ranged from 0.807-0.901. When the MLNN was retrained using TOF cases, the DSC improved significantly for all contours to 0.862-0.940 (p<0.001 for all 6 comparisons, Figure 1).ConclusionsMLNN can be improved for use in congenital heart disease by adding appropriate training datasets. Further generalization of the MLNN will be investigated.</abstract><pub>by the American College of Cardiology Foundation and the American Heart Association, Inc</pub><doi>10.1161/circ.140.suppl_1.17157</doi></addata></record> |
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title | Abstract 17157: Improving Cardiac MRI Ventricular Contouring In Tetralogy Of Fallot Using Machine Learning |
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