Picroscope: low-cost system for simultaneous longitudinal biological imaging
Simultaneous longitudinal imaging across multiple conditions and replicates has been crucial for scientific studies aiming to understand biological processes and disease. Yet, imaging systems capable of accomplishing these tasks are economically unattainable for most academic and teaching laboratori...
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Veröffentlicht in: | Communications biology 2021-11, Vol.4 (1), p.1261-11, Article 1261 |
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creator | Ly, Victoria T. Baudin, Pierre V. Pansodtee, Pattawong Jung, Erik A. Voitiuk, Kateryna Rosen, Yohei M. Willsey, Helen Rankin Mantalas, Gary L. Seiler, Spencer T. Selberg, John A. Cordero, Sergio A. Ross, Jayden M. Rolandi, Marco Pollen, Alex A. Nowakowski, Tomasz J. Haussler, David Mostajo-Radji, Mohammed A. Salama, Sofie R. Teodorescu, Mircea |
description | Simultaneous longitudinal imaging across multiple conditions and replicates has been crucial for scientific studies aiming to understand biological processes and disease. Yet, imaging systems capable of accomplishing these tasks are economically unattainable for most academic and teaching laboratories around the world. Here, we propose the Picroscope, which is the first low-cost system for simultaneous longitudinal biological imaging made primarily using off-the-shelf and 3D-printed materials. The Picroscope is compatible with standard 24-well cell culture plates and captures 3D z-stack image data. The Picroscope can be controlled remotely, allowing for automatic imaging with minimal intervention from the investigator. Here, we use this system in a range of applications. We gathered longitudinal whole organism image data for frogs, zebrafish, and planaria worms. We also gathered image data inside an incubator to observe 2D monolayers and 3D mammalian tissue culture models. Using this tool, we can measure the behavior of entire organisms or individual cells over long-time periods.
Ly et al. report a multi-well imaging system (the Picroscope) that can perform longitudinal bright-field z-stack imaging for 24 wells simultaneously. They demonstrate its capability by imaging zebrafish embryos, planaria worms, development of Xenopus tropicalis over a 28-h period and embryonic stem cell monolayer and organoids inside an incubator. |
doi_str_mv | 10.1038/s42003-021-02779-7 |
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Ly et al. report a multi-well imaging system (the Picroscope) that can perform longitudinal bright-field z-stack imaging for 24 wells simultaneously. They demonstrate its capability by imaging zebrafish embryos, planaria worms, development of Xenopus tropicalis over a 28-h period and embryonic stem cell monolayer and organoids inside an incubator.</description><identifier>ISSN: 2399-3642</identifier><identifier>EISSN: 2399-3642</identifier><identifier>DOI: 10.1038/s42003-021-02779-7</identifier><identifier>PMID: 34737378</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>631/136 ; 631/1647 ; Animals ; Behavior, Animal ; Biology ; Biomedical and Life Sciences ; Cell culture ; Danio rerio ; Embryo cells ; Embryogenesis ; Imaging, Three-Dimensional - methods ; Life Sciences ; Mammals - physiology ; Organoids ; Organoids - physiology ; Planarians - anatomy & histology ; Planarians - physiology ; Stem cells ; Tissue culture ; Xenopus - anatomy & histology ; Xenopus - physiology ; Zebrafish - anatomy & histology ; Zebrafish - physiology</subject><ispartof>Communications biology, 2021-11, Vol.4 (1), p.1261-11, Article 1261</ispartof><rights>The Author(s) 2021</rights><rights>2021. The Author(s).</rights><rights>The Author(s) 2021. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c540t-7b675896ac85eb0d93ca0d85c147ec9542d210d9972a324823da83ef6c9450be3</citedby><cites>FETCH-LOGICAL-c540t-7b675896ac85eb0d93ca0d85c147ec9542d210d9972a324823da83ef6c9450be3</cites><orcidid>0000-0001-7085-5248 ; 0000-0003-1533-4575 ; 0000-0002-1634-7514 ; 0000-0002-6392-5188 ; 0000-0003-3263-8634 ; 0000-0003-4408-777X ; 0000-0001-6999-7193</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8569150/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8569150/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2096,27901,27902,41096,42165,51551,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/34737378$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ly, Victoria T.</creatorcontrib><creatorcontrib>Baudin, Pierre V.</creatorcontrib><creatorcontrib>Pansodtee, Pattawong</creatorcontrib><creatorcontrib>Jung, Erik A.</creatorcontrib><creatorcontrib>Voitiuk, Kateryna</creatorcontrib><creatorcontrib>Rosen, Yohei M.</creatorcontrib><creatorcontrib>Willsey, Helen Rankin</creatorcontrib><creatorcontrib>Mantalas, Gary L.</creatorcontrib><creatorcontrib>Seiler, Spencer T.</creatorcontrib><creatorcontrib>Selberg, John A.</creatorcontrib><creatorcontrib>Cordero, Sergio A.</creatorcontrib><creatorcontrib>Ross, Jayden M.</creatorcontrib><creatorcontrib>Rolandi, Marco</creatorcontrib><creatorcontrib>Pollen, Alex A.</creatorcontrib><creatorcontrib>Nowakowski, Tomasz J.</creatorcontrib><creatorcontrib>Haussler, David</creatorcontrib><creatorcontrib>Mostajo-Radji, Mohammed A.</creatorcontrib><creatorcontrib>Salama, Sofie R.</creatorcontrib><creatorcontrib>Teodorescu, Mircea</creatorcontrib><title>Picroscope: low-cost system for simultaneous longitudinal biological imaging</title><title>Communications biology</title><addtitle>Commun Biol</addtitle><addtitle>Commun Biol</addtitle><description>Simultaneous longitudinal imaging across multiple conditions and replicates has been crucial for scientific studies aiming to understand biological processes and disease. Yet, imaging systems capable of accomplishing these tasks are economically unattainable for most academic and teaching laboratories around the world. Here, we propose the Picroscope, which is the first low-cost system for simultaneous longitudinal biological imaging made primarily using off-the-shelf and 3D-printed materials. The Picroscope is compatible with standard 24-well cell culture plates and captures 3D z-stack image data. The Picroscope can be controlled remotely, allowing for automatic imaging with minimal intervention from the investigator. Here, we use this system in a range of applications. We gathered longitudinal whole organism image data for frogs, zebrafish, and planaria worms. We also gathered image data inside an incubator to observe 2D monolayers and 3D mammalian tissue culture models. Using this tool, we can measure the behavior of entire organisms or individual cells over long-time periods.
Ly et al. report a multi-well imaging system (the Picroscope) that can perform longitudinal bright-field z-stack imaging for 24 wells simultaneously. They demonstrate its capability by imaging zebrafish embryos, planaria worms, development of Xenopus tropicalis over a 28-h period and embryonic stem cell monolayer and organoids inside an incubator.</description><subject>631/136</subject><subject>631/1647</subject><subject>Animals</subject><subject>Behavior, Animal</subject><subject>Biology</subject><subject>Biomedical and Life Sciences</subject><subject>Cell culture</subject><subject>Danio rerio</subject><subject>Embryo cells</subject><subject>Embryogenesis</subject><subject>Imaging, Three-Dimensional - methods</subject><subject>Life Sciences</subject><subject>Mammals - physiology</subject><subject>Organoids</subject><subject>Organoids - physiology</subject><subject>Planarians - anatomy & histology</subject><subject>Planarians - physiology</subject><subject>Stem cells</subject><subject>Tissue culture</subject><subject>Xenopus - anatomy & histology</subject><subject>Xenopus - physiology</subject><subject>Zebrafish - anatomy & histology</subject><subject>Zebrafish - 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methods</topic><topic>Life Sciences</topic><topic>Mammals - physiology</topic><topic>Organoids</topic><topic>Organoids - physiology</topic><topic>Planarians - anatomy & histology</topic><topic>Planarians - physiology</topic><topic>Stem cells</topic><topic>Tissue culture</topic><topic>Xenopus - anatomy & histology</topic><topic>Xenopus - physiology</topic><topic>Zebrafish - anatomy & histology</topic><topic>Zebrafish - physiology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ly, Victoria T.</creatorcontrib><creatorcontrib>Baudin, Pierre V.</creatorcontrib><creatorcontrib>Pansodtee, Pattawong</creatorcontrib><creatorcontrib>Jung, Erik A.</creatorcontrib><creatorcontrib>Voitiuk, Kateryna</creatorcontrib><creatorcontrib>Rosen, Yohei M.</creatorcontrib><creatorcontrib>Willsey, Helen Rankin</creatorcontrib><creatorcontrib>Mantalas, Gary L.</creatorcontrib><creatorcontrib>Seiler, Spencer T.</creatorcontrib><creatorcontrib>Selberg, John A.</creatorcontrib><creatorcontrib>Cordero, Sergio A.</creatorcontrib><creatorcontrib>Ross, Jayden M.</creatorcontrib><creatorcontrib>Rolandi, Marco</creatorcontrib><creatorcontrib>Pollen, Alex A.</creatorcontrib><creatorcontrib>Nowakowski, Tomasz J.</creatorcontrib><creatorcontrib>Haussler, David</creatorcontrib><creatorcontrib>Mostajo-Radji, Mohammed A.</creatorcontrib><creatorcontrib>Salama, Sofie R.</creatorcontrib><creatorcontrib>Teodorescu, Mircea</creatorcontrib><collection>Springer Nature OA Free Journals</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>Coronavirus Research Database</collection><collection>ProQuest Central Korea</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Science Database</collection><collection>Biological Science Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Communications biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ly, Victoria T.</au><au>Baudin, Pierre V.</au><au>Pansodtee, Pattawong</au><au>Jung, Erik A.</au><au>Voitiuk, Kateryna</au><au>Rosen, Yohei M.</au><au>Willsey, Helen Rankin</au><au>Mantalas, Gary L.</au><au>Seiler, Spencer T.</au><au>Selberg, John A.</au><au>Cordero, Sergio A.</au><au>Ross, Jayden M.</au><au>Rolandi, Marco</au><au>Pollen, Alex A.</au><au>Nowakowski, Tomasz J.</au><au>Haussler, David</au><au>Mostajo-Radji, Mohammed A.</au><au>Salama, Sofie R.</au><au>Teodorescu, Mircea</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Picroscope: low-cost system for simultaneous longitudinal biological imaging</atitle><jtitle>Communications biology</jtitle><stitle>Commun Biol</stitle><addtitle>Commun Biol</addtitle><date>2021-11-04</date><risdate>2021</risdate><volume>4</volume><issue>1</issue><spage>1261</spage><epage>11</epage><pages>1261-11</pages><artnum>1261</artnum><issn>2399-3642</issn><eissn>2399-3642</eissn><abstract>Simultaneous longitudinal imaging across multiple conditions and replicates has been crucial for scientific studies aiming to understand biological processes and disease. Yet, imaging systems capable of accomplishing these tasks are economically unattainable for most academic and teaching laboratories around the world. Here, we propose the Picroscope, which is the first low-cost system for simultaneous longitudinal biological imaging made primarily using off-the-shelf and 3D-printed materials. The Picroscope is compatible with standard 24-well cell culture plates and captures 3D z-stack image data. The Picroscope can be controlled remotely, allowing for automatic imaging with minimal intervention from the investigator. Here, we use this system in a range of applications. We gathered longitudinal whole organism image data for frogs, zebrafish, and planaria worms. We also gathered image data inside an incubator to observe 2D monolayers and 3D mammalian tissue culture models. Using this tool, we can measure the behavior of entire organisms or individual cells over long-time periods.
Ly et al. report a multi-well imaging system (the Picroscope) that can perform longitudinal bright-field z-stack imaging for 24 wells simultaneously. They demonstrate its capability by imaging zebrafish embryos, planaria worms, development of Xenopus tropicalis over a 28-h period and embryonic stem cell monolayer and organoids inside an incubator.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>34737378</pmid><doi>10.1038/s42003-021-02779-7</doi><tpages>11</tpages><orcidid>https://orcid.org/0000-0001-7085-5248</orcidid><orcidid>https://orcid.org/0000-0003-1533-4575</orcidid><orcidid>https://orcid.org/0000-0002-1634-7514</orcidid><orcidid>https://orcid.org/0000-0002-6392-5188</orcidid><orcidid>https://orcid.org/0000-0003-3263-8634</orcidid><orcidid>https://orcid.org/0000-0003-4408-777X</orcidid><orcidid>https://orcid.org/0000-0001-6999-7193</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | 631/136 631/1647 Animals Behavior, Animal Biology Biomedical and Life Sciences Cell culture Danio rerio Embryo cells Embryogenesis Imaging, Three-Dimensional - methods Life Sciences Mammals - physiology Organoids Organoids - physiology Planarians - anatomy & histology Planarians - physiology Stem cells Tissue culture Xenopus - anatomy & histology Xenopus - physiology Zebrafish - anatomy & histology Zebrafish - physiology |
title | Picroscope: low-cost system for simultaneous longitudinal biological imaging |
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