High expression of COMMD7 is an adverse prognostic factor in acute myeloid leukemia

Acute myeloid leukemia (AML) is a frequent malignancy in adults worldwide; identifying preferable biomarkers has become one of the current challenges. Given that COMMD7 has been reported associated with tumor progression in various human solid cancers but rarely reported in AML, herein, RNA sequenci...

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Veröffentlicht in:Aging (Albany, NY.) NY.), 2021-04, Vol.13 (8), p.11988-12006
Hauptverfasser: Li, Kongfei, Chen, Lieguang, Zhang, Hua, Wang, Lu, Sha, Keya, Du, Xiaohong, Li, Daiyang, Zheng, Zhongzheng, Zhang, Pisheng, Pei, Renzhi, Lu, Ying, Tong, Hongyan
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container_issue 8
container_start_page 11988
container_title Aging (Albany, NY.)
container_volume 13
creator Li, Kongfei
Chen, Lieguang
Zhang, Hua
Wang, Lu
Sha, Keya
Du, Xiaohong
Li, Daiyang
Zheng, Zhongzheng
Zhang, Pisheng
Pei, Renzhi
Lu, Ying
Tong, Hongyan
description Acute myeloid leukemia (AML) is a frequent malignancy in adults worldwide; identifying preferable biomarkers has become one of the current challenges. Given that COMMD7 has been reported associated with tumor progression in various human solid cancers but rarely reported in AML, herein, RNA sequencing data from TCGA and GTEx were obtained for analysis of COMMD7 expression and differentially expressed gene (DEG). Furthermore, functional enrichment analysis of COMMD7-related DEGs was performed by GO/KEGG, GSEA, immune cell infiltration analysis, and protein-protein interaction (PPI) network. In addition, the clinical significance of COMMD7 in AML was figured out by Kaplan-Meier Cox regression and prognostic nomogram model. R package was used to analyze incorporated studies. As a result, COMMD7 was highly expressed in various malignancies, including AML, compared with normal samples. Moreover, high expression of COMMD7 was associated with poor prognosis in 151 AML samples, as well as subgroups with age 60, NPM1 mutation positive, FLT3 mutation-negative, and DNMT3A mutation-negative, et al. (P < 0.05). High COMMD7 was an independent prognostic factor in Cox regression analysis; Age and cytogenetics risk were included in the nomogram prognostic model. Furthermore, a total of 529 DEGs were identified between the high-and the low expression group, of which 92 genes were up-regulated and 437 genes were down-regulated. Collectively, high expression of COMMD7 is a potential biomarker for adverse outcomes in AML. The DEGs and pathways recognized in the study provide a preliminary grasp of the underlying molecular mechanisms of AML carcinogenesis and progression.
doi_str_mv 10.18632/aging.202901
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Given that COMMD7 has been reported associated with tumor progression in various human solid cancers but rarely reported in AML, herein, RNA sequencing data from TCGA and GTEx were obtained for analysis of COMMD7 expression and differentially expressed gene (DEG). Furthermore, functional enrichment analysis of COMMD7-related DEGs was performed by GO/KEGG, GSEA, immune cell infiltration analysis, and protein-protein interaction (PPI) network. In addition, the clinical significance of COMMD7 in AML was figured out by Kaplan-Meier Cox regression and prognostic nomogram model. R package was used to analyze incorporated studies. As a result, COMMD7 was highly expressed in various malignancies, including AML, compared with normal samples. Moreover, high expression of COMMD7 was associated with poor prognosis in 151 AML samples, as well as subgroups with age 60, NPM1 mutation positive, FLT3 mutation-negative, and DNMT3A mutation-negative, et al. (P &lt; 0.05). High COMMD7 was an independent prognostic factor in Cox regression analysis; Age and cytogenetics risk were included in the nomogram prognostic model. Furthermore, a total of 529 DEGs were identified between the high-and the low expression group, of which 92 genes were up-regulated and 437 genes were down-regulated. Collectively, high expression of COMMD7 is a potential biomarker for adverse outcomes in AML. 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identifying preferable biomarkers has become one of the current challenges. Given that COMMD7 has been reported associated with tumor progression in various human solid cancers but rarely reported in AML, herein, RNA sequencing data from TCGA and GTEx were obtained for analysis of COMMD7 expression and differentially expressed gene (DEG). Furthermore, functional enrichment analysis of COMMD7-related DEGs was performed by GO/KEGG, GSEA, immune cell infiltration analysis, and protein-protein interaction (PPI) network. In addition, the clinical significance of COMMD7 in AML was figured out by Kaplan-Meier Cox regression and prognostic nomogram model. R package was used to analyze incorporated studies. As a result, COMMD7 was highly expressed in various malignancies, including AML, compared with normal samples. Moreover, high expression of COMMD7 was associated with poor prognosis in 151 AML samples, as well as subgroups with age 60, NPM1 mutation positive, FLT3 mutation-negative, and DNMT3A mutation-negative, et al. (P &lt; 0.05). High COMMD7 was an independent prognostic factor in Cox regression analysis; Age and cytogenetics risk were included in the nomogram prognostic model. Furthermore, a total of 529 DEGs were identified between the high-and the low expression group, of which 92 genes were up-regulated and 437 genes were down-regulated. Collectively, high expression of COMMD7 is a potential biomarker for adverse outcomes in AML. The DEGs and pathways recognized in the study provide a preliminary grasp of the underlying molecular mechanisms of AML carcinogenesis and progression.</abstract><cop>ORCHARD PARK</cop><pub>Impact Journals Llc</pub><pmid>33891561</pmid><doi>10.18632/aging.202901</doi><tpages>19</tpages><oa>free_for_read</oa></addata></record>
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subjects Adaptor Proteins, Signal Transducing - genetics
Biomarkers, Tumor - genetics
Cell Biology
Computational Biology
Datasets as Topic
Female
Gene Expression Profiling
Gene Expression Regulation, Leukemic
Gene Regulatory Networks
Geriatrics & Gerontology
Humans
Kaplan-Meier Estimate
Leukemia, Myeloid, Acute - genetics
Leukemia, Myeloid, Acute - mortality
Leukemia, Myeloid, Acute - pathology
Life Sciences & Biomedicine
Male
Middle Aged
Nucleophosmin
Prognosis
Protein Interaction Maps - genetics
Research Paper
RNA-Seq
Science & Technology
Up-Regulation
title High expression of COMMD7 is an adverse prognostic factor in acute myeloid leukemia
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