High expression of COMMD7 is an adverse prognostic factor in acute myeloid leukemia
Acute myeloid leukemia (AML) is a frequent malignancy in adults worldwide; identifying preferable biomarkers has become one of the current challenges. Given that COMMD7 has been reported associated with tumor progression in various human solid cancers but rarely reported in AML, herein, RNA sequenci...
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Veröffentlicht in: | Aging (Albany, NY.) NY.), 2021-04, Vol.13 (8), p.11988-12006 |
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description | Acute myeloid leukemia (AML) is a frequent malignancy in adults worldwide; identifying preferable biomarkers has become one of the current challenges. Given that COMMD7 has been reported associated with tumor progression in various human solid cancers but rarely reported in AML, herein, RNA sequencing data from TCGA and GTEx were obtained for analysis of COMMD7 expression and differentially expressed gene (DEG). Furthermore, functional enrichment analysis of COMMD7-related DEGs was performed by GO/KEGG, GSEA, immune cell infiltration analysis, and protein-protein interaction (PPI) network. In addition, the clinical significance of COMMD7 in AML was figured out by Kaplan-Meier Cox regression and prognostic nomogram model. R package was used to analyze incorporated studies. As a result, COMMD7 was highly expressed in various malignancies, including AML, compared with normal samples. Moreover, high expression of COMMD7 was associated with poor prognosis in 151 AML samples, as well as subgroups with age 60, NPM1 mutation positive, FLT3 mutation-negative, and DNMT3A mutation-negative, et al. (P < 0.05). High COMMD7 was an independent prognostic factor in Cox regression analysis; Age and cytogenetics risk were included in the nomogram prognostic model. Furthermore, a total of 529 DEGs were identified between the high-and the low expression group, of which 92 genes were up-regulated and 437 genes were down-regulated. Collectively, high expression of COMMD7 is a potential biomarker for adverse outcomes in AML. The DEGs and pathways recognized in the study provide a preliminary grasp of the underlying molecular mechanisms of AML carcinogenesis and progression. |
doi_str_mv | 10.18632/aging.202901 |
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fullrecord | <record><control><sourceid>pubmed_webof</sourceid><recordid>TN_cdi_webofscience_primary_000646307000010</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>33891561</sourcerecordid><originalsourceid>FETCH-LOGICAL-c387t-8668f58cea21d2c20097ae5c2b6dc28a805abac7a83e650c328654874120073f3</originalsourceid><addsrcrecordid>eNqNkUtLxDAUhYMojq-lW8leqnk0aboRpD5BmYW6Lpn0thNtmyHpjPrvDVMddOfqHrjfPRfOQeiYkjOqJGfnurF9c8YIywndQns0T0WSCpVv_9ITtB_CKyFSiFTuognnKqdC0j30dGebOYaPhYcQrOuxq3ExfXy8yrANWPdYVyvwAfDCu6Z3YbAG19oMzmMbl2Y5AO4-oXW2wi0s36Cz-hDt1LoNcPQ9D9DLzfVzcZc8TG_vi8uHxHCVDYmSUtVCGdCMVswwQvJMgzBsJivDlFZE6Jk2mVYcpCCGMyVFqrKURjTjNT9AF6PvYjnroDLQD1635cLbTvvP0mlb_t30dl42blUqSnKiWDRIRgPjXQge6s0tJeU63XKdbjmmG_mT3w839E-cETgdgXeYuToYC72BDUZiAankJIuCUBJp9X-6sIMeYkGFW_YD_wKfQZfY</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>High expression of COMMD7 is an adverse prognostic factor in acute myeloid leukemia</title><source>MEDLINE</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>PubMed Central Open Access</source><source>Web of Science - Science Citation Index Expanded - 2021<img src="https://exlibris-pub.s3.amazonaws.com/fromwos-v2.jpg" /></source><source>PubMed Central</source><creator>Li, Kongfei ; Chen, Lieguang ; Zhang, Hua ; Wang, Lu ; Sha, Keya ; Du, Xiaohong ; Li, Daiyang ; Zheng, Zhongzheng ; Zhang, Pisheng ; Pei, Renzhi ; Lu, Ying ; Tong, Hongyan</creator><creatorcontrib>Li, Kongfei ; Chen, Lieguang ; Zhang, Hua ; Wang, Lu ; Sha, Keya ; Du, Xiaohong ; Li, Daiyang ; Zheng, Zhongzheng ; Zhang, Pisheng ; Pei, Renzhi ; Lu, Ying ; Tong, Hongyan</creatorcontrib><description>Acute myeloid leukemia (AML) is a frequent malignancy in adults worldwide; identifying preferable biomarkers has become one of the current challenges. Given that COMMD7 has been reported associated with tumor progression in various human solid cancers but rarely reported in AML, herein, RNA sequencing data from TCGA and GTEx were obtained for analysis of COMMD7 expression and differentially expressed gene (DEG). Furthermore, functional enrichment analysis of COMMD7-related DEGs was performed by GO/KEGG, GSEA, immune cell infiltration analysis, and protein-protein interaction (PPI) network. In addition, the clinical significance of COMMD7 in AML was figured out by Kaplan-Meier Cox regression and prognostic nomogram model. R package was used to analyze incorporated studies. As a result, COMMD7 was highly expressed in various malignancies, including AML, compared with normal samples. Moreover, high expression of COMMD7 was associated with poor prognosis in 151 AML samples, as well as subgroups with age 60, NPM1 mutation positive, FLT3 mutation-negative, and DNMT3A mutation-negative, et al. (P < 0.05). High COMMD7 was an independent prognostic factor in Cox regression analysis; Age and cytogenetics risk were included in the nomogram prognostic model. Furthermore, a total of 529 DEGs were identified between the high-and the low expression group, of which 92 genes were up-regulated and 437 genes were down-regulated. Collectively, high expression of COMMD7 is a potential biomarker for adverse outcomes in AML. The DEGs and pathways recognized in the study provide a preliminary grasp of the underlying molecular mechanisms of AML carcinogenesis and progression.</description><identifier>ISSN: 1945-4589</identifier><identifier>EISSN: 1945-4589</identifier><identifier>DOI: 10.18632/aging.202901</identifier><identifier>PMID: 33891561</identifier><language>eng</language><publisher>ORCHARD PARK: Impact Journals Llc</publisher><subject>Adaptor Proteins, Signal Transducing - genetics ; Biomarkers, Tumor - genetics ; Cell Biology ; Computational Biology ; Datasets as Topic ; Female ; Gene Expression Profiling ; Gene Expression Regulation, Leukemic ; Gene Regulatory Networks ; Geriatrics & Gerontology ; Humans ; Kaplan-Meier Estimate ; Leukemia, Myeloid, Acute - genetics ; Leukemia, Myeloid, Acute - mortality ; Leukemia, Myeloid, Acute - pathology ; Life Sciences & Biomedicine ; Male ; Middle Aged ; Nucleophosmin ; Prognosis ; Protein Interaction Maps - genetics ; Research Paper ; RNA-Seq ; Science & Technology ; Up-Regulation</subject><ispartof>Aging (Albany, NY.), 2021-04, Vol.13 (8), p.11988-12006</ispartof><rights>Copyright: © 2021 Li et al.</rights><oa>free_for_read</oa><woscitedreferencessubscribed>true</woscitedreferencessubscribed><woscitedreferencescount>11</woscitedreferencescount><woscitedreferencesoriginalsourcerecordid>wos000646307000010</woscitedreferencesoriginalsourcerecordid><citedby>FETCH-LOGICAL-c387t-8668f58cea21d2c20097ae5c2b6dc28a805abac7a83e650c328654874120073f3</citedby><cites>FETCH-LOGICAL-c387t-8668f58cea21d2c20097ae5c2b6dc28a805abac7a83e650c328654874120073f3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8109082/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8109082/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,315,728,781,785,886,27929,27930,39263,53796,53798</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33891561$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Li, Kongfei</creatorcontrib><creatorcontrib>Chen, Lieguang</creatorcontrib><creatorcontrib>Zhang, Hua</creatorcontrib><creatorcontrib>Wang, Lu</creatorcontrib><creatorcontrib>Sha, Keya</creatorcontrib><creatorcontrib>Du, Xiaohong</creatorcontrib><creatorcontrib>Li, Daiyang</creatorcontrib><creatorcontrib>Zheng, Zhongzheng</creatorcontrib><creatorcontrib>Zhang, Pisheng</creatorcontrib><creatorcontrib>Pei, Renzhi</creatorcontrib><creatorcontrib>Lu, Ying</creatorcontrib><creatorcontrib>Tong, Hongyan</creatorcontrib><title>High expression of COMMD7 is an adverse prognostic factor in acute myeloid leukemia</title><title>Aging (Albany, NY.)</title><addtitle>AGING-US</addtitle><addtitle>Aging (Albany NY)</addtitle><description>Acute myeloid leukemia (AML) is a frequent malignancy in adults worldwide; identifying preferable biomarkers has become one of the current challenges. Given that COMMD7 has been reported associated with tumor progression in various human solid cancers but rarely reported in AML, herein, RNA sequencing data from TCGA and GTEx were obtained for analysis of COMMD7 expression and differentially expressed gene (DEG). Furthermore, functional enrichment analysis of COMMD7-related DEGs was performed by GO/KEGG, GSEA, immune cell infiltration analysis, and protein-protein interaction (PPI) network. In addition, the clinical significance of COMMD7 in AML was figured out by Kaplan-Meier Cox regression and prognostic nomogram model. R package was used to analyze incorporated studies. As a result, COMMD7 was highly expressed in various malignancies, including AML, compared with normal samples. Moreover, high expression of COMMD7 was associated with poor prognosis in 151 AML samples, as well as subgroups with age 60, NPM1 mutation positive, FLT3 mutation-negative, and DNMT3A mutation-negative, et al. (P < 0.05). High COMMD7 was an independent prognostic factor in Cox regression analysis; Age and cytogenetics risk were included in the nomogram prognostic model. Furthermore, a total of 529 DEGs were identified between the high-and the low expression group, of which 92 genes were up-regulated and 437 genes were down-regulated. Collectively, high expression of COMMD7 is a potential biomarker for adverse outcomes in AML. The DEGs and pathways recognized in the study provide a preliminary grasp of the underlying molecular mechanisms of AML carcinogenesis and progression.</description><subject>Adaptor Proteins, Signal Transducing - genetics</subject><subject>Biomarkers, Tumor - genetics</subject><subject>Cell Biology</subject><subject>Computational Biology</subject><subject>Datasets as Topic</subject><subject>Female</subject><subject>Gene Expression Profiling</subject><subject>Gene Expression Regulation, Leukemic</subject><subject>Gene Regulatory Networks</subject><subject>Geriatrics & Gerontology</subject><subject>Humans</subject><subject>Kaplan-Meier Estimate</subject><subject>Leukemia, Myeloid, Acute - genetics</subject><subject>Leukemia, Myeloid, Acute - mortality</subject><subject>Leukemia, Myeloid, Acute - pathology</subject><subject>Life Sciences & Biomedicine</subject><subject>Male</subject><subject>Middle Aged</subject><subject>Nucleophosmin</subject><subject>Prognosis</subject><subject>Protein Interaction Maps - genetics</subject><subject>Research Paper</subject><subject>RNA-Seq</subject><subject>Science & Technology</subject><subject>Up-Regulation</subject><issn>1945-4589</issn><issn>1945-4589</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>HGBXW</sourceid><sourceid>EIF</sourceid><recordid>eNqNkUtLxDAUhYMojq-lW8leqnk0aboRpD5BmYW6Lpn0thNtmyHpjPrvDVMddOfqHrjfPRfOQeiYkjOqJGfnurF9c8YIywndQns0T0WSCpVv_9ITtB_CKyFSiFTuognnKqdC0j30dGebOYaPhYcQrOuxq3ExfXy8yrANWPdYVyvwAfDCu6Z3YbAG19oMzmMbl2Y5AO4-oXW2wi0s36Cz-hDt1LoNcPQ9D9DLzfVzcZc8TG_vi8uHxHCVDYmSUtVCGdCMVswwQvJMgzBsJivDlFZE6Jk2mVYcpCCGMyVFqrKURjTjNT9AF6PvYjnroDLQD1635cLbTvvP0mlb_t30dl42blUqSnKiWDRIRgPjXQge6s0tJeU63XKdbjmmG_mT3w839E-cETgdgXeYuToYC72BDUZiAankJIuCUBJp9X-6sIMeYkGFW_YD_wKfQZfY</recordid><startdate>20210423</startdate><enddate>20210423</enddate><creator>Li, Kongfei</creator><creator>Chen, Lieguang</creator><creator>Zhang, Hua</creator><creator>Wang, Lu</creator><creator>Sha, Keya</creator><creator>Du, Xiaohong</creator><creator>Li, Daiyang</creator><creator>Zheng, Zhongzheng</creator><creator>Zhang, Pisheng</creator><creator>Pei, Renzhi</creator><creator>Lu, Ying</creator><creator>Tong, Hongyan</creator><general>Impact Journals Llc</general><general>Impact Journals</general><scope>BLEPL</scope><scope>DTL</scope><scope>HGBXW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>5PM</scope></search><sort><creationdate>20210423</creationdate><title>High expression of COMMD7 is an adverse prognostic factor in acute myeloid leukemia</title><author>Li, Kongfei ; Chen, Lieguang ; Zhang, Hua ; Wang, Lu ; Sha, Keya ; Du, Xiaohong ; Li, Daiyang ; Zheng, Zhongzheng ; Zhang, Pisheng ; Pei, Renzhi ; Lu, Ying ; Tong, Hongyan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c387t-8668f58cea21d2c20097ae5c2b6dc28a805abac7a83e650c328654874120073f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Adaptor Proteins, Signal Transducing - genetics</topic><topic>Biomarkers, Tumor - genetics</topic><topic>Cell Biology</topic><topic>Computational Biology</topic><topic>Datasets as Topic</topic><topic>Female</topic><topic>Gene Expression Profiling</topic><topic>Gene Expression Regulation, Leukemic</topic><topic>Gene Regulatory Networks</topic><topic>Geriatrics & Gerontology</topic><topic>Humans</topic><topic>Kaplan-Meier Estimate</topic><topic>Leukemia, Myeloid, Acute - genetics</topic><topic>Leukemia, Myeloid, Acute - mortality</topic><topic>Leukemia, Myeloid, Acute - pathology</topic><topic>Life Sciences & Biomedicine</topic><topic>Male</topic><topic>Middle Aged</topic><topic>Nucleophosmin</topic><topic>Prognosis</topic><topic>Protein Interaction Maps - genetics</topic><topic>Research Paper</topic><topic>RNA-Seq</topic><topic>Science & Technology</topic><topic>Up-Regulation</topic><toplevel>online_resources</toplevel><creatorcontrib>Li, Kongfei</creatorcontrib><creatorcontrib>Chen, Lieguang</creatorcontrib><creatorcontrib>Zhang, Hua</creatorcontrib><creatorcontrib>Wang, Lu</creatorcontrib><creatorcontrib>Sha, Keya</creatorcontrib><creatorcontrib>Du, Xiaohong</creatorcontrib><creatorcontrib>Li, Daiyang</creatorcontrib><creatorcontrib>Zheng, Zhongzheng</creatorcontrib><creatorcontrib>Zhang, Pisheng</creatorcontrib><creatorcontrib>Pei, Renzhi</creatorcontrib><creatorcontrib>Lu, Ying</creatorcontrib><creatorcontrib>Tong, Hongyan</creatorcontrib><collection>Web of Science Core Collection</collection><collection>Science Citation Index Expanded</collection><collection>Web of Science - Science Citation Index Expanded - 2021</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Aging (Albany, NY.)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Li, Kongfei</au><au>Chen, Lieguang</au><au>Zhang, Hua</au><au>Wang, Lu</au><au>Sha, Keya</au><au>Du, Xiaohong</au><au>Li, Daiyang</au><au>Zheng, Zhongzheng</au><au>Zhang, Pisheng</au><au>Pei, Renzhi</au><au>Lu, Ying</au><au>Tong, Hongyan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>High expression of COMMD7 is an adverse prognostic factor in acute myeloid leukemia</atitle><jtitle>Aging (Albany, NY.)</jtitle><stitle>AGING-US</stitle><addtitle>Aging (Albany NY)</addtitle><date>2021-04-23</date><risdate>2021</risdate><volume>13</volume><issue>8</issue><spage>11988</spage><epage>12006</epage><pages>11988-12006</pages><issn>1945-4589</issn><eissn>1945-4589</eissn><abstract>Acute myeloid leukemia (AML) is a frequent malignancy in adults worldwide; identifying preferable biomarkers has become one of the current challenges. Given that COMMD7 has been reported associated with tumor progression in various human solid cancers but rarely reported in AML, herein, RNA sequencing data from TCGA and GTEx were obtained for analysis of COMMD7 expression and differentially expressed gene (DEG). Furthermore, functional enrichment analysis of COMMD7-related DEGs was performed by GO/KEGG, GSEA, immune cell infiltration analysis, and protein-protein interaction (PPI) network. In addition, the clinical significance of COMMD7 in AML was figured out by Kaplan-Meier Cox regression and prognostic nomogram model. R package was used to analyze incorporated studies. As a result, COMMD7 was highly expressed in various malignancies, including AML, compared with normal samples. Moreover, high expression of COMMD7 was associated with poor prognosis in 151 AML samples, as well as subgroups with age 60, NPM1 mutation positive, FLT3 mutation-negative, and DNMT3A mutation-negative, et al. (P < 0.05). High COMMD7 was an independent prognostic factor in Cox regression analysis; Age and cytogenetics risk were included in the nomogram prognostic model. Furthermore, a total of 529 DEGs were identified between the high-and the low expression group, of which 92 genes were up-regulated and 437 genes were down-regulated. Collectively, high expression of COMMD7 is a potential biomarker for adverse outcomes in AML. The DEGs and pathways recognized in the study provide a preliminary grasp of the underlying molecular mechanisms of AML carcinogenesis and progression.</abstract><cop>ORCHARD PARK</cop><pub>Impact Journals Llc</pub><pmid>33891561</pmid><doi>10.18632/aging.202901</doi><tpages>19</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Adaptor Proteins, Signal Transducing - genetics Biomarkers, Tumor - genetics Cell Biology Computational Biology Datasets as Topic Female Gene Expression Profiling Gene Expression Regulation, Leukemic Gene Regulatory Networks Geriatrics & Gerontology Humans Kaplan-Meier Estimate Leukemia, Myeloid, Acute - genetics Leukemia, Myeloid, Acute - mortality Leukemia, Myeloid, Acute - pathology Life Sciences & Biomedicine Male Middle Aged Nucleophosmin Prognosis Protein Interaction Maps - genetics Research Paper RNA-Seq Science & Technology Up-Regulation |
title | High expression of COMMD7 is an adverse prognostic factor in acute myeloid leukemia |
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