Phylogenetic diversity of two geographically overlapping lichens: isolation by distance, environment, or fragmentation?

Aim Phylogenetic diversification is a precursor to speciation, but the underlying patterns and processes are not well‐studied in lichens. Here we investigate what factors drive diversification in two tropical, morphologically similar macrolichens that occupy a similar range but differ in altitudinal...

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Veröffentlicht in:Journal of biogeography 2021-03, Vol.48 (3), p.676-689
Hauptverfasser: Moncada, Bibiana, Mercado‐Díaz, Joel A., Magain, Nicolas, Hodkinson, Brendan P., Smith, Clifford W., Bungartz, Frank, Pérez‐Pérez, Rosa‐Emilia, Gumboski, Emerson, Sérusiaux, Emmanuël, Lumbsch, H. Thorsten, Lücking, Robert
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container_issue 3
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container_title Journal of biogeography
container_volume 48
creator Moncada, Bibiana
Mercado‐Díaz, Joel A.
Magain, Nicolas
Hodkinson, Brendan P.
Smith, Clifford W.
Bungartz, Frank
Pérez‐Pérez, Rosa‐Emilia
Gumboski, Emerson
Sérusiaux, Emmanuël
Lumbsch, H. Thorsten
Lücking, Robert
description Aim Phylogenetic diversification is a precursor to speciation, but the underlying patterns and processes are not well‐studied in lichens. Here we investigate what factors drive diversification in two tropical, morphologically similar macrolichens that occupy a similar range but differ in altitudinal and habitat preferences, testing for isolation by distance (IBD), environment (IBE), and fragmentation (IBF). Location Neotropics, Hawaii, Macaronesia. Taxon Sticta andina, S. scabrosa (Peltigeraceae). Methods We analysed 395 specimens from 135 localities, using the fungal ITS barcoding marker to assess phylogenetic diversification, through maximum likelihood tree reconstruction, TCS haplotype networks, and Tajima's D. Mantel tests were employed to detect structure in genetic vs. geographic, environmental, and fragmentation distances. Habitat preferences were quantitatively assessed by statistical analysis of locality‐based BIOclim variables. Results Sticta andina exhibited high phenotypic variation and reticulate phylogenetic diversity across its range, whereas the phenotypically uniform S. scabrosa contained two main haplotypes, one unique to Hawaii. Sticta andina is restricted to well‐preserved andine forests and paramos, naturally fragmented habitats due to disruptive topology, whereas S. scabrosa thrives in lowland to lower montane zones in exposed or disturbed microsites, representing a continuous habitat. Sticta scabrosa showed IBD only across its full range (separating the Hawaiian population) but not within continental Central and South America, there exhibiting a negative Tajima's D. Sticta andina did not exhibit IBD but IBE at continental level and IBF in the northern Andes. Main conclusions Autecology, particularly preference for either low or high altitudes, indirectly drives phylogenetic diversification. Low diversification in the low altitude species, S. scabrosa, can be attributed to rapid expansion and effective gene flow across a more or less continuous niche due to disturbance tolerance. In contract, high diversification in the high altitude species, S. andina, can be explained by niche differentiation (IBE) and fragmentation (IBF) caused by the Andean uplift.
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Thorsten ; Lücking, Robert</creator><creatorcontrib>Moncada, Bibiana ; Mercado‐Díaz, Joel A. ; Magain, Nicolas ; Hodkinson, Brendan P. ; Smith, Clifford W. ; Bungartz, Frank ; Pérez‐Pérez, Rosa‐Emilia ; Gumboski, Emerson ; Sérusiaux, Emmanuël ; Lumbsch, H. Thorsten ; Lücking, Robert</creatorcontrib><description>Aim Phylogenetic diversification is a precursor to speciation, but the underlying patterns and processes are not well‐studied in lichens. Here we investigate what factors drive diversification in two tropical, morphologically similar macrolichens that occupy a similar range but differ in altitudinal and habitat preferences, testing for isolation by distance (IBD), environment (IBE), and fragmentation (IBF). Location Neotropics, Hawaii, Macaronesia. Taxon Sticta andina, S. scabrosa (Peltigeraceae). Methods We analysed 395 specimens from 135 localities, using the fungal ITS barcoding marker to assess phylogenetic diversification, through maximum likelihood tree reconstruction, TCS haplotype networks, and Tajima's D. Mantel tests were employed to detect structure in genetic vs. geographic, environmental, and fragmentation distances. Habitat preferences were quantitatively assessed by statistical analysis of locality‐based BIOclim variables. Results Sticta andina exhibited high phenotypic variation and reticulate phylogenetic diversity across its range, whereas the phenotypically uniform S. scabrosa contained two main haplotypes, one unique to Hawaii. Sticta andina is restricted to well‐preserved andine forests and paramos, naturally fragmented habitats due to disruptive topology, whereas S. scabrosa thrives in lowland to lower montane zones in exposed or disturbed microsites, representing a continuous habitat. Sticta scabrosa showed IBD only across its full range (separating the Hawaiian population) but not within continental Central and South America, there exhibiting a negative Tajima's D. Sticta andina did not exhibit IBD but IBE at continental level and IBF in the northern Andes. Main conclusions Autecology, particularly preference for either low or high altitudes, indirectly drives phylogenetic diversification. Low diversification in the low altitude species, S. scabrosa, can be attributed to rapid expansion and effective gene flow across a more or less continuous niche due to disturbance tolerance. In contract, high diversification in the high altitude species, S. andina, can be explained by niche differentiation (IBE) and fragmentation (IBF) caused by the Andean uplift.</description><identifier>ISSN: 0305-0270</identifier><identifier>ISSN: 1365-2699</identifier><identifier>EISSN: 1365-2699</identifier><identifier>DOI: 10.1111/jbi.14033</identifier><language>eng</language><publisher>HOBOKEN: Wiley</publisher><subject>Altitude ; Autecology ; Biologie végétale (sciences végétales, sylviculture, mycologie...) ; Brazil ; Diversification ; drift ; Ecology ; Environmental Sciences &amp; Ecology ; Fragmentation ; Galapagos ; Gene flow ; Geography, Physical ; Habitat fragmentation ; Habitat preferences ; Habitats ; Haplotypes ; High altitude ; Lichens ; Life sciences ; Life Sciences &amp; Biomedicine ; Low altitude ; Mexico ; Mountain environments ; Niches ; Phenotypic variations ; Phylogenetics ; Phylogeny ; Physical Geography ; Physical Sciences ; Phytobiology (plant sciences, forestry, mycology...) ; Puerto Rico ; Sagraea scabrosa ; Science &amp; Technology ; Sciences du vivant ; Speciation ; Statistical analysis ; Sticta ; Topology</subject><ispartof>Journal of biogeography, 2021-03, Vol.48 (3), p.676-689</ispartof><rights>2020 The Authors. published by John Wiley &amp; Sons Ltd</rights><rights>2020. 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Thorsten</creatorcontrib><creatorcontrib>Lücking, Robert</creatorcontrib><title>Phylogenetic diversity of two geographically overlapping lichens: isolation by distance, environment, or fragmentation?</title><title>Journal of biogeography</title><addtitle>J BIOGEOGR</addtitle><description>Aim Phylogenetic diversification is a precursor to speciation, but the underlying patterns and processes are not well‐studied in lichens. Here we investigate what factors drive diversification in two tropical, morphologically similar macrolichens that occupy a similar range but differ in altitudinal and habitat preferences, testing for isolation by distance (IBD), environment (IBE), and fragmentation (IBF). Location Neotropics, Hawaii, Macaronesia. Taxon Sticta andina, S. scabrosa (Peltigeraceae). Methods We analysed 395 specimens from 135 localities, using the fungal ITS barcoding marker to assess phylogenetic diversification, through maximum likelihood tree reconstruction, TCS haplotype networks, and Tajima's D. Mantel tests were employed to detect structure in genetic vs. geographic, environmental, and fragmentation distances. Habitat preferences were quantitatively assessed by statistical analysis of locality‐based BIOclim variables. Results Sticta andina exhibited high phenotypic variation and reticulate phylogenetic diversity across its range, whereas the phenotypically uniform S. scabrosa contained two main haplotypes, one unique to Hawaii. Sticta andina is restricted to well‐preserved andine forests and paramos, naturally fragmented habitats due to disruptive topology, whereas S. scabrosa thrives in lowland to lower montane zones in exposed or disturbed microsites, representing a continuous habitat. Sticta scabrosa showed IBD only across its full range (separating the Hawaiian population) but not within continental Central and South America, there exhibiting a negative Tajima's D. Sticta andina did not exhibit IBD but IBE at continental level and IBF in the northern Andes. Main conclusions Autecology, particularly preference for either low or high altitudes, indirectly drives phylogenetic diversification. Low diversification in the low altitude species, S. scabrosa, can be attributed to rapid expansion and effective gene flow across a more or less continuous niche due to disturbance tolerance. In contract, high diversification in the high altitude species, S. andina, can be explained by niche differentiation (IBE) and fragmentation (IBF) caused by the Andean uplift.</description><subject>Altitude</subject><subject>Autecology</subject><subject>Biologie végétale (sciences végétales, sylviculture, mycologie...)</subject><subject>Brazil</subject><subject>Diversification</subject><subject>drift</subject><subject>Ecology</subject><subject>Environmental Sciences &amp; Ecology</subject><subject>Fragmentation</subject><subject>Galapagos</subject><subject>Gene flow</subject><subject>Geography, Physical</subject><subject>Habitat fragmentation</subject><subject>Habitat preferences</subject><subject>Habitats</subject><subject>Haplotypes</subject><subject>High altitude</subject><subject>Lichens</subject><subject>Life sciences</subject><subject>Life Sciences &amp; Biomedicine</subject><subject>Low altitude</subject><subject>Mexico</subject><subject>Mountain environments</subject><subject>Niches</subject><subject>Phenotypic variations</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Physical Geography</subject><subject>Physical Sciences</subject><subject>Phytobiology (plant sciences, forestry, mycology...)</subject><subject>Puerto Rico</subject><subject>Sagraea scabrosa</subject><subject>Science &amp; Technology</subject><subject>Sciences du vivant</subject><subject>Speciation</subject><subject>Statistical analysis</subject><subject>Sticta</subject><subject>Topology</subject><issn>0305-0270</issn><issn>1365-2699</issn><issn>1365-2699</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><sourceid>WIN</sourceid><sourceid>HGBXW</sourceid><recordid>eNqNkUtv1DAUhS0EEkPbBf_AEitE0_oVT8IGlRGPokqwKGvLca4zHrl2sDMzyr_H01TskOqNr-3vXB3fg9BbSq5oWde7zl1RQTh_gVaUy7pism1fohXhpK4IW5PX6E3OO0JIW3OxQsdf29nHAQJMzuDeHSBlN804WjwdIx4gDkmPW2e09-W2PHs9ji4M2DuzhZA_Ypej15OLAXdz6ZAnHQxcYggHl2J4gDBd4piwTXo4HR7RT-foldU-w8XTfoZ-f_1yv_le3f38dru5uasMX0teNdD1RghJWlpT3fWUN6bpKNRSWytsY_qaWlML0dJOS2osMQyIFb0gumcC-BniS1_vYAAVU-fUgamo3VLv_aC0UR0oxmSjWC05XxfVu0U1pvhnD3lSu7hPoRhVTLRcCEZaUaj3C2VSzDmBVWNyDzrNihJ1SkOVNNRjGoX9sLBH6KLNxkEZ0j--xCHJ6ResVIQWunk-vXHLTDdxH6YivX6SOg_z_x2pH59vF2t_ASIlrro</recordid><startdate>202103</startdate><enddate>202103</enddate><creator>Moncada, Bibiana</creator><creator>Mercado‐Díaz, Joel A.</creator><creator>Magain, Nicolas</creator><creator>Hodkinson, Brendan P.</creator><creator>Smith, Clifford W.</creator><creator>Bungartz, Frank</creator><creator>Pérez‐Pérez, Rosa‐Emilia</creator><creator>Gumboski, Emerson</creator><creator>Sérusiaux, Emmanuël</creator><creator>Lumbsch, H. 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Thorsten</au><au>Lücking, Robert</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Phylogenetic diversity of two geographically overlapping lichens: isolation by distance, environment, or fragmentation?</atitle><jtitle>Journal of biogeography</jtitle><stitle>J BIOGEOGR</stitle><date>2021-03</date><risdate>2021</risdate><volume>48</volume><issue>3</issue><spage>676</spage><epage>689</epage><pages>676-689</pages><issn>0305-0270</issn><issn>1365-2699</issn><eissn>1365-2699</eissn><abstract>Aim Phylogenetic diversification is a precursor to speciation, but the underlying patterns and processes are not well‐studied in lichens. Here we investigate what factors drive diversification in two tropical, morphologically similar macrolichens that occupy a similar range but differ in altitudinal and habitat preferences, testing for isolation by distance (IBD), environment (IBE), and fragmentation (IBF). Location Neotropics, Hawaii, Macaronesia. Taxon Sticta andina, S. scabrosa (Peltigeraceae). Methods We analysed 395 specimens from 135 localities, using the fungal ITS barcoding marker to assess phylogenetic diversification, through maximum likelihood tree reconstruction, TCS haplotype networks, and Tajima's D. Mantel tests were employed to detect structure in genetic vs. geographic, environmental, and fragmentation distances. Habitat preferences were quantitatively assessed by statistical analysis of locality‐based BIOclim variables. Results Sticta andina exhibited high phenotypic variation and reticulate phylogenetic diversity across its range, whereas the phenotypically uniform S. scabrosa contained two main haplotypes, one unique to Hawaii. Sticta andina is restricted to well‐preserved andine forests and paramos, naturally fragmented habitats due to disruptive topology, whereas S. scabrosa thrives in lowland to lower montane zones in exposed or disturbed microsites, representing a continuous habitat. Sticta scabrosa showed IBD only across its full range (separating the Hawaiian population) but not within continental Central and South America, there exhibiting a negative Tajima's D. Sticta andina did not exhibit IBD but IBE at continental level and IBF in the northern Andes. Main conclusions Autecology, particularly preference for either low or high altitudes, indirectly drives phylogenetic diversification. Low diversification in the low altitude species, S. scabrosa, can be attributed to rapid expansion and effective gene flow across a more or less continuous niche due to disturbance tolerance. 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subjects Altitude
Autecology
Biologie végétale (sciences végétales, sylviculture, mycologie...)
Brazil
Diversification
drift
Ecology
Environmental Sciences & Ecology
Fragmentation
Galapagos
Gene flow
Geography, Physical
Habitat fragmentation
Habitat preferences
Habitats
Haplotypes
High altitude
Lichens
Life sciences
Life Sciences & Biomedicine
Low altitude
Mexico
Mountain environments
Niches
Phenotypic variations
Phylogenetics
Phylogeny
Physical Geography
Physical Sciences
Phytobiology (plant sciences, forestry, mycology...)
Puerto Rico
Sagraea scabrosa
Science & Technology
Sciences du vivant
Speciation
Statistical analysis
Sticta
Topology
title Phylogenetic diversity of two geographically overlapping lichens: isolation by distance, environment, or fragmentation?
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