Characterization of the complete chloroplast genome of Allium przewalskianum (Amaryllidaceae)
Allium przewalskianum (Amaryllidaceae) is an important vegetable and/or condiment for Tibetans, Indians, and Nepalese in the highlands of the Himalayas. Here, we reported the complete chloroplast genome of A. przewalskianum using the next-generation sequencing method. The size of the chloroplast gen...
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| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2020-01, Vol.5 (1), p.186-187 |
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| creator | Wang, Hongxia Dong, Bao Li, Wenqi Wang, Jiuli Chen, Wenjie |
| description | Allium przewalskianum (Amaryllidaceae) is an important vegetable and/or condiment for Tibetans, Indians, and Nepalese in the highlands of the Himalayas. Here, we reported the complete chloroplast genome of A. przewalskianum using the next-generation sequencing method. The size of the chloroplast genome is 153,509 bp in length, including a large single copy region (LSC) of 82,302 bp, a small single copy region (SSC) of 17,717 bp, and a pair of inverted repeat (IR) regions with 26,745 bp. The A. przewalskianum chloroplast genome encodes 114 genes, including 68 protein-coding genes, 38 tRNA genes, and eight rRNA genes. Phylogenetic tree analysis suggested that A. przewalskianum was closely related to A.ampeloprasum and A.sativum. |
| doi_str_mv | 10.1080/23802359.2019.1698983 |
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Here, we reported the complete chloroplast genome of A. przewalskianum using the next-generation sequencing method. The size of the chloroplast genome is 153,509 bp in length, including a large single copy region (LSC) of 82,302 bp, a small single copy region (SSC) of 17,717 bp, and a pair of inverted repeat (IR) regions with 26,745 bp. The A. przewalskianum chloroplast genome encodes 114 genes, including 68 protein-coding genes, 38 tRNA genes, and eight rRNA genes. Phylogenetic tree analysis suggested that A. przewalskianum was closely related to A.ampeloprasum and A.sativum.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2019.1698983</identifier><identifier>PMID: 33366479</identifier><language>eng</language><publisher>England: Taylor & Francis</publisher><subject>Allium ; Allium przewalskianum ; Amaryllidaceae ; chloroplast genome ; Chloroplasts ; Genomes ; Inverted repeat ; Mitogenome Announcement ; Next-generation sequencing ; phylogenetic tree ; Phylogeny ; rRNA ; tRNA</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2020-01, Vol.5 (1), p.186-187</ispartof><rights>2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2019</rights><rights>2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.</rights><rights>2019 The Author(s). 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Published by Informa UK Limited, trading as Taylor & Francis Group. 2019 The Author(s)</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c510t-32cabbae63f001042a7264ee1eb88858d46487346cb47acce9ba37a6e7c052313</cites><orcidid>0000-0002-7426-8101</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748517/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748517/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,2102,27502,27924,27925,53791,53793,59143,59144</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33366479$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Wang, Hongxia</creatorcontrib><creatorcontrib>Dong, Bao</creatorcontrib><creatorcontrib>Li, Wenqi</creatorcontrib><creatorcontrib>Wang, Jiuli</creatorcontrib><creatorcontrib>Chen, Wenjie</creatorcontrib><title>Characterization of the complete chloroplast genome of Allium przewalskianum (Amaryllidaceae)</title><title>Mitochondrial DNA. 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Phylogenetic tree analysis suggested that A. przewalskianum was closely related to A.ampeloprasum and A.sativum.</description><subject>Allium</subject><subject>Allium przewalskianum</subject><subject>Amaryllidaceae</subject><subject>chloroplast genome</subject><subject>Chloroplasts</subject><subject>Genomes</subject><subject>Inverted repeat</subject><subject>Mitogenome Announcement</subject><subject>Next-generation sequencing</subject><subject>phylogenetic tree</subject><subject>Phylogeny</subject><subject>rRNA</subject><subject>tRNA</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9Uk1vEzEQXSEQrUp_AigSl3JIsD1e23tBRBEflSpxgSOyZp3ZxMG7Dt7dVu2vx0vSquXAyeN5z8_z8YriNWcLzgx7L8AwAWW1EIxXC64qUxl4VpxO-fkEPH8UnxTnfb9jjHEFWlf6ZXECAEpJXZ0WP1dbTOgGSv4OBx-7WWxmw5ZmLrb7QEMOtiGmuA_YD7MNdbGlibIMwY_tbJ_u6AZD_8tjl68XyxbTbYbW6Ajp3aviRZNROj-eZ8WPz5--r77Or759uVwtr-au5GyYg3BY10gKmlwlkwK1UJKIU22MKc1aKmk0SOVqqdE5qmoEjYq0Y6UADmfF5UF3HXFn98lPZdiI3v5NxLSxmAbvAtmaswqMRMmUkYaDKSUTWOuKQZ6Iklnrw0FrP9YtrR11Q8LwRPQp0vmt3cRrq7U0JddZ4OIokOLvkfrBtr53FAJ2FMfeCplb4XmBE_XtP9RdHFOXR2UFKOCagYDMKg8sl2LfJ2oeiuHMTn6w936wkx_s0Q_53ZvHnTy8ut9-Jnw8EHzXxNTiTUxhbQe8zRtvEnbO9xb-_8cfh3zDzg</recordid><startdate>20200102</startdate><enddate>20200102</enddate><creator>Wang, Hongxia</creator><creator>Dong, Bao</creator><creator>Li, Wenqi</creator><creator>Wang, Jiuli</creator><creator>Chen, Wenjie</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0002-7426-8101</orcidid></search><sort><creationdate>20200102</creationdate><title>Characterization of the complete chloroplast genome of Allium przewalskianum (Amaryllidaceae)</title><author>Wang, Hongxia ; Dong, Bao ; Li, Wenqi ; Wang, Jiuli ; Chen, Wenjie</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c510t-32cabbae63f001042a7264ee1eb88858d46487346cb47acce9ba37a6e7c052313</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Allium</topic><topic>Allium przewalskianum</topic><topic>Amaryllidaceae</topic><topic>chloroplast genome</topic><topic>Chloroplasts</topic><topic>Genomes</topic><topic>Inverted repeat</topic><topic>Mitogenome Announcement</topic><topic>Next-generation sequencing</topic><topic>phylogenetic tree</topic><topic>Phylogeny</topic><topic>rRNA</topic><topic>tRNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wang, Hongxia</creatorcontrib><creatorcontrib>Dong, Bao</creatorcontrib><creatorcontrib>Li, Wenqi</creatorcontrib><creatorcontrib>Wang, Jiuli</creatorcontrib><creatorcontrib>Chen, Wenjie</creatorcontrib><collection>Taylor & Francis Open Access</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Technology Research Database</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>Research Library</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Mitochondrial DNA. 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| subjects | Allium Allium przewalskianum Amaryllidaceae chloroplast genome Chloroplasts Genomes Inverted repeat Mitogenome Announcement Next-generation sequencing phylogenetic tree Phylogeny rRNA tRNA |
| title | Characterization of the complete chloroplast genome of Allium przewalskianum (Amaryllidaceae) |
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