Genetic diversity and phylogenetic analysis of 29 Y-STR loci in the Tibetan population from Sichuan Province, Southwest China
Y-Chromosomal short tandem repeat polymorphisms (Y-STRs) are widely applied in human forensic cases and population genetic studies. There is a lack of information about the Sichuan Tibetan population in the Y-STR Haplotype Reference Database (YHRD, https://yhrd.org , release 59). In this study, 502...
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| Veröffentlicht in: | International journal of legal medicine 2020-03, Vol.134 (2), p.513-516 |
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| creator | Song, Feng Xie, Mingkun Xie, Bowen Wang, Shuangshuang Liao, Miao Luo, Haibo |
| description | Y-Chromosomal short tandem repeat polymorphisms (Y-STRs) are widely applied in human forensic cases and population genetic studies. There is a lack of information about the Sichuan Tibetan population in the Y-STR Haplotype Reference Database (YHRD,
https://yhrd.org
, release 59). In this study, 502 unrelated male individuals residing in the Sichuan Province were recruited and genotyped at 29 Y-STR loci. A total of 479 haplotypes were observed, 460 (96.03%) of which were unique. The haplotype diversity (HD) and discrimination capacity (DC) for the Sichuan Tibetan population were 0.9998 and 0.9542, respectively. To reveal the genetic diversities and relationships between the Chinese Sichuan Tibetan and 29 other previously reported populations, forensic parameter analysis, multi-dimensional scaling, and phylogenetic reconstruction were performed. The results showed that the Sichuan Tibetan population was relatively isolated from other populations, suggesting that genetic proximity is in line with geographical boundaries. |
| doi_str_mv | 10.1007/s00414-019-02043-y |
| format | Article |
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https://yhrd.org
, release 59). In this study, 502 unrelated male individuals residing in the Sichuan Province were recruited and genotyped at 29 Y-STR loci. A total of 479 haplotypes were observed, 460 (96.03%) of which were unique. The haplotype diversity (HD) and discrimination capacity (DC) for the Sichuan Tibetan population were 0.9998 and 0.9542, respectively. To reveal the genetic diversities and relationships between the Chinese Sichuan Tibetan and 29 other previously reported populations, forensic parameter analysis, multi-dimensional scaling, and phylogenetic reconstruction were performed. The results showed that the Sichuan Tibetan population was relatively isolated from other populations, suggesting that genetic proximity is in line with geographical boundaries.</description><identifier>ISSN: 0937-9827</identifier><identifier>EISSN: 1437-1596</identifier><identifier>DOI: 10.1007/s00414-019-02043-y</identifier><identifier>PMID: 30877383</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Dimensional analysis ; Forensic Medicine ; Haplotypes ; Legal Medicine ; Life Sciences & Biomedicine ; Loci ; Medical Law ; Medicine ; Medicine & Public Health ; Medicine, Legal ; Phylogenetics ; Population ; Population Data ; Population genetics ; Populations ; Science & Technology ; Y chromosomes</subject><ispartof>International journal of legal medicine, 2020-03, Vol.134 (2), p.513-516</ispartof><rights>Springer-Verlag GmbH Germany, part of Springer Nature 2019</rights><rights>International Journal of Legal Medicine is a copyright of Springer, (2019). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>true</woscitedreferencessubscribed><woscitedreferencescount>13</woscitedreferencescount><woscitedreferencesoriginalsourcerecordid>wos000516579000015</woscitedreferencesoriginalsourcerecordid><citedby>FETCH-LOGICAL-c375t-33da7734a608c73e2405335f839f435ed2ae7dd9fa8c6bcc59b7de313c3a28a3</citedby><cites>FETCH-LOGICAL-c375t-33da7734a608c73e2405335f839f435ed2ae7dd9fa8c6bcc59b7de313c3a28a3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00414-019-02043-y$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00414-019-02043-y$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>315,781,785,27929,27930,28253,41493,42562,51324</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30877383$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Song, Feng</creatorcontrib><creatorcontrib>Xie, Mingkun</creatorcontrib><creatorcontrib>Xie, Bowen</creatorcontrib><creatorcontrib>Wang, Shuangshuang</creatorcontrib><creatorcontrib>Liao, Miao</creatorcontrib><creatorcontrib>Luo, Haibo</creatorcontrib><title>Genetic diversity and phylogenetic analysis of 29 Y-STR loci in the Tibetan population from Sichuan Province, Southwest China</title><title>International journal of legal medicine</title><addtitle>Int J Legal Med</addtitle><addtitle>INT J LEGAL MED</addtitle><addtitle>Int J Legal Med</addtitle><description>Y-Chromosomal short tandem repeat polymorphisms (Y-STRs) are widely applied in human forensic cases and population genetic studies. There is a lack of information about the Sichuan Tibetan population in the Y-STR Haplotype Reference Database (YHRD,
https://yhrd.org
, release 59). In this study, 502 unrelated male individuals residing in the Sichuan Province were recruited and genotyped at 29 Y-STR loci. A total of 479 haplotypes were observed, 460 (96.03%) of which were unique. The haplotype diversity (HD) and discrimination capacity (DC) for the Sichuan Tibetan population were 0.9998 and 0.9542, respectively. To reveal the genetic diversities and relationships between the Chinese Sichuan Tibetan and 29 other previously reported populations, forensic parameter analysis, multi-dimensional scaling, and phylogenetic reconstruction were performed. The results showed that the Sichuan Tibetan population was relatively isolated from other populations, suggesting that genetic proximity is in line with geographical boundaries.</description><subject>Dimensional analysis</subject><subject>Forensic Medicine</subject><subject>Haplotypes</subject><subject>Legal Medicine</subject><subject>Life Sciences & Biomedicine</subject><subject>Loci</subject><subject>Medical Law</subject><subject>Medicine</subject><subject>Medicine & Public Health</subject><subject>Medicine, Legal</subject><subject>Phylogenetics</subject><subject>Population</subject><subject>Population Data</subject><subject>Population genetics</subject><subject>Populations</subject><subject>Science & Technology</subject><subject>Y chromosomes</subject><issn>0937-9827</issn><issn>1437-1596</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>AOWDO</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><recordid>eNqNkcGP1CAUxonRuOPqP-DBkHgx0eqjlAJH0-hqsonGmYunhlK6ZdOBEehuevB_l52Oa-LBeOIFft97H-9D6DmBtwSAv4sAFakKILKAEipaLA_QhlSUF4TJ-iHagMy1FCU_Q09ivAYgvObsMTqjIDingm7QzwvjTLIa9_bGhGjTgpXr8WFcJn91elJOTUu0EfsBlxJ_L7a7b3jy2mLrcBoN3tnOJOXwwR_mSSXrHR6C3-Ot1eOc778Gf2OdNm_w1s9pvDUx4Wa0Tj1FjwY1RfPsdJ6j3ccPu-ZTcfnl4nPz_rLQlLNUUNqr7LdSNQjNqSkrYJSyQVA5VJSZvlSG970clNB1pzWTHe8NJVRTVQpFz9Grte0h-B9znt7ubdRmmpQzfo5tSSQltZCCZfTlX-i1n0NewJEiHIgoSabKldLBxxjM0B6C3auwtATau2zaNZs2Z9Mes2mXLHpxaj13e9PfS36HkYHXK3BrOj9EbU3e2T0GAIzUjMtcALlzKv6fbmw65tL42aUspas0ZtxdmfDnk__w_wvam7tk</recordid><startdate>20200301</startdate><enddate>20200301</enddate><creator>Song, Feng</creator><creator>Xie, Mingkun</creator><creator>Xie, Bowen</creator><creator>Wang, Shuangshuang</creator><creator>Liao, Miao</creator><creator>Luo, Haibo</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature</general><general>Springer Nature B.V</general><scope>AOWDO</scope><scope>BLEPL</scope><scope>DTL</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>0-V</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AM</scope><scope>8AO</scope><scope>8FE</scope><scope>8FG</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ALSLI</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BGRYB</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>HCIFZ</scope><scope>K7.</scope><scope>K9.</scope><scope>L6V</scope><scope>M0O</scope><scope>M0S</scope><scope>M1P</scope><scope>M7S</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PTHSS</scope><scope>Q9U</scope><scope>7X8</scope></search><sort><creationdate>20200301</creationdate><title>Genetic diversity and phylogenetic analysis of 29 Y-STR loci in the Tibetan population from Sichuan Province, Southwest China</title><author>Song, Feng ; Xie, Mingkun ; Xie, Bowen ; Wang, Shuangshuang ; Liao, Miao ; Luo, Haibo</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c375t-33da7734a608c73e2405335f839f435ed2ae7dd9fa8c6bcc59b7de313c3a28a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Dimensional analysis</topic><topic>Forensic Medicine</topic><topic>Haplotypes</topic><topic>Legal Medicine</topic><topic>Life Sciences & Biomedicine</topic><topic>Loci</topic><topic>Medical Law</topic><topic>Medicine</topic><topic>Medicine & Public Health</topic><topic>Medicine, Legal</topic><topic>Phylogenetics</topic><topic>Population</topic><topic>Population Data</topic><topic>Population genetics</topic><topic>Populations</topic><topic>Science & Technology</topic><topic>Y chromosomes</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Song, Feng</creatorcontrib><creatorcontrib>Xie, Mingkun</creatorcontrib><creatorcontrib>Xie, Bowen</creatorcontrib><creatorcontrib>Wang, Shuangshuang</creatorcontrib><creatorcontrib>Liao, Miao</creatorcontrib><creatorcontrib>Luo, Haibo</creatorcontrib><collection>Web of Science - Science Citation Index Expanded - 2020</collection><collection>Web of Science Core Collection</collection><collection>Science Citation Index Expanded</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Social Sciences Premium Collection</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Criminal Justice Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Materials Science & Engineering Collection</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>Social Science Premium Collection</collection><collection>ProQuest Central</collection><collection>Technology Collection</collection><collection>Criminology Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Criminal Justice (Alumni)</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Engineering Collection</collection><collection>Criminal Justice Database</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Engineering Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Engineering Collection</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of legal medicine</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Song, Feng</au><au>Xie, Mingkun</au><au>Xie, Bowen</au><au>Wang, Shuangshuang</au><au>Liao, Miao</au><au>Luo, Haibo</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic diversity and phylogenetic analysis of 29 Y-STR loci in the Tibetan population from Sichuan Province, Southwest China</atitle><jtitle>International journal of legal medicine</jtitle><stitle>Int J Legal Med</stitle><stitle>INT J LEGAL MED</stitle><addtitle>Int J Legal Med</addtitle><date>2020-03-01</date><risdate>2020</risdate><volume>134</volume><issue>2</issue><spage>513</spage><epage>516</epage><pages>513-516</pages><issn>0937-9827</issn><eissn>1437-1596</eissn><abstract>Y-Chromosomal short tandem repeat polymorphisms (Y-STRs) are widely applied in human forensic cases and population genetic studies. There is a lack of information about the Sichuan Tibetan population in the Y-STR Haplotype Reference Database (YHRD,
https://yhrd.org
, release 59). In this study, 502 unrelated male individuals residing in the Sichuan Province were recruited and genotyped at 29 Y-STR loci. A total of 479 haplotypes were observed, 460 (96.03%) of which were unique. The haplotype diversity (HD) and discrimination capacity (DC) for the Sichuan Tibetan population were 0.9998 and 0.9542, respectively. To reveal the genetic diversities and relationships between the Chinese Sichuan Tibetan and 29 other previously reported populations, forensic parameter analysis, multi-dimensional scaling, and phylogenetic reconstruction were performed. The results showed that the Sichuan Tibetan population was relatively isolated from other populations, suggesting that genetic proximity is in line with geographical boundaries.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>30877383</pmid><doi>10.1007/s00414-019-02043-y</doi><tpages>4</tpages></addata></record> |
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| subjects | Dimensional analysis Forensic Medicine Haplotypes Legal Medicine Life Sciences & Biomedicine Loci Medical Law Medicine Medicine & Public Health Medicine, Legal Phylogenetics Population Population Data Population genetics Populations Science & Technology Y chromosomes |
| title | Genetic diversity and phylogenetic analysis of 29 Y-STR loci in the Tibetan population from Sichuan Province, Southwest China |
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