Constructing a high-density linkage map for Gossypium hirsutum × Gossypium barbadense and identifying QTLs for lint percentage
To introgress the good fiber quality and yield from Gossypium barbadense into a commercial Upland cotton variety, a high‐density simple sequence repeat （SSR） genetic linkage map was developed from a BC1F1 population of Gossypium hirsutum × Gossypium barbadense. The map com-prised 2,292 loci and cove...
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| Veröffentlicht in: | Journal of integrative plant biology 2015-05, Vol.57 (5), p.450-467 |
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| creator | Shi, Yuzhen Li, Wentan Li, Aiguo Ge, Ruihua Zhang, Baocai Li, Junzhi Liu, Guangping Li, Junwen Liu, Aiying Shang, Haihong Gong, Juwu Gong, Wankui Yang, Zemao Tang, Feiyü Liu, Zhi Zhu, Weiping Jiang, Jianxiong Yu, Xiaonan Wang, Tao Wang, Wei Chen, Tingting Wang, Kunbo Zhang, Zhengsheng Yuan, Youlu |
| description | To introgress the good fiber quality and yield from Gossypium barbadense into a commercial Upland cotton variety, a high‐density simple sequence repeat （SSR） genetic linkage map was developed from a BC1F1 population of Gossypium hirsutum × Gossypium barbadense. The map com-prised 2,292 loci and covered 5115.16 centiMorgan （cM） of the cotton AD genome, with an average marker interval of 2.23 cM. Of the marker order for 1,577 common loci on this new map, 90.36% agrees well with the marker order on the D genome sequence genetic map. Compared with five pub-lished high‐density SSR genetic maps, 53.14% of marker loci were newly discovered in this map. Twenty‐six quantitative trait loci （QTLs） for lint percentage （LP） were identified on nine chromosomes. Nine stable or common QTLs could be used for marker‐assisted selection. Fifty percent of the QTLs were from G. barbadense and increased LP by 1.07%–2.41%. These results indicated that the map could be used for screening chromosome substitution segments from G. barbadense in the Upland cotton background, identifying QTLs or genes from G. barbadense, and further developing the gene pyramiding effect for improving fiber yield and quality. |
| doi_str_mv | 10.1111/jipb.12288 |
| format | Article |
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The map com-prised 2,292 loci and covered 5115.16 centiMorgan （cM） of the cotton AD genome, with an average marker interval of 2.23 cM. Of the marker order for 1,577 common loci on this new map, 90.36% agrees well with the marker order on the D genome sequence genetic map. Compared with five pub-lished high‐density SSR genetic maps, 53.14% of marker loci were newly discovered in this map. Twenty‐six quantitative trait loci （QTLs） for lint percentage （LP） were identified on nine chromosomes. Nine stable or common QTLs could be used for marker‐assisted selection. Fifty percent of the QTLs were from G. barbadense and increased LP by 1.07%–2.41%. These results indicated that the map could be used for screening chromosome substitution segments from G. barbadense in the Upland cotton background, identifying QTLs or genes from G. barbadense, and further developing the gene pyramiding effect for improving fiber yield and quality.</description><identifier>ISSN: 1672-9072</identifier><identifier>EISSN: 1744-7909</identifier><identifier>DOI: 10.1111/jipb.12288</identifier><identifier>PMID: 25263268</identifier><language>eng</language><publisher>China (Republic : 1949- ): Blackwell Publishing Ltd</publisher><subject>Alleles ; Chromosome Mapping ; Chromosomes, Plant - genetics ; Cotton (Gossypium spp.) ; Crosses, Genetic ; Gene Frequency - genetics ; Genetic Linkage ; genetic linkage map ; Genetic Loci ; Genetic Markers ; Genome, Plant ; Genotype ; Gossypium - genetics ; Gossypium barbadense ; Heterozygote ; lint percentage ; Microsatellite Repeats - genetics ; Polymorphism, Genetic ; Polyploidy ; QTL定位 ; Quantitative Trait Loci - genetics ; simple sequence repeat ; Textiles ; 标记位点 ; 海岛棉 ; 衣分 ; 遗传连锁图谱 ; 鉴定 ; 陆地棉 ; 高密度</subject><ispartof>Journal of integrative plant biology, 2015-05, Vol.57 (5), p.450-467</ispartof><rights>2014 Institute of Botany, Chinese Academy of Sciences</rights><rights>2014 Institute of Botany, Chinese Academy of Sciences.</rights><rights>Copyright © Wanfang Data Co. Ltd. All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3398-bfb05ea7cb7e87576b9dcc8f8b6e17c816ca610e2c244a34e55be2d6bcddcabf3</citedby><cites>FETCH-LOGICAL-c3398-bfb05ea7cb7e87576b9dcc8f8b6e17c816ca610e2c244a34e55be2d6bcddcabf3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Uhttp://image.cqvip.com/vip1000/qk/94176A/94176A.jpg</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fjipb.12288$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fjipb.12288$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25263268$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Shi, Yuzhen</creatorcontrib><creatorcontrib>Li, Wentan</creatorcontrib><creatorcontrib>Li, Aiguo</creatorcontrib><creatorcontrib>Ge, Ruihua</creatorcontrib><creatorcontrib>Zhang, Baocai</creatorcontrib><creatorcontrib>Li, Junzhi</creatorcontrib><creatorcontrib>Liu, Guangping</creatorcontrib><creatorcontrib>Li, Junwen</creatorcontrib><creatorcontrib>Liu, Aiying</creatorcontrib><creatorcontrib>Shang, Haihong</creatorcontrib><creatorcontrib>Gong, Juwu</creatorcontrib><creatorcontrib>Gong, Wankui</creatorcontrib><creatorcontrib>Yang, Zemao</creatorcontrib><creatorcontrib>Tang, Feiyü</creatorcontrib><creatorcontrib>Liu, Zhi</creatorcontrib><creatorcontrib>Zhu, Weiping</creatorcontrib><creatorcontrib>Jiang, Jianxiong</creatorcontrib><creatorcontrib>Yu, Xiaonan</creatorcontrib><creatorcontrib>Wang, Tao</creatorcontrib><creatorcontrib>Wang, Wei</creatorcontrib><creatorcontrib>Chen, Tingting</creatorcontrib><creatorcontrib>Wang, Kunbo</creatorcontrib><creatorcontrib>Zhang, Zhengsheng</creatorcontrib><creatorcontrib>Yuan, Youlu</creatorcontrib><title>Constructing a high-density linkage map for Gossypium hirsutum × Gossypium barbadense and identifying QTLs for lint percentage</title><title>Journal of integrative plant biology</title><addtitle>Journal of Integrative Plant Biology</addtitle><description>To introgress the good fiber quality and yield from Gossypium barbadense into a commercial Upland cotton variety, a high‐density simple sequence repeat （SSR） genetic linkage map was developed from a BC1F1 population of Gossypium hirsutum × Gossypium barbadense. The map com-prised 2,292 loci and covered 5115.16 centiMorgan （cM） of the cotton AD genome, with an average marker interval of 2.23 cM. Of the marker order for 1,577 common loci on this new map, 90.36% agrees well with the marker order on the D genome sequence genetic map. Compared with five pub-lished high‐density SSR genetic maps, 53.14% of marker loci were newly discovered in this map. Twenty‐six quantitative trait loci （QTLs） for lint percentage （LP） were identified on nine chromosomes. Nine stable or common QTLs could be used for marker‐assisted selection. Fifty percent of the QTLs were from G. barbadense and increased LP by 1.07%–2.41%. These results indicated that the map could be used for screening chromosome substitution segments from G. barbadense in the Upland cotton background, identifying QTLs or genes from G. barbadense, and further developing the gene pyramiding effect for improving fiber yield and quality.</description><subject>Alleles</subject><subject>Chromosome Mapping</subject><subject>Chromosomes, Plant - genetics</subject><subject>Cotton (Gossypium spp.)</subject><subject>Crosses, Genetic</subject><subject>Gene Frequency - genetics</subject><subject>Genetic Linkage</subject><subject>genetic linkage map</subject><subject>Genetic Loci</subject><subject>Genetic Markers</subject><subject>Genome, Plant</subject><subject>Genotype</subject><subject>Gossypium - genetics</subject><subject>Gossypium barbadense</subject><subject>Heterozygote</subject><subject>lint percentage</subject><subject>Microsatellite Repeats - genetics</subject><subject>Polymorphism, Genetic</subject><subject>Polyploidy</subject><subject>QTL定位</subject><subject>Quantitative Trait Loci - genetics</subject><subject>simple sequence repeat</subject><subject>Textiles</subject><subject>标记位点</subject><subject>海岛棉</subject><subject>衣分</subject><subject>遗传连锁图谱</subject><subject>鉴定</subject><subject>陆地棉</subject><subject>高密度</subject><issn>1672-9072</issn><issn>1744-7909</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kc1u1DAURi0EoqWw4QFQhISEkFJsJ_7JsgwwFEaloKIuLdtxMp4mTmonasOGx-CBeDGcznTECm98ZZ97fOUPgOcIHqO43m5sr44Rxpw_AIeI5XnKClg8jDVlOC0gwwfgSQgbCDMOKX4MDjDBNMOUH4Jfi86FwY96sK5OZLK29TotjQt2mJLGuitZm6SVfVJ1Pll2IUy9HduI-TAOsfjz-59TJb2Sc7NJpCsTG8vBVtNs_naxCneO6ByS3ngd76L7KXhUySaYZ7v9CPz4-OFi8SldfV2eLk5Wqc6ygqeqUpAYybRihjPCqCpKrXnFFTWIaY6olhRBgzXOc5nlhhBlcEmVLkstVZUdgVdb7410lXS12HSjd_FF8fPmVmGICCQQosi93nK9765HEwbR2qBN00hnujGI-KWEMw7ZjL7ZotrHH_CmEr23rfSTQFDMwYg5GHEXTIRf7Lyjak25R--TiADaDWgbM_1HJT6fnr-7l6bbHhsGc7vvkf5KUJYxIi7PluL9grHLs_Mv4nvkX-4mXneuvo657HsoJTDPiwJnfwEAQrbO</recordid><startdate>201505</startdate><enddate>201505</enddate><creator>Shi, Yuzhen</creator><creator>Li, Wentan</creator><creator>Li, Aiguo</creator><creator>Ge, Ruihua</creator><creator>Zhang, Baocai</creator><creator>Li, Junzhi</creator><creator>Liu, Guangping</creator><creator>Li, Junwen</creator><creator>Liu, Aiying</creator><creator>Shang, Haihong</creator><creator>Gong, Juwu</creator><creator>Gong, Wankui</creator><creator>Yang, Zemao</creator><creator>Tang, Feiyü</creator><creator>Liu, Zhi</creator><creator>Zhu, Weiping</creator><creator>Jiang, Jianxiong</creator><creator>Yu, Xiaonan</creator><creator>Wang, Tao</creator><creator>Wang, Wei</creator><creator>Chen, Tingting</creator><creator>Wang, Kunbo</creator><creator>Zhang, Zhengsheng</creator><creator>Yuan, Youlu</creator><general>Blackwell Publishing Ltd</general><general>State Key Laboratory of Cotton Biology, Key Laboratory of Biological and Genetic Breeding of Cotton, the Ministry of Agriculture, Institute of Cotton Research, the Chinese Academy of Agricultural Sciences, Anyang 455000, China%Agricultural Col ege of Jiangxi Agricultural University, Nanchang 330045, China%College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha 410128, China%College of Agronomy, Hunan Agricultural University, Changsha 410128, China%Agricultural Col ege of Southwest University, Chongqing 400716, China</general><scope>2RA</scope><scope>92L</scope><scope>CQIGP</scope><scope>W94</scope><scope>WU4</scope><scope>~WA</scope><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>2B.</scope><scope>4A8</scope><scope>92I</scope><scope>93N</scope><scope>PSX</scope><scope>TCJ</scope></search><sort><creationdate>201505</creationdate><title>Constructing a high-density linkage map for Gossypium hirsutum × Gossypium barbadense and identifying QTLs for lint percentage</title><author>Shi, Yuzhen ; Li, Wentan ; Li, Aiguo ; Ge, Ruihua ; Zhang, Baocai ; Li, Junzhi ; Liu, Guangping ; Li, Junwen ; Liu, Aiying ; Shang, Haihong ; Gong, Juwu ; Gong, Wankui ; Yang, Zemao ; Tang, Feiyü ; Liu, Zhi ; Zhu, Weiping ; Jiang, Jianxiong ; Yu, Xiaonan ; Wang, Tao ; Wang, Wei ; Chen, Tingting ; Wang, Kunbo ; Zhang, Zhengsheng ; Yuan, Youlu</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3398-bfb05ea7cb7e87576b9dcc8f8b6e17c816ca610e2c244a34e55be2d6bcddcabf3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Alleles</topic><topic>Chromosome Mapping</topic><topic>Chromosomes, Plant - genetics</topic><topic>Cotton (Gossypium spp.)</topic><topic>Crosses, Genetic</topic><topic>Gene Frequency - genetics</topic><topic>Genetic Linkage</topic><topic>genetic linkage map</topic><topic>Genetic Loci</topic><topic>Genetic Markers</topic><topic>Genome, Plant</topic><topic>Genotype</topic><topic>Gossypium - genetics</topic><topic>Gossypium barbadense</topic><topic>Heterozygote</topic><topic>lint percentage</topic><topic>Microsatellite Repeats - genetics</topic><topic>Polymorphism, Genetic</topic><topic>Polyploidy</topic><topic>QTL定位</topic><topic>Quantitative Trait Loci - genetics</topic><topic>simple sequence repeat</topic><topic>Textiles</topic><topic>标记位点</topic><topic>海岛棉</topic><topic>衣分</topic><topic>遗传连锁图谱</topic><topic>鉴定</topic><topic>陆地棉</topic><topic>高密度</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Shi, Yuzhen</creatorcontrib><creatorcontrib>Li, Wentan</creatorcontrib><creatorcontrib>Li, Aiguo</creatorcontrib><creatorcontrib>Ge, Ruihua</creatorcontrib><creatorcontrib>Zhang, Baocai</creatorcontrib><creatorcontrib>Li, Junzhi</creatorcontrib><creatorcontrib>Liu, Guangping</creatorcontrib><creatorcontrib>Li, Junwen</creatorcontrib><creatorcontrib>Liu, Aiying</creatorcontrib><creatorcontrib>Shang, Haihong</creatorcontrib><creatorcontrib>Gong, Juwu</creatorcontrib><creatorcontrib>Gong, Wankui</creatorcontrib><creatorcontrib>Yang, Zemao</creatorcontrib><creatorcontrib>Tang, Feiyü</creatorcontrib><creatorcontrib>Liu, Zhi</creatorcontrib><creatorcontrib>Zhu, Weiping</creatorcontrib><creatorcontrib>Jiang, Jianxiong</creatorcontrib><creatorcontrib>Yu, Xiaonan</creatorcontrib><creatorcontrib>Wang, Tao</creatorcontrib><creatorcontrib>Wang, Wei</creatorcontrib><creatorcontrib>Chen, Tingting</creatorcontrib><creatorcontrib>Wang, Kunbo</creatorcontrib><creatorcontrib>Zhang, Zhengsheng</creatorcontrib><creatorcontrib>Yuan, Youlu</creatorcontrib><collection>中文科技期刊数据库</collection><collection>中文科技期刊数据库-CALIS站点</collection><collection>中文科技期刊数据库-7.0平台</collection><collection>中文科技期刊数据库-自然科学</collection><collection>中文科技期刊数据库-自然科学-生物科学</collection><collection>中文科技期刊数据库- 镜像站点</collection><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Wanfang Data Journals - Hong Kong</collection><collection>WANFANG Data Centre</collection><collection>Wanfang Data Journals</collection><collection>万方数据期刊 - 香港版</collection><collection>China Online Journals (COJ)</collection><collection>China Online Journals (COJ)</collection><jtitle>Journal of integrative plant biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Shi, Yuzhen</au><au>Li, Wentan</au><au>Li, Aiguo</au><au>Ge, Ruihua</au><au>Zhang, Baocai</au><au>Li, Junzhi</au><au>Liu, Guangping</au><au>Li, Junwen</au><au>Liu, Aiying</au><au>Shang, Haihong</au><au>Gong, Juwu</au><au>Gong, Wankui</au><au>Yang, Zemao</au><au>Tang, Feiyü</au><au>Liu, Zhi</au><au>Zhu, Weiping</au><au>Jiang, Jianxiong</au><au>Yu, Xiaonan</au><au>Wang, Tao</au><au>Wang, Wei</au><au>Chen, Tingting</au><au>Wang, Kunbo</au><au>Zhang, Zhengsheng</au><au>Yuan, Youlu</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Constructing a high-density linkage map for Gossypium hirsutum × Gossypium barbadense and identifying QTLs for lint percentage</atitle><jtitle>Journal of integrative plant biology</jtitle><addtitle>Journal of Integrative Plant Biology</addtitle><date>2015-05</date><risdate>2015</risdate><volume>57</volume><issue>5</issue><spage>450</spage><epage>467</epage><pages>450-467</pages><issn>1672-9072</issn><eissn>1744-7909</eissn><abstract>To introgress the good fiber quality and yield from Gossypium barbadense into a commercial Upland cotton variety, a high‐density simple sequence repeat （SSR） genetic linkage map was developed from a BC1F1 population of Gossypium hirsutum × Gossypium barbadense. The map com-prised 2,292 loci and covered 5115.16 centiMorgan （cM） of the cotton AD genome, with an average marker interval of 2.23 cM. Of the marker order for 1,577 common loci on this new map, 90.36% agrees well with the marker order on the D genome sequence genetic map. Compared with five pub-lished high‐density SSR genetic maps, 53.14% of marker loci were newly discovered in this map. Twenty‐six quantitative trait loci （QTLs） for lint percentage （LP） were identified on nine chromosomes. Nine stable or common QTLs could be used for marker‐assisted selection. Fifty percent of the QTLs were from G. barbadense and increased LP by 1.07%–2.41%. These results indicated that the map could be used for screening chromosome substitution segments from G. barbadense in the Upland cotton background, identifying QTLs or genes from G. barbadense, and further developing the gene pyramiding effect for improving fiber yield and quality.</abstract><cop>China (Republic : 1949- )</cop><pub>Blackwell Publishing Ltd</pub><pmid>25263268</pmid><doi>10.1111/jipb.12288</doi><tpages>18</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1672-9072 |
| ispartof | Journal of integrative plant biology, 2015-05, Vol.57 (5), p.450-467 |
| issn | 1672-9072 1744-7909 |
| language | eng |
| recordid | cdi_wanfang_journals_zwxb201505001 |
| source | MEDLINE; Wiley Online Library Journals Frontfile Complete; Alma/SFX Local Collection |
| subjects | Alleles Chromosome Mapping Chromosomes, Plant - genetics Cotton (Gossypium spp.) Crosses, Genetic Gene Frequency - genetics Genetic Linkage genetic linkage map Genetic Loci Genetic Markers Genome, Plant Genotype Gossypium - genetics Gossypium barbadense Heterozygote lint percentage Microsatellite Repeats - genetics Polymorphism, Genetic Polyploidy QTL定位 Quantitative Trait Loci - genetics simple sequence repeat Textiles 标记位点 海岛棉 衣分 遗传连锁图谱 鉴定 陆地棉 高密度 |
| title | Constructing a high-density linkage map for Gossypium hirsutum × Gossypium barbadense and identifying QTLs for lint percentage |
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