Novel Natural Allelic Variations at the Rht-1 Loci in Wheat
Plant height is an important agronomic trait. Dramatic increase in wheat yield during the “green revolution” is mainly due to the widespread utilization of the Reduced height (Rht)‐1 gene. We analyzed the natural allelic variations of three homoeologous loci Rht‐A1, Rht‐B1, and Rht‐D1 in Chinese whe...
Gespeichert in:
| Veröffentlicht in: | Journal of integrative plant biology 2013-11, Vol.55 (11), p.1026-1037 |
|---|---|
| Hauptverfasser: | , , , , , , , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 1037 |
|---|---|
| container_issue | 11 |
| container_start_page | 1026 |
| container_title | Journal of integrative plant biology |
| container_volume | 55 |
| creator | Li, Aixia Yang, Wenlong Lou, Xueyuan Liu, Dongcheng Sun, Jiazhu Guo, Xiaoli Wang, Jing Li, Yiwen Zhan, Kehui Ling, Hong-Qing Zhang, Aimin |
| description | Plant height is an important agronomic trait. Dramatic increase in wheat yield during the “green revolution” is mainly due to the widespread utilization of the Reduced height (Rht)‐1 gene. We analyzed the natural allelic variations of three homoeologous loci Rht‐A1, Rht‐B1, and Rht‐D1 in Chinese wheat (Triticum aestivum L.) micro‐core collections and the Rht‐B1/D1 genotypes in over 1,500 bred cultivars and germplasms using a modified EcoTILLING. We identified six new Rht‐A1 allelic variations (Rht‐A1b–g), eight new Rht‐B1 allelic variations (Rht‐B1h–o), and six new Rht‐D1 allelic variations (Rht‐D1e–j). These allelic variations contain single nucleotide polymorphisms (SNPs) or small insertions and deletions in the coding or uncoding regions, involving two frame‐shift mutations and 15 missenses. Of which, Rht‐D1e and Rht‐D1h resulted in the loss of interactions of GID1‐DELLA‐GID2, Rht‐B1i could increase plant height. We found that the Rht‐B1h contains the same SNPs and 197 bp fragment insertion as reported in Rht‐B1c. Further detection of Rht‐B1h in Tibet wheat germplasms and wheat relatives indicated that Rht‐B1c may originate from Rht‐B1h. These results suggest rich genetic diversity at the Rht‐1 loci and provide new resources for wheat breeding. |
| doi_str_mv | 10.1111/jipb.12103 |
| format | Article |
| fullrecord | <record><control><sourceid>wanfang_jour_proqu</sourceid><recordid>TN_cdi_wanfang_journals_zwxb201311004</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><wanfj_id>zwxb201311004</wanfj_id><sourcerecordid>zwxb201311004</sourcerecordid><originalsourceid>FETCH-LOGICAL-c4993-d585f0bc5f539909ddaf743fc7e6e5e946c832c70cc8c93c7a16c8dad9f95f653</originalsourceid><addsrcrecordid>eNp9kElPwzAQhS0EYr_wA5AvSAgp4CWOY3GCsqsqCLEcLdexqYubFDth-_UYWjgylxmNvnlv9ADYwmgfpzoYu-lwHxOM6AJYxTzPMy6QWExzwUkmECcrYC3GMUK0RAVZBiuECkGwKFfB4aB5NR4OVNsF5eGR98Y7DR9UcKp1TR2hamE7MvB21GYY9hvtoKvh48iodgMsWeWj2Zz3dXB_dnrXu8j61-eXvaN-pnMhaFaxklk01MyyZItEVSnLc2o1N4VhRuSFLinRHGldakE1VzhtKlUJK5gtGF0HOzPdN1VbVT_JcdOFOjnKz7f3IUGYYoxQnrjdGTcNzUtnYisnLmrjvapN00WJ81wQXpSCJnRvhurQxBiMldPgJip8SIzkd6jyO1T5E2qCt-e63XBiqj_0N8UE4PmDzpuPf6Tk1eXN8a9oNrtxsTXvfzcqPMuCU87k4-BccnF1cXfCzmSPfgFYoI5g</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1449276893</pqid></control><display><type>article</type><title>Novel Natural Allelic Variations at the Rht-1 Loci in Wheat</title><source>MEDLINE</source><source>Wiley Online Library All Journals</source><source>Alma/SFX Local Collection</source><creator>Li, Aixia ; Yang, Wenlong ; Lou, Xueyuan ; Liu, Dongcheng ; Sun, Jiazhu ; Guo, Xiaoli ; Wang, Jing ; Li, Yiwen ; Zhan, Kehui ; Ling, Hong-Qing ; Zhang, Aimin</creator><creatorcontrib>Li, Aixia ; Yang, Wenlong ; Lou, Xueyuan ; Liu, Dongcheng ; Sun, Jiazhu ; Guo, Xiaoli ; Wang, Jing ; Li, Yiwen ; Zhan, Kehui ; Ling, Hong-Qing ; Zhang, Aimin</creatorcontrib><description>Plant height is an important agronomic trait. Dramatic increase in wheat yield during the “green revolution” is mainly due to the widespread utilization of the Reduced height (Rht)‐1 gene. We analyzed the natural allelic variations of three homoeologous loci Rht‐A1, Rht‐B1, and Rht‐D1 in Chinese wheat (Triticum aestivum L.) micro‐core collections and the Rht‐B1/D1 genotypes in over 1,500 bred cultivars and germplasms using a modified EcoTILLING. We identified six new Rht‐A1 allelic variations (Rht‐A1b–g), eight new Rht‐B1 allelic variations (Rht‐B1h–o), and six new Rht‐D1 allelic variations (Rht‐D1e–j). These allelic variations contain single nucleotide polymorphisms (SNPs) or small insertions and deletions in the coding or uncoding regions, involving two frame‐shift mutations and 15 missenses. Of which, Rht‐D1e and Rht‐D1h resulted in the loss of interactions of GID1‐DELLA‐GID2, Rht‐B1i could increase plant height. We found that the Rht‐B1h contains the same SNPs and 197 bp fragment insertion as reported in Rht‐B1c. Further detection of Rht‐B1h in Tibet wheat germplasms and wheat relatives indicated that Rht‐B1c may originate from Rht‐B1h. These results suggest rich genetic diversity at the Rht‐1 loci and provide new resources for wheat breeding.</description><identifier>ISSN: 1672-9072</identifier><identifier>EISSN: 1744-7909</identifier><identifier>DOI: 10.1111/jipb.12103</identifier><identifier>PMID: 23992198</identifier><language>eng</language><publisher>China (Republic : 1949- ): Blackwell Publishing Ltd</publisher><subject>Alleles ; Allelic variation ; Base Sequence ; China ; EcoTILLING ; Genetic Association Studies ; Genetic Loci - genetics ; Genetic Variation ; Genotype ; Gibberellins - pharmacology ; Molecular Sequence Data ; Mutation - genetics ; Plant Proteins - genetics ; Rht-1 ; Seeds - drug effects ; Seeds - genetics ; Triticum - anatomy & histology ; Triticum - drug effects ; Triticum - genetics ; wheat ; Yeast three hybrid</subject><ispartof>Journal of integrative plant biology, 2013-11, Vol.55 (11), p.1026-1037</ispartof><rights>2013 Institute of Botany, Chinese Academy of Sciences</rights><rights>2013 Institute of Botany, Chinese Academy of Sciences.</rights><rights>Copyright © Wanfang Data Co. Ltd. All Rights Reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4993-d585f0bc5f539909ddaf743fc7e6e5e946c832c70cc8c93c7a16c8dad9f95f653</citedby><cites>FETCH-LOGICAL-c4993-d585f0bc5f539909ddaf743fc7e6e5e946c832c70cc8c93c7a16c8dad9f95f653</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Uhttp://www.wanfangdata.com.cn/images/PeriodicalImages/zwxb/zwxb.jpg</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fjipb.12103$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fjipb.12103$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1416,27923,27924,45573,45574</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23992198$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Li, Aixia</creatorcontrib><creatorcontrib>Yang, Wenlong</creatorcontrib><creatorcontrib>Lou, Xueyuan</creatorcontrib><creatorcontrib>Liu, Dongcheng</creatorcontrib><creatorcontrib>Sun, Jiazhu</creatorcontrib><creatorcontrib>Guo, Xiaoli</creatorcontrib><creatorcontrib>Wang, Jing</creatorcontrib><creatorcontrib>Li, Yiwen</creatorcontrib><creatorcontrib>Zhan, Kehui</creatorcontrib><creatorcontrib>Ling, Hong-Qing</creatorcontrib><creatorcontrib>Zhang, Aimin</creatorcontrib><title>Novel Natural Allelic Variations at the Rht-1 Loci in Wheat</title><title>Journal of integrative plant biology</title><addtitle>J. Integr. Plant Biol</addtitle><description>Plant height is an important agronomic trait. Dramatic increase in wheat yield during the “green revolution” is mainly due to the widespread utilization of the Reduced height (Rht)‐1 gene. We analyzed the natural allelic variations of three homoeologous loci Rht‐A1, Rht‐B1, and Rht‐D1 in Chinese wheat (Triticum aestivum L.) micro‐core collections and the Rht‐B1/D1 genotypes in over 1,500 bred cultivars and germplasms using a modified EcoTILLING. We identified six new Rht‐A1 allelic variations (Rht‐A1b–g), eight new Rht‐B1 allelic variations (Rht‐B1h–o), and six new Rht‐D1 allelic variations (Rht‐D1e–j). These allelic variations contain single nucleotide polymorphisms (SNPs) or small insertions and deletions in the coding or uncoding regions, involving two frame‐shift mutations and 15 missenses. Of which, Rht‐D1e and Rht‐D1h resulted in the loss of interactions of GID1‐DELLA‐GID2, Rht‐B1i could increase plant height. We found that the Rht‐B1h contains the same SNPs and 197 bp fragment insertion as reported in Rht‐B1c. Further detection of Rht‐B1h in Tibet wheat germplasms and wheat relatives indicated that Rht‐B1c may originate from Rht‐B1h. These results suggest rich genetic diversity at the Rht‐1 loci and provide new resources for wheat breeding.</description><subject>Alleles</subject><subject>Allelic variation</subject><subject>Base Sequence</subject><subject>China</subject><subject>EcoTILLING</subject><subject>Genetic Association Studies</subject><subject>Genetic Loci - genetics</subject><subject>Genetic Variation</subject><subject>Genotype</subject><subject>Gibberellins - pharmacology</subject><subject>Molecular Sequence Data</subject><subject>Mutation - genetics</subject><subject>Plant Proteins - genetics</subject><subject>Rht-1</subject><subject>Seeds - drug effects</subject><subject>Seeds - genetics</subject><subject>Triticum - anatomy & histology</subject><subject>Triticum - drug effects</subject><subject>Triticum - genetics</subject><subject>wheat</subject><subject>Yeast three hybrid</subject><issn>1672-9072</issn><issn>1744-7909</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kElPwzAQhS0EYr_wA5AvSAgp4CWOY3GCsqsqCLEcLdexqYubFDth-_UYWjgylxmNvnlv9ADYwmgfpzoYu-lwHxOM6AJYxTzPMy6QWExzwUkmECcrYC3GMUK0RAVZBiuECkGwKFfB4aB5NR4OVNsF5eGR98Y7DR9UcKp1TR2hamE7MvB21GYY9hvtoKvh48iodgMsWeWj2Zz3dXB_dnrXu8j61-eXvaN-pnMhaFaxklk01MyyZItEVSnLc2o1N4VhRuSFLinRHGldakE1VzhtKlUJK5gtGF0HOzPdN1VbVT_JcdOFOjnKz7f3IUGYYoxQnrjdGTcNzUtnYisnLmrjvapN00WJ81wQXpSCJnRvhurQxBiMldPgJip8SIzkd6jyO1T5E2qCt-e63XBiqj_0N8UE4PmDzpuPf6Tk1eXN8a9oNrtxsTXvfzcqPMuCU87k4-BccnF1cXfCzmSPfgFYoI5g</recordid><startdate>201311</startdate><enddate>201311</enddate><creator>Li, Aixia</creator><creator>Yang, Wenlong</creator><creator>Lou, Xueyuan</creator><creator>Liu, Dongcheng</creator><creator>Sun, Jiazhu</creator><creator>Guo, Xiaoli</creator><creator>Wang, Jing</creator><creator>Li, Yiwen</creator><creator>Zhan, Kehui</creator><creator>Ling, Hong-Qing</creator><creator>Zhang, Aimin</creator><general>Blackwell Publishing Ltd</general><general>The State Key Laboratory of Plant Cel and Chromosome Engineering, National Center for Plant Gene Research Beijing, Institute of Genetics and Developmental Biology, the Chinese Academy of Sciences, Beijing 100101, China%College of Biological Sciences, China Agricultural University, Beijing 100193, China%The Collaborative Innovation Center for Grain Crops in Henan, Henan Agricultural University, Zhengzhou 450002, China</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>2B.</scope><scope>4A8</scope><scope>92I</scope><scope>93N</scope><scope>PSX</scope><scope>TCJ</scope></search><sort><creationdate>201311</creationdate><title>Novel Natural Allelic Variations at the Rht-1 Loci in Wheat</title><author>Li, Aixia ; Yang, Wenlong ; Lou, Xueyuan ; Liu, Dongcheng ; Sun, Jiazhu ; Guo, Xiaoli ; Wang, Jing ; Li, Yiwen ; Zhan, Kehui ; Ling, Hong-Qing ; Zhang, Aimin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4993-d585f0bc5f539909ddaf743fc7e6e5e946c832c70cc8c93c7a16c8dad9f95f653</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Alleles</topic><topic>Allelic variation</topic><topic>Base Sequence</topic><topic>China</topic><topic>EcoTILLING</topic><topic>Genetic Association Studies</topic><topic>Genetic Loci - genetics</topic><topic>Genetic Variation</topic><topic>Genotype</topic><topic>Gibberellins - pharmacology</topic><topic>Molecular Sequence Data</topic><topic>Mutation - genetics</topic><topic>Plant Proteins - genetics</topic><topic>Rht-1</topic><topic>Seeds - drug effects</topic><topic>Seeds - genetics</topic><topic>Triticum - anatomy & histology</topic><topic>Triticum - drug effects</topic><topic>Triticum - genetics</topic><topic>wheat</topic><topic>Yeast three hybrid</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Li, Aixia</creatorcontrib><creatorcontrib>Yang, Wenlong</creatorcontrib><creatorcontrib>Lou, Xueyuan</creatorcontrib><creatorcontrib>Liu, Dongcheng</creatorcontrib><creatorcontrib>Sun, Jiazhu</creatorcontrib><creatorcontrib>Guo, Xiaoli</creatorcontrib><creatorcontrib>Wang, Jing</creatorcontrib><creatorcontrib>Li, Yiwen</creatorcontrib><creatorcontrib>Zhan, Kehui</creatorcontrib><creatorcontrib>Ling, Hong-Qing</creatorcontrib><creatorcontrib>Zhang, Aimin</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Wanfang Data Journals - Hong Kong</collection><collection>WANFANG Data Centre</collection><collection>Wanfang Data Journals</collection><collection>万方数据期刊 - 香港版</collection><collection>China Online Journals (COJ)</collection><collection>China Online Journals (COJ)</collection><jtitle>Journal of integrative plant biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Li, Aixia</au><au>Yang, Wenlong</au><au>Lou, Xueyuan</au><au>Liu, Dongcheng</au><au>Sun, Jiazhu</au><au>Guo, Xiaoli</au><au>Wang, Jing</au><au>Li, Yiwen</au><au>Zhan, Kehui</au><au>Ling, Hong-Qing</au><au>Zhang, Aimin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Novel Natural Allelic Variations at the Rht-1 Loci in Wheat</atitle><jtitle>Journal of integrative plant biology</jtitle><addtitle>J. Integr. Plant Biol</addtitle><date>2013-11</date><risdate>2013</risdate><volume>55</volume><issue>11</issue><spage>1026</spage><epage>1037</epage><pages>1026-1037</pages><issn>1672-9072</issn><eissn>1744-7909</eissn><abstract>Plant height is an important agronomic trait. Dramatic increase in wheat yield during the “green revolution” is mainly due to the widespread utilization of the Reduced height (Rht)‐1 gene. We analyzed the natural allelic variations of three homoeologous loci Rht‐A1, Rht‐B1, and Rht‐D1 in Chinese wheat (Triticum aestivum L.) micro‐core collections and the Rht‐B1/D1 genotypes in over 1,500 bred cultivars and germplasms using a modified EcoTILLING. We identified six new Rht‐A1 allelic variations (Rht‐A1b–g), eight new Rht‐B1 allelic variations (Rht‐B1h–o), and six new Rht‐D1 allelic variations (Rht‐D1e–j). These allelic variations contain single nucleotide polymorphisms (SNPs) or small insertions and deletions in the coding or uncoding regions, involving two frame‐shift mutations and 15 missenses. Of which, Rht‐D1e and Rht‐D1h resulted in the loss of interactions of GID1‐DELLA‐GID2, Rht‐B1i could increase plant height. We found that the Rht‐B1h contains the same SNPs and 197 bp fragment insertion as reported in Rht‐B1c. Further detection of Rht‐B1h in Tibet wheat germplasms and wheat relatives indicated that Rht‐B1c may originate from Rht‐B1h. These results suggest rich genetic diversity at the Rht‐1 loci and provide new resources for wheat breeding.</abstract><cop>China (Republic : 1949- )</cop><pub>Blackwell Publishing Ltd</pub><pmid>23992198</pmid><doi>10.1111/jipb.12103</doi><tpages>12</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1672-9072 |
| ispartof | Journal of integrative plant biology, 2013-11, Vol.55 (11), p.1026-1037 |
| issn | 1672-9072 1744-7909 |
| language | eng |
| recordid | cdi_wanfang_journals_zwxb201311004 |
| source | MEDLINE; Wiley Online Library All Journals; Alma/SFX Local Collection |
| subjects | Alleles Allelic variation Base Sequence China EcoTILLING Genetic Association Studies Genetic Loci - genetics Genetic Variation Genotype Gibberellins - pharmacology Molecular Sequence Data Mutation - genetics Plant Proteins - genetics Rht-1 Seeds - drug effects Seeds - genetics Triticum - anatomy & histology Triticum - drug effects Triticum - genetics wheat Yeast three hybrid |
| title | Novel Natural Allelic Variations at the Rht-1 Loci in Wheat |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-11T16%3A44%3A51IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-wanfang_jour_proqu&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Novel%20Natural%20Allelic%20Variations%20at%20the%20Rht-1%20Loci%20in%20Wheat&rft.jtitle=Journal%20of%20integrative%20plant%20biology&rft.au=Li,%20Aixia&rft.date=2013-11&rft.volume=55&rft.issue=11&rft.spage=1026&rft.epage=1037&rft.pages=1026-1037&rft.issn=1672-9072&rft.eissn=1744-7909&rft_id=info:doi/10.1111/jipb.12103&rft_dat=%3Cwanfang_jour_proqu%3Ezwxb201311004%3C/wanfang_jour_proqu%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1449276893&rft_id=info:pmid/23992198&rft_wanfj_id=zwxb201311004&rfr_iscdi=true |