The Genetic Architecture of Flowering Time and Photoperiod Sensitivity in Maize as Revealed by QTL Review and Meta Analysis
The control of flowering is not only important for reproduction, but also plays a key role in the processes of domestication and adaptation. To reveal the genetic architecture for flowering time and photoperiod sensitivity, a comprehensive evaluation of the relevant literature was performed and foll...
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| Veröffentlicht in: | Journal of integrative plant biology 2012-06, Vol.54 (6), p.358-373 |
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| container_title | Journal of integrative plant biology |
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| creator | Xu, Jie Liu, Yaxi Liu, Jian Cao, Moju Wang, Jing Lan, Hai Xu, Yunbi Lu, Yanli Pan, Guangtang Rong, Tingzhao |
| description | The control of flowering is not only important for reproduction, but also plays a key role in the processes of domestication and adaptation. To reveal the genetic architecture for flowering time and photoperiod sensitivity, a comprehensive evaluation of the relevant literature was performed and followed by meta analysis. A total of 25 synthetic con- sensus quantitative trait loci （QTL） and four hot-spot genomic regions were identified for photoperiod sensitivity including 11 genes related to photoperiod response or flower morphogenesis and development. Besides, a comparative analysis of the QTL for flowering time and photoperiod sensitivity highlighted the regions containing shared and unique QTL for the two traits. Candidate genes associated with maize flowering were identified through integrated analysis of the homologous genes for flowering time in plants and the consensus QTL regions for photoperiod sensitivity in maize （Zea mays L.）. Our results suggest that the combination of literature review, meta-analysis and homologous blast is an efficient approach to identify new candidate genes and create a global view of the genetic architecture for maize photoperiodic flowering. Sequences of candidate genes can be used to develop molecular markers for various models of marker-assisted selection, such as marker-assisted recurrent selection and genomic selection that can contribute significantly to crop environmental adaptation. |
| doi_str_mv | 10.1111/j.1744-7909.2012.01128.x |
| format | Article |
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To reveal the genetic architecture for flowering time and photoperiod sensitivity, a comprehensive evaluation of the relevant literature was performed and followed by meta analysis. A total of 25 synthetic con- sensus quantitative trait loci （QTL） and four hot-spot genomic regions were identified for photoperiod sensitivity including 11 genes related to photoperiod response or flower morphogenesis and development. Besides, a comparative analysis of the QTL for flowering time and photoperiod sensitivity highlighted the regions containing shared and unique QTL for the two traits. Candidate genes associated with maize flowering were identified through integrated analysis of the homologous genes for flowering time in plants and the consensus QTL regions for photoperiod sensitivity in maize （Zea mays L.）. Our results suggest that the combination of literature review, meta-analysis and homologous blast is an efficient approach to identify new candidate genes and create a global view of the genetic architecture for maize photoperiodic flowering. Sequences of candidate genes can be used to develop molecular markers for various models of marker-assisted selection, such as marker-assisted recurrent selection and genomic selection that can contribute significantly to crop environmental adaptation.</description><identifier>ISSN: 1672-9072</identifier><identifier>EISSN: 1744-7909</identifier><identifier>DOI: 10.1111/j.1744-7909.2012.01128.x</identifier><identifier>PMID: 22583799</identifier><language>eng</language><publisher>Melbourne, Australia: Blackwell Publishing Asia</publisher><subject>consensus quantitative trait loci (cQTL) ; corn ; flowering ; flowering time ; flowers ; Flowers - physiology ; Gene Expression Regulation, Plant ; genes ; Genes, Plant ; genetic markers ; Maize ; marker-assisted selection ; meta-analysis ; Meta分析 ; molecular breeding ; Photoperiod ; photoperiod sensitivity ; QTL ; Quantitative Trait Loci ; recurrent selection ; reproduction ; Zea mays ; Zea mays - genetics ; 光周期敏感性 ; 开花时间 ; 数量性状位点 ; 标记辅助选择 ; 玉米 ; 遗传结构</subject><ispartof>Journal of integrative plant biology, 2012-06, Vol.54 (6), p.358-373</ispartof><rights>2012 Institute of Botany, Chinese Academy of Sciences</rights><rights>2012 Institute of Botany, Chinese Academy of Sciences.</rights><rights>Copyright © Wanfang Data Co. 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To reveal the genetic architecture for flowering time and photoperiod sensitivity, a comprehensive evaluation of the relevant literature was performed and followed by meta analysis. A total of 25 synthetic con- sensus quantitative trait loci （QTL） and four hot-spot genomic regions were identified for photoperiod sensitivity including 11 genes related to photoperiod response or flower morphogenesis and development. Besides, a comparative analysis of the QTL for flowering time and photoperiod sensitivity highlighted the regions containing shared and unique QTL for the two traits. Candidate genes associated with maize flowering were identified through integrated analysis of the homologous genes for flowering time in plants and the consensus QTL regions for photoperiod sensitivity in maize （Zea mays L.）. Our results suggest that the combination of literature review, meta-analysis and homologous blast is an efficient approach to identify new candidate genes and create a global view of the genetic architecture for maize photoperiodic flowering. Sequences of candidate genes can be used to develop molecular markers for various models of marker-assisted selection, such as marker-assisted recurrent selection and genomic selection that can contribute significantly to crop environmental adaptation.</description><subject>consensus quantitative trait loci (cQTL)</subject><subject>corn</subject><subject>flowering</subject><subject>flowering time</subject><subject>flowers</subject><subject>Flowers - physiology</subject><subject>Gene Expression Regulation, Plant</subject><subject>genes</subject><subject>Genes, Plant</subject><subject>genetic markers</subject><subject>Maize</subject><subject>marker-assisted selection</subject><subject>meta-analysis</subject><subject>Meta分析</subject><subject>molecular breeding</subject><subject>Photoperiod</subject><subject>photoperiod sensitivity</subject><subject>QTL</subject><subject>Quantitative Trait Loci</subject><subject>recurrent selection</subject><subject>reproduction</subject><subject>Zea mays</subject><subject>Zea mays - genetics</subject><subject>光周期敏感性</subject><subject>开花时间</subject><subject>数量性状位点</subject><subject>标记辅助选择</subject><subject>玉米</subject><subject>遗传结构</subject><issn>1672-9072</issn><issn>1744-7909</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkUFz0zAQhT0MDC2FvwDiwNFGkm1JvjATCk0LKQSaDkeNpKwSpY4dLKeJy59HrkPO6CJp9d43u09RhAhOSFjvVwnhWRbzAhcJxYQmmBAqkv2T6PT48DScGadxgTk9iV54v8I4FZjR59EJpblIeVGcRn9mS0BjqKB1Bo0as3QtmHbbAKotuijrHTSuWqCZWwNS1RxNl3Vbb0KxnqMbqLxr3b1rO-QqdK3cQxB59BPuQZUwR7pDP2aT_u5g92i_hlahUaXKzjv_MnpmVenh1WE_i24vPs_OL-PJ9_HV-WgSmyzPRUwFJynTjBitDU-5zqlhQoeitsaKzEBhrLWEW2My0BkFlWrCBANCU2NJeha9G7g7VVlVLeSq3jahBy8fdnvd54cZxr1ODDrT1N43YOWmcWvVdJJg2ecuV7KPV_bxyt4nH3OX-2B9PVg3W72G-dH4L-gg-HDowZXQ_TdYfrmafuyPARAPAOdb2B8BqrmTLISSy1_fxnL69dOYTNNLyYP-zaC3qpZq0Tgvb28COsNhVCpIHhRvD-Mu62rxO3zzkZrRlApMWPoX7qq1jw</recordid><startdate>201206</startdate><enddate>201206</enddate><creator>Xu, Jie</creator><creator>Liu, Yaxi</creator><creator>Liu, Jian</creator><creator>Cao, Moju</creator><creator>Wang, Jing</creator><creator>Lan, Hai</creator><creator>Xu, Yunbi</creator><creator>Lu, Yanli</creator><creator>Pan, Guangtang</creator><creator>Rong, Tingzhao</creator><general>Blackwell Publishing Asia</general><general>International Maize and Wheat Improvement Center(CIMMYT), El Batán 56130, Texcoco, Mexico</general><general>Key Laboratory of Biology and Genetic Improvement of Maize in Southwest Region, Ministry of Agriculture, China%Triticeae Research Institute, Sichuan Agricultural University, Wenjiang 611130, Sichuan, China%Institute of Crop Sciences, National Key Facilities for Crop Genetic Resources and Improvement, Chinese Academy of Agricultural Sciences, Beijing 100081, China</general><general>Maize Research Institute, Sichuan Agricultural University, Wenjiang 611130, Sichuan, China</general><scope>2RA</scope><scope>92L</scope><scope>CQIGP</scope><scope>W94</scope><scope>WU4</scope><scope>~WA</scope><scope>FBQ</scope><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>2B.</scope><scope>4A8</scope><scope>92I</scope><scope>93N</scope><scope>PSX</scope><scope>TCJ</scope></search><sort><creationdate>201206</creationdate><title>The Genetic Architecture of Flowering Time and Photoperiod Sensitivity in Maize as Revealed by QTL Review and Meta Analysis</title><author>Xu, Jie ; 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To reveal the genetic architecture for flowering time and photoperiod sensitivity, a comprehensive evaluation of the relevant literature was performed and followed by meta analysis. A total of 25 synthetic con- sensus quantitative trait loci （QTL） and four hot-spot genomic regions were identified for photoperiod sensitivity including 11 genes related to photoperiod response or flower morphogenesis and development. Besides, a comparative analysis of the QTL for flowering time and photoperiod sensitivity highlighted the regions containing shared and unique QTL for the two traits. Candidate genes associated with maize flowering were identified through integrated analysis of the homologous genes for flowering time in plants and the consensus QTL regions for photoperiod sensitivity in maize （Zea mays L.）. Our results suggest that the combination of literature review, meta-analysis and homologous blast is an efficient approach to identify new candidate genes and create a global view of the genetic architecture for maize photoperiodic flowering. Sequences of candidate genes can be used to develop molecular markers for various models of marker-assisted selection, such as marker-assisted recurrent selection and genomic selection that can contribute significantly to crop environmental adaptation.</abstract><cop>Melbourne, Australia</cop><pub>Blackwell Publishing Asia</pub><pmid>22583799</pmid><doi>10.1111/j.1744-7909.2012.01128.x</doi><tpages>16</tpages></addata></record> |
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| ispartof | Journal of integrative plant biology, 2012-06, Vol.54 (6), p.358-373 |
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| subjects | consensus quantitative trait loci (cQTL) corn flowering flowering time flowers Flowers - physiology Gene Expression Regulation, Plant genes Genes, Plant genetic markers Maize marker-assisted selection meta-analysis Meta分析 molecular breeding Photoperiod photoperiod sensitivity QTL Quantitative Trait Loci recurrent selection reproduction Zea mays Zea mays - genetics 光周期敏感性 开花时间 数量性状位点 标记辅助选择 玉米 遗传结构 |
| title | The Genetic Architecture of Flowering Time and Photoperiod Sensitivity in Maize as Revealed by QTL Review and Meta Analysis |
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