A comparative analysis of β-mannanases of bacteria from Antarctica and Malaysia
β-mannanase is an enzyme that is commonly expressed in environmental bacteria. It degrades hemicellulose found in plant material and recycles nutrients back into the environment. Because this enzyme significantly contributes to biodegradation and has recently been applied in industry, we conducted a...
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description | β-mannanase is an enzyme that is commonly expressed in environmental bacteria. It degrades hemicellulose found in plant material and recycles nutrients back into the environment. Because this enzyme significantly contributes to biodegradation and has recently been applied in industry, we conducted a comparative analysis of bacterial isolates found in soil samples from Schirmacher Oasis, Antarctica, and Sabah, Malaysia that were capable of degrading mannan. A total of 9 bacterial isolates from Antarctica and 30 bacterial isolates from Malaysia exhibited β-mannanase activity. These bacteria were differentiated and clustered using their random amplified polymorphic DNA (RAPD) profiles, and the β-mannanase activity of these isolates was tested at different temperatures and pH. Five out of 9 Antarctica isolates and seven out of 30 Malaysian isolates were identified based on their 16S rDNA sequences. Identified bacterial isolates from Antarctica were: MP1 (Bacillus amyloliquefaciens), MP2 (Bacillus pumilus), MP5 (Bacilluspumilus), A40 (Arthrobacter sp.), and C27 (Arthrobacter oxydans). Identified bacterial isolates from Ma- laysia were: Y1 (Paenibacillus sp.), Y2 (Bacillus sp.), Y16 (Paenibacillus sp.), Y18 (Paenibacillus sp.), A7 (Paenibacillus sp.), B26 (Streptomyces sp.), and D4 (Paenibacillus amylolyticus). β-mannanases produced by the Antarctica bacterial isolates MP1 (Bacillus amyloliquefaciens) and A40 (Arthrobacter sp.) were active at 5℃ and 20℃, respectively, while the β-mannanase pro- duced by the bacterial isolate from Malaysia, A7 (Paenibacillus sp.), was active at 35 ℃. |
doi_str_mv | 10.3724/SP.J.1085.2013.00202 |
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It degrades hemicellulose found in plant material and recycles nutrients back into the environment. Because this enzyme significantly contributes to biodegradation and has recently been applied in industry, we conducted a comparative analysis of bacterial isolates found in soil samples from Schirmacher Oasis, Antarctica, and Sabah, Malaysia that were capable of degrading mannan. A total of 9 bacterial isolates from Antarctica and 30 bacterial isolates from Malaysia exhibited β-mannanase activity. These bacteria were differentiated and clustered using their random amplified polymorphic DNA (RAPD) profiles, and the β-mannanase activity of these isolates was tested at different temperatures and pH. Five out of 9 Antarctica isolates and seven out of 30 Malaysian isolates were identified based on their 16S rDNA sequences. Identified bacterial isolates from Antarctica were: MP1 (Bacillus amyloliquefaciens), MP2 (Bacillus pumilus), MP5 (Bacilluspumilus), A40 (Arthrobacter sp.), and C27 (Arthrobacter oxydans). Identified bacterial isolates from Ma- laysia were: Y1 (Paenibacillus sp.), Y2 (Bacillus sp.), Y16 (Paenibacillus sp.), Y18 (Paenibacillus sp.), A7 (Paenibacillus sp.), B26 (Streptomyces sp.), and D4 (Paenibacillus amylolyticus). β-mannanases produced by the Antarctica bacterial isolates MP1 (Bacillus amyloliquefaciens) and A40 (Arthrobacter sp.) were active at 5℃ and 20℃, respectively, while the β-mannanase pro- duced by the bacterial isolate from Malaysia, A7 (Paenibacillus sp.), was active at 35 ℃.</description><identifier>ISSN: 1674-9928</identifier><identifier>DOI: 10.3724/SP.J.1085.2013.00202</identifier><language>eng</language><publisher>Biotechnology Research Institute, Universiti Malaysia Sabah, Jalan UMS, Kota Kinabalu 88400, Malaysia</publisher><subject>rDNA序列 ; 南极洲 ; 环境细菌 ; 甘露聚糖酶 ; 细菌鉴定 ; 解淀粉芽孢杆菌 ; 随机扩增多态性DNA ; 马来西亚</subject><ispartof>ADVANCES IN POLAR SCIENCE, 2013-12, Vol.24 (4), p.202-207</ispartof><rights>Copyright © Wanfang Data Co. Ltd. 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Because this enzyme significantly contributes to biodegradation and has recently been applied in industry, we conducted a comparative analysis of bacterial isolates found in soil samples from Schirmacher Oasis, Antarctica, and Sabah, Malaysia that were capable of degrading mannan. A total of 9 bacterial isolates from Antarctica and 30 bacterial isolates from Malaysia exhibited β-mannanase activity. These bacteria were differentiated and clustered using their random amplified polymorphic DNA (RAPD) profiles, and the β-mannanase activity of these isolates was tested at different temperatures and pH. Five out of 9 Antarctica isolates and seven out of 30 Malaysian isolates were identified based on their 16S rDNA sequences. Identified bacterial isolates from Antarctica were: MP1 (Bacillus amyloliquefaciens), MP2 (Bacillus pumilus), MP5 (Bacilluspumilus), A40 (Arthrobacter sp.), and C27 (Arthrobacter oxydans). Identified bacterial isolates from Ma- laysia were: Y1 (Paenibacillus sp.), Y2 (Bacillus sp.), Y16 (Paenibacillus sp.), Y18 (Paenibacillus sp.), A7 (Paenibacillus sp.), B26 (Streptomyces sp.), and D4 (Paenibacillus amylolyticus). β-mannanases produced by the Antarctica bacterial isolates MP1 (Bacillus amyloliquefaciens) and A40 (Arthrobacter sp.) were active at 5℃ and 20℃, respectively, while the β-mannanase pro- duced by the bacterial isolate from Malaysia, A7 (Paenibacillus sp.), was active at 35 ℃.</description><subject>rDNA序列</subject><subject>南极洲</subject><subject>环境细菌</subject><subject>甘露聚糖酶</subject><subject>细菌鉴定</subject><subject>解淀粉芽孢杆菌</subject><subject>随机扩增多态性DNA</subject><subject>马来西亚</subject><issn>1674-9928</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><recordid>eNo1kMtOwzAQRb0Aiar0D1iEFasEj-00ybKqeFVFVCqsrbFjF5cmKXZ49Lf4EL6JpC2rka7mzB0dQi6AJjxj4nq5SGYJ0DxNGAWeUMooOyEDGGciLgqWn5FRCE5RyEQ2znIxIItJpJtqix5b92kirHGzCy5EjY1-f-IK67qLgtkHCnVrvMPI-qaKJnWLXrdOY0eV0SNusCPxnJxa3AQzOs4hebm9eZ7ex_Onu4fpZB5roJzHwLVW1FiVlSwvQQvDGIIBYUWqCkWFThUoWhaMa1aODRihkeYWjBXIrOJDcnW4-4W1xXol182H774Pcl2-fUvTC6CCdl1DIg6b2jcheGPl1rsK_U4Clb02uVzImey1yZ6Se20ddnnEXpt69e66in9O5LwQkAL_A_0hbvY</recordid><startdate>20131201</startdate><enddate>20131201</enddate><creator>Clemente Michael Vui Ling Wong] Heng Keat Tam Hui Yee Yong</creator><general>Biotechnology Research Institute, Universiti Malaysia Sabah, Jalan UMS, Kota Kinabalu 88400, Malaysia</general><scope>2RA</scope><scope>92L</scope><scope>CQIGP</scope><scope>W94</scope><scope>~WA</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>2B.</scope><scope>4A8</scope><scope>92I</scope><scope>93N</scope><scope>PSX</scope><scope>TCJ</scope></search><sort><creationdate>20131201</creationdate><title>A comparative analysis of β-mannanases of bacteria from Antarctica and Malaysia</title><author>Clemente Michael Vui Ling Wong] Heng Keat Tam Hui Yee Yong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c1033-13ccb0efb7d28d1c4e22a1e14f45b9b04c5b1b0d923c2d6e1e4ca08f1ef4a2fb3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>rDNA序列</topic><topic>南极洲</topic><topic>环境细菌</topic><topic>甘露聚糖酶</topic><topic>细菌鉴定</topic><topic>解淀粉芽孢杆菌</topic><topic>随机扩增多态性DNA</topic><topic>马来西亚</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Clemente Michael Vui Ling Wong] Heng Keat Tam Hui Yee Yong</creatorcontrib><collection>中文科技期刊数据库</collection><collection>中文科技期刊数据库-CALIS站点</collection><collection>中文科技期刊数据库-7.0平台</collection><collection>中文科技期刊数据库-自然科学</collection><collection>中文科技期刊数据库- 镜像站点</collection><collection>CrossRef</collection><collection>Wanfang Data Journals - Hong Kong</collection><collection>WANFANG Data Centre</collection><collection>Wanfang Data Journals</collection><collection>万方数据期刊 - 香港版</collection><collection>China Online Journals (COJ)</collection><collection>China Online Journals (COJ)</collection><jtitle>ADVANCES IN POLAR SCIENCE</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Clemente Michael Vui Ling Wong] Heng Keat Tam Hui Yee Yong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A comparative analysis of β-mannanases of bacteria from Antarctica and Malaysia</atitle><jtitle>ADVANCES IN POLAR SCIENCE</jtitle><addtitle>Advances in Polar Science</addtitle><date>2013-12-01</date><risdate>2013</risdate><volume>24</volume><issue>4</issue><spage>202</spage><epage>207</epage><pages>202-207</pages><issn>1674-9928</issn><abstract>β-mannanase is an enzyme that is commonly expressed in environmental bacteria. It degrades hemicellulose found in plant material and recycles nutrients back into the environment. Because this enzyme significantly contributes to biodegradation and has recently been applied in industry, we conducted a comparative analysis of bacterial isolates found in soil samples from Schirmacher Oasis, Antarctica, and Sabah, Malaysia that were capable of degrading mannan. A total of 9 bacterial isolates from Antarctica and 30 bacterial isolates from Malaysia exhibited β-mannanase activity. These bacteria were differentiated and clustered using their random amplified polymorphic DNA (RAPD) profiles, and the β-mannanase activity of these isolates was tested at different temperatures and pH. Five out of 9 Antarctica isolates and seven out of 30 Malaysian isolates were identified based on their 16S rDNA sequences. Identified bacterial isolates from Antarctica were: MP1 (Bacillus amyloliquefaciens), MP2 (Bacillus pumilus), MP5 (Bacilluspumilus), A40 (Arthrobacter sp.), and C27 (Arthrobacter oxydans). Identified bacterial isolates from Ma- laysia were: Y1 (Paenibacillus sp.), Y2 (Bacillus sp.), Y16 (Paenibacillus sp.), Y18 (Paenibacillus sp.), A7 (Paenibacillus sp.), B26 (Streptomyces sp.), and D4 (Paenibacillus amylolyticus). β-mannanases produced by the Antarctica bacterial isolates MP1 (Bacillus amyloliquefaciens) and A40 (Arthrobacter sp.) were active at 5℃ and 20℃, respectively, while the β-mannanase pro- duced by the bacterial isolate from Malaysia, A7 (Paenibacillus sp.), was active at 35 ℃.</abstract><pub>Biotechnology Research Institute, Universiti Malaysia Sabah, Jalan UMS, Kota Kinabalu 88400, Malaysia</pub><doi>10.3724/SP.J.1085.2013.00202</doi><tpages>6</tpages></addata></record> |
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subjects | rDNA序列 南极洲 环境细菌 甘露聚糖酶 细菌鉴定 解淀粉芽孢杆菌 随机扩增多态性DNA 马来西亚 |
title | A comparative analysis of β-mannanases of bacteria from Antarctica and Malaysia |
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