Diversity and distribution of bacterioplankton in the coastal upwelling waters off Hainan Island, China
The diversity, community composition and 16S rRNA gene abundance of bacterioplankton along a transect across an upwelling area off the eastern coast of Hainan Island (the Qiongdong upwelling) were investigated in August of 2016 using high throughput sequencing and quantitative PCR assay of 16S rRNA...
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| Veröffentlicht in: | Acta oceanologica Sinica 2022-03, Vol.41 (3), p.76-85 |
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| creator | Gong, Fahui Ji, Qixing Li, Guihao Yin, Kedong Gong, Jun |
| description | The diversity, community composition and 16S rRNA gene abundance of bacterioplankton along a transect across an upwelling area off the eastern coast of Hainan Island (the Qiongdong upwelling) were investigated in August of 2016 using high throughput sequencing and quantitative PCR assay of 16S rRNA genes. Compared with the offshore stations, the inner-shelf stations had higher bacterial gene abundance (up to 3 fold) and operational taxonomic unit richness, a result of the influence of upwelled and fresher waters. Overall, a majority of the reads were affiliated with Gammaproteobacteria (11%–74%) and Alphaproteobacteria (14%–43%). The structure of the bacterial community was significantly affected by salinity, dissolved oxygen, NO
3
−
and NH
4
+
, which also defined the physicochemical features of the upwelled waters. Horizontally, the relative abundances and gene abundances of
Rhodobacteraceae
, SAR86, Cyanobacteria and Bacteroidetes in eutrophic zone decreased from the inner to outer shelves and slope, whereas
Alteromonas, Vibrio
and
Oceanospirillaceae
exhibited an opposite trend. This study stresses the riverine influence on the oceanographic condition and spatial variability of bacterioplankton diversity and distribution in the Qiongdong upwelling. |
| doi_str_mv | 10.1007/s13131-021-1807-1 |
| format | Article |
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3
−
and NH
4
+
, which also defined the physicochemical features of the upwelled waters. Horizontally, the relative abundances and gene abundances of
Rhodobacteraceae
, SAR86, Cyanobacteria and Bacteroidetes in eutrophic zone decreased from the inner to outer shelves and slope, whereas
Alteromonas, Vibrio
and
Oceanospirillaceae
exhibited an opposite trend. This study stresses the riverine influence on the oceanographic condition and spatial variability of bacterioplankton diversity and distribution in the Qiongdong upwelling.</description><identifier>ISSN: 0253-505X</identifier><identifier>EISSN: 1869-1099</identifier><identifier>DOI: 10.1007/s13131-021-1807-1</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Abundance ; Bacteria ; Bacterioplankton ; Biomass ; Chlorophyll ; Climatology ; Coastal upwelling ; Coastal waters ; Coasts ; Community composition ; Cyanobacteria ; Dissolved oxygen ; Distribution ; Earth and Environmental Science ; Earth Sciences ; Ecology ; Engineering Fluid Dynamics ; Environmental Chemistry ; Eutrophication ; Genes ; Marine & Freshwater Sciences ; Nanoplankton ; Next-generation sequencing ; Nucleotide sequence ; Ocean circulation ; Oceanography ; Offshore ; Oxygen ; PCR ; Plankton ; rRNA 16S ; Salinity ; Shelving ; Spatial variability ; Spatial variations ; Taxonomy ; Upwelling</subject><ispartof>Acta oceanologica Sinica, 2022-03, Vol.41 (3), p.76-85</ispartof><rights>Chinese Society for Oceanography and Springer-Verlag GmbH Germany, part of Springer Nature 2022</rights><rights>Chinese Society for Oceanography and Springer-Verlag GmbH Germany, part of Springer Nature 2022.</rights><rights>Copyright © Wanfang Data Co. Ltd. All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c376t-93484bf7435f1128d8aafeedeb60ce6e40714ff31398ba6b855cf98ca2d15b373</citedby><cites>FETCH-LOGICAL-c376t-93484bf7435f1128d8aafeedeb60ce6e40714ff31398ba6b855cf98ca2d15b373</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Uhttp://www.wanfangdata.com.cn/images/PeriodicalImages/hyxb-e/hyxb-e.jpg</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s13131-021-1807-1$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2919540079?pq-origsite=primo$$EHTML$$P50$$Gproquest$$H</linktohtml><link.rule.ids>314,780,784,21388,27924,27925,33744,41488,42557,43805,51319,64385,64389,72469</link.rule.ids></links><search><creatorcontrib>Gong, Fahui</creatorcontrib><creatorcontrib>Ji, Qixing</creatorcontrib><creatorcontrib>Li, Guihao</creatorcontrib><creatorcontrib>Yin, Kedong</creatorcontrib><creatorcontrib>Gong, Jun</creatorcontrib><title>Diversity and distribution of bacterioplankton in the coastal upwelling waters off Hainan Island, China</title><title>Acta oceanologica Sinica</title><addtitle>Acta Oceanol. Sin</addtitle><description>The diversity, community composition and 16S rRNA gene abundance of bacterioplankton along a transect across an upwelling area off the eastern coast of Hainan Island (the Qiongdong upwelling) were investigated in August of 2016 using high throughput sequencing and quantitative PCR assay of 16S rRNA genes. Compared with the offshore stations, the inner-shelf stations had higher bacterial gene abundance (up to 3 fold) and operational taxonomic unit richness, a result of the influence of upwelled and fresher waters. Overall, a majority of the reads were affiliated with Gammaproteobacteria (11%–74%) and Alphaproteobacteria (14%–43%). The structure of the bacterial community was significantly affected by salinity, dissolved oxygen, NO
3
−
and NH
4
+
, which also defined the physicochemical features of the upwelled waters. Horizontally, the relative abundances and gene abundances of
Rhodobacteraceae
, SAR86, Cyanobacteria and Bacteroidetes in eutrophic zone decreased from the inner to outer shelves and slope, whereas
Alteromonas, Vibrio
and
Oceanospirillaceae
exhibited an opposite trend. This study stresses the riverine influence on the oceanographic condition and spatial variability of bacterioplankton diversity and distribution in the Qiongdong upwelling.</description><subject>Abundance</subject><subject>Bacteria</subject><subject>Bacterioplankton</subject><subject>Biomass</subject><subject>Chlorophyll</subject><subject>Climatology</subject><subject>Coastal upwelling</subject><subject>Coastal waters</subject><subject>Coasts</subject><subject>Community composition</subject><subject>Cyanobacteria</subject><subject>Dissolved oxygen</subject><subject>Distribution</subject><subject>Earth and Environmental Science</subject><subject>Earth Sciences</subject><subject>Ecology</subject><subject>Engineering Fluid Dynamics</subject><subject>Environmental Chemistry</subject><subject>Eutrophication</subject><subject>Genes</subject><subject>Marine & Freshwater Sciences</subject><subject>Nanoplankton</subject><subject>Next-generation sequencing</subject><subject>Nucleotide sequence</subject><subject>Ocean circulation</subject><subject>Oceanography</subject><subject>Offshore</subject><subject>Oxygen</subject><subject>PCR</subject><subject>Plankton</subject><subject>rRNA 16S</subject><subject>Salinity</subject><subject>Shelving</subject><subject>Spatial variability</subject><subject>Spatial variations</subject><subject>Taxonomy</subject><subject>Upwelling</subject><issn>0253-505X</issn><issn>1869-1099</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kcFqGzEQhkVIoI6TB-hN0EMv3WRGWu2ujsFNG0MglwRyE9pdyZaz1TqSXNdvX5kN-NSiwyDxfTNofkI-I9wgQH0bkedTAMMCG6gLPCMzbCpZIEh5TmbABC8EiNdP5DLGDYBAwesZWX13v02ILh2o9j3tXUzBtbvkRk9HS1vdJRPcuB20f0v5zXma1oZ2o45JD3S33ZthcH5F9zqDMTuWPmjntafLmKX-G12s8_WKXFg9RHP9Uefk5cf98-KheHz6uVzcPRYdr6tUSF42ZWvrkguLyJq-0doa05u2gs5UpoQaS2vzX2XT6qpthOisbDrNehQtr_mcfJ367rW32q_UZtwFnyeq9eFPqwwDxoADyEx-mchtGN93JqYTyiRKUea1_p-quATGoT5OxYnqwhhjMFZtg_ulw0EhqGM-aspH5XzUMR-F2WGTEzPrVyacOv9b-gu-ypJ1</recordid><startdate>20220301</startdate><enddate>20220301</enddate><creator>Gong, Fahui</creator><creator>Ji, Qixing</creator><creator>Li, Guihao</creator><creator>Yin, Kedong</creator><creator>Gong, Jun</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><general>Southern Marine Science and Engineering Guangdong Laboratory(Zhuhai),Zhuhai 519080,China</general><general>Southern Marine Science and Engineering Guangdong Laboratory(Zhuhai),Zhuhai 519080,China%School of Marine Sciences,Sun Yat-Sen University,Zhuhai 519082,China</general><general>Key Laboratory of Marine Resources and Coastal Engineering in Guangdong Province,Guangzhou 510006,China</general><general>School of Marine Sciences,Sun Yat-Sen University,Zhuhai 519082,China</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7ST</scope><scope>7TG</scope><scope>7TN</scope><scope>C1K</scope><scope>F1W</scope><scope>H96</scope><scope>KL.</scope><scope>L.G</scope><scope>SOI</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>BKSAR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>H95</scope><scope>H97</scope><scope>H98</scope><scope>H99</scope><scope>HCIFZ</scope><scope>L.F</scope><scope>LK8</scope><scope>M7P</scope><scope>P64</scope><scope>PATMY</scope><scope>PCBAR</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PYCSY</scope><scope>2B.</scope><scope>4A8</scope><scope>92I</scope><scope>93N</scope><scope>PSX</scope><scope>TCJ</scope></search><sort><creationdate>20220301</creationdate><title>Diversity and distribution of bacterioplankton in the coastal upwelling waters off Hainan Island, China</title><author>Gong, Fahui ; Ji, Qixing ; Li, Guihao ; Yin, Kedong ; Gong, Jun</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c376t-93484bf7435f1128d8aafeedeb60ce6e40714ff31398ba6b855cf98ca2d15b373</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Abundance</topic><topic>Bacteria</topic><topic>Bacterioplankton</topic><topic>Biomass</topic><topic>Chlorophyll</topic><topic>Climatology</topic><topic>Coastal upwelling</topic><topic>Coastal waters</topic><topic>Coasts</topic><topic>Community composition</topic><topic>Cyanobacteria</topic><topic>Dissolved oxygen</topic><topic>Distribution</topic><topic>Earth and Environmental Science</topic><topic>Earth Sciences</topic><topic>Ecology</topic><topic>Engineering Fluid Dynamics</topic><topic>Environmental Chemistry</topic><topic>Eutrophication</topic><topic>Genes</topic><topic>Marine & Freshwater Sciences</topic><topic>Nanoplankton</topic><topic>Next-generation sequencing</topic><topic>Nucleotide sequence</topic><topic>Ocean circulation</topic><topic>Oceanography</topic><topic>Offshore</topic><topic>Oxygen</topic><topic>PCR</topic><topic>Plankton</topic><topic>rRNA 16S</topic><topic>Salinity</topic><topic>Shelving</topic><topic>Spatial variability</topic><topic>Spatial variations</topic><topic>Taxonomy</topic><topic>Upwelling</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Gong, Fahui</creatorcontrib><creatorcontrib>Ji, Qixing</creatorcontrib><creatorcontrib>Li, Guihao</creatorcontrib><creatorcontrib>Yin, Kedong</creatorcontrib><creatorcontrib>Gong, Jun</creatorcontrib><collection>CrossRef</collection><collection>Environment Abstracts</collection><collection>Meteorological & Geoastrophysical Abstracts</collection><collection>Oceanic Abstracts</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 2: Ocean Technology, Policy & Non-Living Resources</collection><collection>Meteorological & Geoastrophysical Abstracts - Academic</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Environment Abstracts</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Earth, Atmospheric & Aquatic Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 3: Aquatic Pollution & Environmental Quality</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Aquaculture Abstracts</collection><collection>ASFA: Marine Biotechnology Abstracts</collection><collection>SciTech Premium Collection</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Marine Biotechnology Abstracts</collection><collection>ProQuest Biological Science Collection</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environmental Science Database</collection><collection>Earth, Atmospheric & Aquatic Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Environmental Science Collection</collection><collection>Wanfang Data Journals - Hong Kong</collection><collection>WANFANG Data Centre</collection><collection>Wanfang Data Journals</collection><collection>万方数据期刊 - 香港版</collection><collection>China Online Journals (COJ)</collection><collection>China Online Journals (COJ)</collection><jtitle>Acta oceanologica Sinica</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Gong, Fahui</au><au>Ji, Qixing</au><au>Li, Guihao</au><au>Yin, Kedong</au><au>Gong, Jun</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Diversity and distribution of bacterioplankton in the coastal upwelling waters off Hainan Island, China</atitle><jtitle>Acta oceanologica Sinica</jtitle><stitle>Acta Oceanol. Sin</stitle><date>2022-03-01</date><risdate>2022</risdate><volume>41</volume><issue>3</issue><spage>76</spage><epage>85</epage><pages>76-85</pages><issn>0253-505X</issn><eissn>1869-1099</eissn><abstract>The diversity, community composition and 16S rRNA gene abundance of bacterioplankton along a transect across an upwelling area off the eastern coast of Hainan Island (the Qiongdong upwelling) were investigated in August of 2016 using high throughput sequencing and quantitative PCR assay of 16S rRNA genes. Compared with the offshore stations, the inner-shelf stations had higher bacterial gene abundance (up to 3 fold) and operational taxonomic unit richness, a result of the influence of upwelled and fresher waters. Overall, a majority of the reads were affiliated with Gammaproteobacteria (11%–74%) and Alphaproteobacteria (14%–43%). The structure of the bacterial community was significantly affected by salinity, dissolved oxygen, NO
3
−
and NH
4
+
, which also defined the physicochemical features of the upwelled waters. Horizontally, the relative abundances and gene abundances of
Rhodobacteraceae
, SAR86, Cyanobacteria and Bacteroidetes in eutrophic zone decreased from the inner to outer shelves and slope, whereas
Alteromonas, Vibrio
and
Oceanospirillaceae
exhibited an opposite trend. This study stresses the riverine influence on the oceanographic condition and spatial variability of bacterioplankton diversity and distribution in the Qiongdong upwelling.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><doi>10.1007/s13131-021-1807-1</doi><tpages>10</tpages></addata></record> |
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| ispartof | Acta oceanologica Sinica, 2022-03, Vol.41 (3), p.76-85 |
| issn | 0253-505X 1869-1099 |
| language | eng |
| recordid | cdi_wanfang_journals_hyxb_e202203009 |
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| subjects | Abundance Bacteria Bacterioplankton Biomass Chlorophyll Climatology Coastal upwelling Coastal waters Coasts Community composition Cyanobacteria Dissolved oxygen Distribution Earth and Environmental Science Earth Sciences Ecology Engineering Fluid Dynamics Environmental Chemistry Eutrophication Genes Marine & Freshwater Sciences Nanoplankton Next-generation sequencing Nucleotide sequence Ocean circulation Oceanography Offshore Oxygen PCR Plankton rRNA 16S Salinity Shelving Spatial variability Spatial variations Taxonomy Upwelling |
| title | Diversity and distribution of bacterioplankton in the coastal upwelling waters off Hainan Island, China |
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