Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes

Patrick Concannon and colleagues present a type 1 diabetes genome-wide association study and meta-analysis in 7,514 cases and 9,045 reference samples, reporting 22 newly identified loci. Type 1 diabetes (T1D) is a common autoimmune disorder that arises from the action of multiple genetic and environ...

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Veröffentlicht in:Nature genetics 2009-06, Vol.41 (6), p.703-707
Hauptverfasser: Barrett, Jeffrey C, Clayton, David G, Concannon, Patrick, Akolkar, Beena, Cooper, Jason D, Erlich, Henry A, Julier, Cécile, Morahan, Grant, Nerup, Jørn, Nierras, Concepcion, Plagnol, Vincent, Pociot, Flemming, Schuilenburg, Helen, Smyth, Deborah J, Stevens, Helen, Todd, John A, Walker, Neil M, Rich, Stephen S
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container_issue 6
container_start_page 703
container_title Nature genetics
container_volume 41
creator Barrett, Jeffrey C
Clayton, David G
Concannon, Patrick
Akolkar, Beena
Cooper, Jason D
Erlich, Henry A
Julier, Cécile
Morahan, Grant
Nerup, Jørn
Nierras, Concepcion
Plagnol, Vincent
Pociot, Flemming
Schuilenburg, Helen
Smyth, Deborah J
Stevens, Helen
Todd, John A
Walker, Neil M
Rich, Stephen S
description Patrick Concannon and colleagues present a type 1 diabetes genome-wide association study and meta-analysis in 7,514 cases and 9,045 reference samples, reporting 22 newly identified loci. Type 1 diabetes (T1D) is a common autoimmune disorder that arises from the action of multiple genetic and environmental risk factors. We report the findings of a genome-wide association study of T1D, combined in a meta-analysis with two previously published studies. The total sample set included 7,514 cases and 9,045 reference samples. Forty-one distinct genomic locations provided evidence for association with T1D in the meta-analysis ( P < 10 −6 ). After excluding previously reported associations, we further tested 27 regions in an independent set of 4,267 cases, 4,463 controls and 2,319 affected sib-pair (ASP) families. Of these, 18 regions were replicated ( P < 0.01; overall P < 5 × 10 −8 ) and 4 additional regions provided nominal evidence of replication ( P < 0.05). The many new candidate genes suggested by these results include IL10 , IL19 , IL20 , GLIS3 , CD69 and IL27 .
doi_str_mv 10.1038/ng.381
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Type 1 diabetes (T1D) is a common autoimmune disorder that arises from the action of multiple genetic and environmental risk factors. We report the findings of a genome-wide association study of T1D, combined in a meta-analysis with two previously published studies. The total sample set included 7,514 cases and 9,045 reference samples. Forty-one distinct genomic locations provided evidence for association with T1D in the meta-analysis ( P &lt; 10 −6 ). After excluding previously reported associations, we further tested 27 regions in an independent set of 4,267 cases, 4,463 controls and 2,319 affected sib-pair (ASP) families. Of these, 18 regions were replicated ( P &lt; 0.01; overall P &lt; 5 × 10 −8 ) and 4 additional regions provided nominal evidence of replication ( P &lt; 0.05). 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Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health &amp; Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Research Library</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>Immunology Abstracts</collection><collection>MEDLINE - Academic</collection><collection>SwePub</collection><collection>SwePub Articles</collection><collection>SWEPUB Freely available online</collection><collection>SwePub Articles full text</collection><jtitle>Nature genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Barrett, Jeffrey C</au><au>Clayton, David G</au><au>Concannon, Patrick</au><au>Akolkar, Beena</au><au>Cooper, Jason D</au><au>Erlich, Henry A</au><au>Julier, Cécile</au><au>Morahan, Grant</au><au>Nerup, Jørn</au><au>Nierras, Concepcion</au><au>Plagnol, Vincent</au><au>Pociot, Flemming</au><au>Schuilenburg, Helen</au><au>Smyth, Deborah J</au><au>Stevens, Helen</au><au>Todd, John A</au><au>Walker, Neil M</au><au>Rich, Stephen S</au><aucorp>Type 1 Diabetes Genetics Consortium</aucorp><aucorp>The Type 1 Diabetes Genetics Consortium</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes</atitle><jtitle>Nature genetics</jtitle><stitle>Nat Genet</stitle><addtitle>Nat Genet</addtitle><date>2009-06-01</date><risdate>2009</risdate><volume>41</volume><issue>6</issue><spage>703</spage><epage>707</epage><pages>703-707</pages><issn>1061-4036</issn><issn>1546-1718</issn><eissn>1546-1718</eissn><coden>NGENEC</coden><abstract>Patrick Concannon and colleagues present a type 1 diabetes genome-wide association study and meta-analysis in 7,514 cases and 9,045 reference samples, reporting 22 newly identified loci. Type 1 diabetes (T1D) is a common autoimmune disorder that arises from the action of multiple genetic and environmental risk factors. We report the findings of a genome-wide association study of T1D, combined in a meta-analysis with two previously published studies. The total sample set included 7,514 cases and 9,045 reference samples. Forty-one distinct genomic locations provided evidence for association with T1D in the meta-analysis ( P &lt; 10 −6 ). After excluding previously reported associations, we further tested 27 regions in an independent set of 4,267 cases, 4,463 controls and 2,319 affected sib-pair (ASP) families. Of these, 18 regions were replicated ( P &lt; 0.01; overall P &lt; 5 × 10 −8 ) and 4 additional regions provided nominal evidence of replication ( P &lt; 0.05). The many new candidate genes suggested by these results include IL10 , IL19 , IL20 , GLIS3 , CD69 and IL27 .</abstract><cop>New York</cop><pub>Nature Publishing Group US</pub><pmid>19430480</pmid><doi>10.1038/ng.381</doi><tpages>5</tpages><oa>free_for_read</oa></addata></record>
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subjects Agriculture
Algorithms
Animal Genetics and Genomics
Antigens, CD - genetics
Biological and medical sciences
Biomedical and Life Sciences
Biomedicine
Cancer Research
Chromosome Mapping - methods
Chromosomes, Human, Pair 1 - genetics
Chromosomes, Human, Pair 17 - genetics
Chromosomes, Human, Pair 2 - genetics
Colleges & universities
CTLA-4 Antigen
DEAD-box RNA Helicases - genetics
Diabetes
Diabetes Mellitus, Type 1 - epidemiology
Diabetes Mellitus, Type 1 - genetics
Diabetes Mellitus, Type 1 - immunology
Diabetes. Impaired glucose tolerance
DNA - genetics
Endocrine pancreas. Apud cells (diseases)
Endocrinopathies
Environmental risk
Etiopathogenesis. Screening. Investigations. Target tissue resistance
Family
Female
Fundamental and applied biological sciences. Psychology
Gene Function
Genetic aspects
Genetic testing
Genetics of eukaryotes. Biological and molecular evolution
Genome-Wide Association Study
Genomics
Genotype
HLA Antigens - genetics
Human Genetics
Humans
Interferon-Induced Helicase, IFIH1
letter
Male
Medical sciences
Mental health
Meta-analysis
Meta-Analysis as Topic
Polymorphism, Single Nucleotide - genetics
Principal components analysis
Protein Tyrosine Phosphatase, Non-Receptor Type 22 - genetics
Quality control
Risk Assessment
Risk factors
Siblings
Single nucleotide polymorphisms
Studies
Type 1 diabetes
title Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes
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