Method for accurate fiber length determination from increment cores for large-scale population analyses in Norway spruce
Fiber (tracheid) length is an important trait targeted for genetic and silvicultural improvement. Such studies require large-scale non-destructive sampling, and accurate length determination. The standard procedure for non-destructive sampling is to collect increment cores, singularize their cells b...
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Veröffentlicht in: | Holzforschung 2016-09, Vol.70 (9), p.829-838 |
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creator | Chen, Zhi-Qiang Abramowicz, Konrad Raczkowski, Rafal Ganea, Stefana Wu, Harry X. Lundqvist, Sven-Olof Mörling, Tommy de Luna, Sara Sjöstedt García Gil, María Rosario Mellerowicz, Ewa J. |
description | Fiber (tracheid) length is an important trait targeted for genetic and silvicultural improvement. Such studies require large-scale non-destructive sampling, and accurate length determination. The standard procedure for non-destructive sampling is to collect increment cores, singularize their cells by maceration, measure them with optical analyzer and apply various corrections to suppress influence of non-fiber particles and cut fibers, as fibers are cut by the corer. The recently developed expectation-maximization method (EM) not only addresses the problem of non-fibers and cut fibers, but also corrects for the sampling bias. Here, the performance of the EM method has been evaluated by comparing it with length-weighing and squared length-weighing, both implemented in fiber analyzers, and with microscopy data for intact fibers, corrected for sampling bias, as the reference. This was done for 12-mm increment cores from 16 Norway spruce (
(L.) Karst) trees on fibers from rings 8–11 (counted from pith), representing juvenile wood of interest in breeding programs. The EM-estimates provided mean-fiber-lengths with bias of only +2.7% and low scatter. Length-weighing and length
-weighing gave biases of -7.3% and +9.3%, respectively, and larger scatter. The suggested EM approach constitutes a more accurate non-destructive method for fiber length (FL) determination, expected to be applicable also to other conifers. |
doi_str_mv | 10.1515/hf-2015-0138 |
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(L.) Karst) trees on fibers from rings 8–11 (counted from pith), representing juvenile wood of interest in breeding programs. The EM-estimates provided mean-fiber-lengths with bias of only +2.7% and low scatter. Length-weighing and length
-weighing gave biases of -7.3% and +9.3%, respectively, and larger scatter. The suggested EM approach constitutes a more accurate non-destructive method for fiber length (FL) determination, expected to be applicable also to other conifers.</description><identifier>ISSN: 0018-3830</identifier><identifier>ISSN: 1437-434X</identifier><identifier>EISSN: 1437-434X</identifier><identifier>DOI: 10.1515/hf-2015-0138</identifier><language>eng</language><publisher>Berlin: De Gruyter</publisher><subject>Analyzers ; Bias ; Breeding ; Conifers ; Cores ; Expectation - maximizations ; expectation-maximization ; Fiber length ; Fibers ; Forest Science ; Forestry ; Increment core ; Maceration ; Maximum principle ; Microscopy ; Nondestructive examination ; Nondestructive testing ; optical fiber analyzer ; Optical fibers ; Picea abies ; Pine trees ; Plants (botany) ; Sampling ; Scattering ; Silviculture ; Skogsvetenskap ; Tracheid length ; Weighing ; Wood</subject><ispartof>Holzforschung, 2016-09, Vol.70 (9), p.829-838</ispartof><rights>Copyright Walter de Gruyter GmbH Sep 2016</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c426t-541acc4ef56aee99cb5ad259c4b789e066b96d2aa9647e7d06b152750dfed4c13</citedby><cites>FETCH-LOGICAL-c426t-541acc4ef56aee99cb5ad259c4b789e066b96d2aa9647e7d06b152750dfed4c13</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.degruyter.com/document/doi/10.1515/hf-2015-0138/pdf$$EPDF$$P50$$Gwalterdegruyter$$H</linktopdf><linktohtml>$$Uhttps://www.degruyter.com/document/doi/10.1515/hf-2015-0138/html$$EHTML$$P50$$Gwalterdegruyter$$H</linktohtml><link.rule.ids>230,314,780,784,885,27924,27925,66754,68538</link.rule.ids><backlink>$$Uhttps://urn.kb.se/resolve?urn=urn:nbn:se:ri:diva-12612$$DView record from Swedish Publication Index$$Hfree_for_read</backlink><backlink>$$Uhttps://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-127630$$DView record from Swedish Publication Index$$Hfree_for_read</backlink><backlink>$$Uhttps://res.slu.se/id/publ/77120$$DView record from Swedish Publication Index$$Hfree_for_read</backlink></links><search><creatorcontrib>Chen, Zhi-Qiang</creatorcontrib><creatorcontrib>Abramowicz, Konrad</creatorcontrib><creatorcontrib>Raczkowski, Rafal</creatorcontrib><creatorcontrib>Ganea, Stefana</creatorcontrib><creatorcontrib>Wu, Harry X.</creatorcontrib><creatorcontrib>Lundqvist, Sven-Olof</creatorcontrib><creatorcontrib>Mörling, Tommy</creatorcontrib><creatorcontrib>de Luna, Sara Sjöstedt</creatorcontrib><creatorcontrib>García Gil, María Rosario</creatorcontrib><creatorcontrib>Mellerowicz, Ewa J.</creatorcontrib><creatorcontrib>Sveriges lantbruksuniversitet</creatorcontrib><title>Method for accurate fiber length determination from increment cores for large-scale population analyses in Norway spruce</title><title>Holzforschung</title><description>Fiber (tracheid) length is an important trait targeted for genetic and silvicultural improvement. Such studies require large-scale non-destructive sampling, and accurate length determination. The standard procedure for non-destructive sampling is to collect increment cores, singularize their cells by maceration, measure them with optical analyzer and apply various corrections to suppress influence of non-fiber particles and cut fibers, as fibers are cut by the corer. The recently developed expectation-maximization method (EM) not only addresses the problem of non-fibers and cut fibers, but also corrects for the sampling bias. Here, the performance of the EM method has been evaluated by comparing it with length-weighing and squared length-weighing, both implemented in fiber analyzers, and with microscopy data for intact fibers, corrected for sampling bias, as the reference. This was done for 12-mm increment cores from 16 Norway spruce (
(L.) Karst) trees on fibers from rings 8–11 (counted from pith), representing juvenile wood of interest in breeding programs. The EM-estimates provided mean-fiber-lengths with bias of only +2.7% and low scatter. Length-weighing and length
-weighing gave biases of -7.3% and +9.3%, respectively, and larger scatter. The suggested EM approach constitutes a more accurate non-destructive method for fiber length (FL) determination, expected to be applicable also to other conifers.</description><subject>Analyzers</subject><subject>Bias</subject><subject>Breeding</subject><subject>Conifers</subject><subject>Cores</subject><subject>Expectation - maximizations</subject><subject>expectation-maximization</subject><subject>Fiber length</subject><subject>Fibers</subject><subject>Forest Science</subject><subject>Forestry</subject><subject>Increment core</subject><subject>Maceration</subject><subject>Maximum principle</subject><subject>Microscopy</subject><subject>Nondestructive examination</subject><subject>Nondestructive testing</subject><subject>optical fiber analyzer</subject><subject>Optical fibers</subject><subject>Picea abies</subject><subject>Pine trees</subject><subject>Plants (botany)</subject><subject>Sampling</subject><subject>Scattering</subject><subject>Silviculture</subject><subject>Skogsvetenskap</subject><subject>Tracheid length</subject><subject>Weighing</subject><subject>Wood</subject><issn>0018-3830</issn><issn>1437-434X</issn><issn>1437-434X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><recordid>eNqF0U1v1DAQBuAIUYmlcOMHWOIIBjv-SrhV5VMq5QKIm-U4k91USRzGsbb773EahDigchpbemY0mrconnH2iiuuXh86WjKuKOOielDsuBSGSiF_PCx2jPGKikqwR8XjGG_yVzHBd8XtZ1gOoSVdQOK8T-gWIF3fAJIBpv1yIC0sgGM_uaUPE-kwjKSfPMII00J8QIh3zYPDPdDo3QBkDnMaNu8mN5xiNv1ErgMe3YnEGZOHJ8VZ54YIT3_X8-Lb-3dfLz_Sqy8fPl1eXFEvS71QJXleS0KntAOoa98o15aq9rIxVQ1M66bWbelcraUB0zLdcFUaxdoOWum5OC_oNjceYU6NnbEfHZ5scL2NQ2ocrsVGsMbwkt3r3_bfL2zAvU1jsrw0Wqz-xf899plrXmb9fNMzhp8J4mJvQsJ8o2h5xYyWgt3t8HJTHkOMCN2fqZzZNWl76OyatF2TzvzNxo9uyFm1sMd0yo-_Zv-jzbC6KmvxCzDZslY</recordid><startdate>20160901</startdate><enddate>20160901</enddate><creator>Chen, Zhi-Qiang</creator><creator>Abramowicz, Konrad</creator><creator>Raczkowski, Rafal</creator><creator>Ganea, Stefana</creator><creator>Wu, Harry X.</creator><creator>Lundqvist, Sven-Olof</creator><creator>Mörling, Tommy</creator><creator>de Luna, Sara Sjöstedt</creator><creator>García Gil, María Rosario</creator><creator>Mellerowicz, Ewa J.</creator><general>De Gruyter</general><general>Walter de Gruyter GmbH</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7QF</scope><scope>7QO</scope><scope>7QQ</scope><scope>7SC</scope><scope>7SE</scope><scope>7SP</scope><scope>7SR</scope><scope>7TA</scope><scope>7TB</scope><scope>7U5</scope><scope>8BQ</scope><scope>8FD</scope><scope>F28</scope><scope>FR3</scope><scope>H8D</scope><scope>JG9</scope><scope>JQ2</scope><scope>KR7</scope><scope>L7M</scope><scope>L~C</scope><scope>L~D</scope><scope>P64</scope><scope>RC3</scope><scope>ADTPV</scope><scope>AOWAS</scope><scope>D93</scope></search><sort><creationdate>20160901</creationdate><title>Method for accurate fiber length determination from increment cores for large-scale population analyses in Norway spruce</title><author>Chen, Zhi-Qiang ; Abramowicz, Konrad ; Raczkowski, Rafal ; Ganea, Stefana ; Wu, Harry X. ; Lundqvist, Sven-Olof ; Mörling, Tommy ; de Luna, Sara Sjöstedt ; García Gil, María Rosario ; Mellerowicz, Ewa J.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c426t-541acc4ef56aee99cb5ad259c4b789e066b96d2aa9647e7d06b152750dfed4c13</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Analyzers</topic><topic>Bias</topic><topic>Breeding</topic><topic>Conifers</topic><topic>Cores</topic><topic>Expectation - maximizations</topic><topic>expectation-maximization</topic><topic>Fiber length</topic><topic>Fibers</topic><topic>Forest Science</topic><topic>Forestry</topic><topic>Increment core</topic><topic>Maceration</topic><topic>Maximum principle</topic><topic>Microscopy</topic><topic>Nondestructive examination</topic><topic>Nondestructive testing</topic><topic>optical fiber analyzer</topic><topic>Optical fibers</topic><topic>Picea abies</topic><topic>Pine trees</topic><topic>Plants (botany)</topic><topic>Sampling</topic><topic>Scattering</topic><topic>Silviculture</topic><topic>Skogsvetenskap</topic><topic>Tracheid length</topic><topic>Weighing</topic><topic>Wood</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Chen, Zhi-Qiang</creatorcontrib><creatorcontrib>Abramowicz, Konrad</creatorcontrib><creatorcontrib>Raczkowski, Rafal</creatorcontrib><creatorcontrib>Ganea, Stefana</creatorcontrib><creatorcontrib>Wu, Harry X.</creatorcontrib><creatorcontrib>Lundqvist, Sven-Olof</creatorcontrib><creatorcontrib>Mörling, Tommy</creatorcontrib><creatorcontrib>de Luna, Sara Sjöstedt</creatorcontrib><creatorcontrib>García Gil, María Rosario</creatorcontrib><creatorcontrib>Mellerowicz, Ewa J.</creatorcontrib><creatorcontrib>Sveriges lantbruksuniversitet</creatorcontrib><collection>CrossRef</collection><collection>Aluminium Industry Abstracts</collection><collection>Biotechnology Research Abstracts</collection><collection>Ceramic Abstracts</collection><collection>Computer and Information Systems Abstracts</collection><collection>Corrosion Abstracts</collection><collection>Electronics & Communications Abstracts</collection><collection>Engineered Materials Abstracts</collection><collection>Materials Business File</collection><collection>Mechanical & Transportation Engineering Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>ANTE: Abstracts in New Technology & Engineering</collection><collection>Engineering Research Database</collection><collection>Aerospace Database</collection><collection>Materials Research Database</collection><collection>ProQuest Computer Science Collection</collection><collection>Civil Engineering Abstracts</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Computer and Information Systems Abstracts Academic</collection><collection>Computer and Information Systems Abstracts Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>SwePub</collection><collection>SwePub Articles</collection><collection>SWEPUB Umeå universitet</collection><jtitle>Holzforschung</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Chen, Zhi-Qiang</au><au>Abramowicz, Konrad</au><au>Raczkowski, Rafal</au><au>Ganea, Stefana</au><au>Wu, Harry X.</au><au>Lundqvist, Sven-Olof</au><au>Mörling, Tommy</au><au>de Luna, Sara Sjöstedt</au><au>García Gil, María Rosario</au><au>Mellerowicz, Ewa J.</au><aucorp>Sveriges lantbruksuniversitet</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Method for accurate fiber length determination from increment cores for large-scale population analyses in Norway spruce</atitle><jtitle>Holzforschung</jtitle><date>2016-09-01</date><risdate>2016</risdate><volume>70</volume><issue>9</issue><spage>829</spage><epage>838</epage><pages>829-838</pages><issn>0018-3830</issn><issn>1437-434X</issn><eissn>1437-434X</eissn><abstract>Fiber (tracheid) length is an important trait targeted for genetic and silvicultural improvement. Such studies require large-scale non-destructive sampling, and accurate length determination. The standard procedure for non-destructive sampling is to collect increment cores, singularize their cells by maceration, measure them with optical analyzer and apply various corrections to suppress influence of non-fiber particles and cut fibers, as fibers are cut by the corer. The recently developed expectation-maximization method (EM) not only addresses the problem of non-fibers and cut fibers, but also corrects for the sampling bias. Here, the performance of the EM method has been evaluated by comparing it with length-weighing and squared length-weighing, both implemented in fiber analyzers, and with microscopy data for intact fibers, corrected for sampling bias, as the reference. This was done for 12-mm increment cores from 16 Norway spruce (
(L.) Karst) trees on fibers from rings 8–11 (counted from pith), representing juvenile wood of interest in breeding programs. The EM-estimates provided mean-fiber-lengths with bias of only +2.7% and low scatter. Length-weighing and length
-weighing gave biases of -7.3% and +9.3%, respectively, and larger scatter. The suggested EM approach constitutes a more accurate non-destructive method for fiber length (FL) determination, expected to be applicable also to other conifers.</abstract><cop>Berlin</cop><pub>De Gruyter</pub><doi>10.1515/hf-2015-0138</doi><tpages>10</tpages></addata></record> |
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subjects | Analyzers Bias Breeding Conifers Cores Expectation - maximizations expectation-maximization Fiber length Fibers Forest Science Forestry Increment core Maceration Maximum principle Microscopy Nondestructive examination Nondestructive testing optical fiber analyzer Optical fibers Picea abies Pine trees Plants (botany) Sampling Scattering Silviculture Skogsvetenskap Tracheid length Weighing Wood |
title | Method for accurate fiber length determination from increment cores for large-scale population analyses in Norway spruce |
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