Assigning Brassica microsatellite markers to the nine C-genome chromosomes using Brassica rapa var. trilocularis–B. oleracea var. alboglabra monosomic alien addition lines
Brassica rapa var. trilocularis–B. oleracea var. alboglabra monosomic alien addition lines (MAALs) were used to assign simple sequence repeat (SSR) markers to the nine C-genome chromosomes. A total of 64 SSR markers specific to single C-chromosomes were identified. The number of specific markers for...
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| Veröffentlicht in: | Theoretical and applied genetics 2012-08, Vol.125 (3), p.455-466 |
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| creator | Geleta, Mulatu Heneen, Waheeb K Stoute, Andrew I Muttucumaru, Nira Scott, Roderick J King, Graham J Kurup, Smita Bryngelsson, Tomas |
| description | Brassica rapa var. trilocularis–B. oleracea var. alboglabra monosomic alien addition lines (MAALs) were used to assign simple sequence repeat (SSR) markers to the nine C-genome chromosomes. A total of 64 SSR markers specific to single C-chromosomes were identified. The number of specific markers for each chromosome varied from two (C3) to ten (C4, C7 and C9), where the designation of the chromosomes was according to Cheng et al. (Genome 38:313–319, 1995). Seventeen additional SSRs, which were duplicated on 2–5 C-chromosomes, were also identified. Using the SSR markers assigned to the previously developed eight MAALs and recently obtained aneuploid plants, a new Brassica rapa–B. oleracea var. alboglabra MAAL carrying the alien chromosome C7 was identified and developed. The application of reported genetically mapped SSR markers on the nine MAALs contributed to the determination of the correspondence between numerical C-genome cytological (Cheng et al. in Genome 38:313–319, 1995) and linkage group designations. This correspondence facilitates the integration of C-genome genetic information that has been generated based on the two designation systems and accordingly increases our knowledge about each chromosome. The present study is a significant contribution to genetic linkage analysis of SSR markers and important agronomic traits in B. oleracea and to the potential use of the MAALs in plant breeding. |
| doi_str_mv | 10.1007/s00122-012-1845-3 |
| format | Article |
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A total of 64 SSR markers specific to single C-chromosomes were identified. The number of specific markers for each chromosome varied from two (C3) to ten (C4, C7 and C9), where the designation of the chromosomes was according to Cheng et al. (Genome 38:313–319, 1995). Seventeen additional SSRs, which were duplicated on 2–5 C-chromosomes, were also identified. Using the SSR markers assigned to the previously developed eight MAALs and recently obtained aneuploid plants, a new Brassica rapa–B. oleracea var. alboglabra MAAL carrying the alien chromosome C7 was identified and developed. The application of reported genetically mapped SSR markers on the nine MAALs contributed to the determination of the correspondence between numerical C-genome cytological (Cheng et al. in Genome 38:313–319, 1995) and linkage group designations. This correspondence facilitates the integration of C-genome genetic information that has been generated based on the two designation systems and accordingly increases our knowledge about each chromosome. The present study is a significant contribution to genetic linkage analysis of SSR markers and important agronomic traits in B. oleracea and to the potential use of the MAALs in plant breeding.</description><identifier>ISSN: 0040-5752</identifier><identifier>ISSN: 1432-2242</identifier><identifier>EISSN: 1432-2242</identifier><identifier>DOI: 10.1007/s00122-012-1845-3</identifier><identifier>PMID: 22422193</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer-Verlag</publisher><subject>Agricultural Science ; Agriculture ; agronomic traits ; Aneuploidy ; Biochemistry ; Biomedical and Life Sciences ; Biotechnology ; Brassica ; Brassica - genetics ; Brassica rapa ; Brassica rapa subsp. trilocularis ; Chromosome Mapping - methods ; Chromosomes ; Chromosomes, Plant - genetics ; DNA, Plant ; Electrophoresis ; Genes ; Genetic aspects ; Genetic Linkage ; Genetic markers ; Genetics and Breeding ; Genetik och förädling ; genome ; Genome, Plant ; Genomes ; Jordbruksvetenskap ; Life Sciences ; Microsatellite Repeats ; Original Paper ; Physiological aspects ; Plant Biochemistry ; plant breeding ; Plant Breeding/Biotechnology ; Plant Genetics and Genomics ; Polymorphism, Genetic ; Satellite DNA</subject><ispartof>Theoretical and applied genetics, 2012-08, Vol.125 (3), p.455-466</ispartof><rights>Springer-Verlag 2012</rights><rights>COPYRIGHT 2012 Springer</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c658t-29b206aa5e8a5100523db5cdff95d5e803b82c1e16b3a84f4ec7688954a49be73</citedby><cites>FETCH-LOGICAL-c658t-29b206aa5e8a5100523db5cdff95d5e803b82c1e16b3a84f4ec7688954a49be73</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00122-012-1845-3$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00122-012-1845-3$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>230,314,780,784,885,27923,27924,41487,42556,51318</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22422193$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://res.slu.se/id/publ/42171$$DView record from Swedish Publication Index$$Hfree_for_read</backlink></links><search><creatorcontrib>Geleta, Mulatu</creatorcontrib><creatorcontrib>Heneen, Waheeb K</creatorcontrib><creatorcontrib>Stoute, Andrew I</creatorcontrib><creatorcontrib>Muttucumaru, Nira</creatorcontrib><creatorcontrib>Scott, Roderick J</creatorcontrib><creatorcontrib>King, Graham J</creatorcontrib><creatorcontrib>Kurup, Smita</creatorcontrib><creatorcontrib>Bryngelsson, Tomas</creatorcontrib><creatorcontrib>Sveriges lantbruksuniversitet</creatorcontrib><title>Assigning Brassica microsatellite markers to the nine C-genome chromosomes using Brassica rapa var. trilocularis–B. oleracea var. alboglabra monosomic alien addition lines</title><title>Theoretical and applied genetics</title><addtitle>Theor Appl Genet</addtitle><addtitle>Theor Appl Genet</addtitle><description>Brassica rapa var. trilocularis–B. oleracea var. alboglabra monosomic alien addition lines (MAALs) were used to assign simple sequence repeat (SSR) markers to the nine C-genome chromosomes. A total of 64 SSR markers specific to single C-chromosomes were identified. The number of specific markers for each chromosome varied from two (C3) to ten (C4, C7 and C9), where the designation of the chromosomes was according to Cheng et al. (Genome 38:313–319, 1995). Seventeen additional SSRs, which were duplicated on 2–5 C-chromosomes, were also identified. Using the SSR markers assigned to the previously developed eight MAALs and recently obtained aneuploid plants, a new Brassica rapa–B. oleracea var. alboglabra MAAL carrying the alien chromosome C7 was identified and developed. The application of reported genetically mapped SSR markers on the nine MAALs contributed to the determination of the correspondence between numerical C-genome cytological (Cheng et al. in Genome 38:313–319, 1995) and linkage group designations. This correspondence facilitates the integration of C-genome genetic information that has been generated based on the two designation systems and accordingly increases our knowledge about each chromosome. The present study is a significant contribution to genetic linkage analysis of SSR markers and important agronomic traits in B. oleracea and to the potential use of the MAALs in plant breeding.</description><subject>Agricultural Science</subject><subject>Agriculture</subject><subject>agronomic traits</subject><subject>Aneuploidy</subject><subject>Biochemistry</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Brassica</subject><subject>Brassica - genetics</subject><subject>Brassica rapa</subject><subject>Brassica rapa subsp. trilocularis</subject><subject>Chromosome Mapping - methods</subject><subject>Chromosomes</subject><subject>Chromosomes, Plant - genetics</subject><subject>DNA, Plant</subject><subject>Electrophoresis</subject><subject>Genes</subject><subject>Genetic aspects</subject><subject>Genetic Linkage</subject><subject>Genetic markers</subject><subject>Genetics and Breeding</subject><subject>Genetik och förädling</subject><subject>genome</subject><subject>Genome, Plant</subject><subject>Genomes</subject><subject>Jordbruksvetenskap</subject><subject>Life Sciences</subject><subject>Microsatellite Repeats</subject><subject>Original Paper</subject><subject>Physiological aspects</subject><subject>Plant Biochemistry</subject><subject>plant breeding</subject><subject>Plant Breeding/Biotechnology</subject><subject>Plant Genetics and Genomics</subject><subject>Polymorphism, Genetic</subject><subject>Satellite DNA</subject><issn>0040-5752</issn><issn>1432-2242</issn><issn>1432-2242</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqNkkuO1DAQhiMEYpqBA7ABS2xgkcaPOI9lT4vHSCMhMczaqiSVjIckbuyEx447cA4uxUmoKM1oGgFCkWyr_NVv1Z8_ih4KvhacZ88D50LKmJZY5ImO1a1oJRIlYykTeTtacZ7wWGdaHkX3QrjinEvN1d3oaL6XolCr6PsmBNsOdmjZiQc6V8B6W3kXYMSusyOyHvx79IGNjo2XyIhFto1bHFyPrLr0rneBjoFN4UDGww7YR_BrNnrbuWrqwNvw4-u3kzVzHXqocH8PXenaDkpPb7thVrMVFS0ODOrajtYNrKNnw_3oTgNdwAf7_Ti6ePni3fZ1fPbm1el2cxZXqc7HWBal5CmAxhw0OaWlqktd1U1T6JqKXJW5rASKtFSQJ02CVZbmeaETSIoSM3UcxYtu-IS7qTQ7b8mFL8aBNaGbSvDzZgKaRIpMEP904XfefZgwjKa3oSL_YEA3BSO4kiSfSf0fqEwzrpWcVZ_8hl65yQ80-EKJXBU3qBY6NHZo3EjWzqJmo1KlcqnUTK3_QNFXI5ntBmws1Q8anh00EDPi57GFKQRzev72kBULO-cmeGyuDRPczEk1S1INLWZOqlHU82g_3FT2WF93_IomAXL_D-hqaNHfnP7vqo-XpgacgZbyZi7OJRcJZV_pjGf_JESWpLn6CQ7qBns</recordid><startdate>20120801</startdate><enddate>20120801</enddate><creator>Geleta, Mulatu</creator><creator>Heneen, Waheeb K</creator><creator>Stoute, Andrew I</creator><creator>Muttucumaru, Nira</creator><creator>Scott, Roderick J</creator><creator>King, Graham J</creator><creator>Kurup, Smita</creator><creator>Bryngelsson, Tomas</creator><general>Springer-Verlag</general><general>Springer</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>ISR</scope><scope>3V.</scope><scope>7SS</scope><scope>7TK</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><scope>ADTPV</scope><scope>AOWAS</scope></search><sort><creationdate>20120801</creationdate><title>Assigning Brassica microsatellite markers to the nine C-genome chromosomes using Brassica rapa var. trilocularis–B. oleracea var. alboglabra monosomic alien addition lines</title><author>Geleta, Mulatu ; Heneen, Waheeb K ; Stoute, Andrew I ; Muttucumaru, Nira ; Scott, Roderick J ; King, Graham J ; Kurup, Smita ; Bryngelsson, Tomas</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c658t-29b206aa5e8a5100523db5cdff95d5e803b82c1e16b3a84f4ec7688954a49be73</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Agricultural Science</topic><topic>Agriculture</topic><topic>agronomic traits</topic><topic>Aneuploidy</topic><topic>Biochemistry</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Brassica</topic><topic>Brassica - genetics</topic><topic>Brassica rapa</topic><topic>Brassica rapa subsp. trilocularis</topic><topic>Chromosome Mapping - methods</topic><topic>Chromosomes</topic><topic>Chromosomes, Plant - genetics</topic><topic>DNA, Plant</topic><topic>Electrophoresis</topic><topic>Genes</topic><topic>Genetic aspects</topic><topic>Genetic Linkage</topic><topic>Genetic markers</topic><topic>Genetics and Breeding</topic><topic>Genetik och förädling</topic><topic>genome</topic><topic>Genome, Plant</topic><topic>Genomes</topic><topic>Jordbruksvetenskap</topic><topic>Life Sciences</topic><topic>Microsatellite Repeats</topic><topic>Original Paper</topic><topic>Physiological aspects</topic><topic>Plant Biochemistry</topic><topic>plant breeding</topic><topic>Plant Breeding/Biotechnology</topic><topic>Plant Genetics and Genomics</topic><topic>Polymorphism, Genetic</topic><topic>Satellite DNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Geleta, Mulatu</creatorcontrib><creatorcontrib>Heneen, Waheeb K</creatorcontrib><creatorcontrib>Stoute, Andrew I</creatorcontrib><creatorcontrib>Muttucumaru, Nira</creatorcontrib><creatorcontrib>Scott, Roderick J</creatorcontrib><creatorcontrib>King, Graham J</creatorcontrib><creatorcontrib>Kurup, Smita</creatorcontrib><creatorcontrib>Bryngelsson, Tomas</creatorcontrib><creatorcontrib>Sveriges lantbruksuniversitet</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Neurosciences Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>SwePub</collection><collection>SwePub Articles</collection><jtitle>Theoretical and applied genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Geleta, Mulatu</au><au>Heneen, Waheeb K</au><au>Stoute, Andrew I</au><au>Muttucumaru, Nira</au><au>Scott, Roderick J</au><au>King, Graham J</au><au>Kurup, Smita</au><au>Bryngelsson, Tomas</au><aucorp>Sveriges lantbruksuniversitet</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Assigning Brassica microsatellite markers to the nine C-genome chromosomes using Brassica rapa var. trilocularis–B. oleracea var. alboglabra monosomic alien addition lines</atitle><jtitle>Theoretical and applied genetics</jtitle><stitle>Theor Appl Genet</stitle><addtitle>Theor Appl Genet</addtitle><date>2012-08-01</date><risdate>2012</risdate><volume>125</volume><issue>3</issue><spage>455</spage><epage>466</epage><pages>455-466</pages><issn>0040-5752</issn><issn>1432-2242</issn><eissn>1432-2242</eissn><abstract>Brassica rapa var. trilocularis–B. oleracea var. alboglabra monosomic alien addition lines (MAALs) were used to assign simple sequence repeat (SSR) markers to the nine C-genome chromosomes. A total of 64 SSR markers specific to single C-chromosomes were identified. The number of specific markers for each chromosome varied from two (C3) to ten (C4, C7 and C9), where the designation of the chromosomes was according to Cheng et al. (Genome 38:313–319, 1995). Seventeen additional SSRs, which were duplicated on 2–5 C-chromosomes, were also identified. Using the SSR markers assigned to the previously developed eight MAALs and recently obtained aneuploid plants, a new Brassica rapa–B. oleracea var. alboglabra MAAL carrying the alien chromosome C7 was identified and developed. The application of reported genetically mapped SSR markers on the nine MAALs contributed to the determination of the correspondence between numerical C-genome cytological (Cheng et al. in Genome 38:313–319, 1995) and linkage group designations. This correspondence facilitates the integration of C-genome genetic information that has been generated based on the two designation systems and accordingly increases our knowledge about each chromosome. The present study is a significant contribution to genetic linkage analysis of SSR markers and important agronomic traits in B. oleracea and to the potential use of the MAALs in plant breeding.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer-Verlag</pub><pmid>22422193</pmid><doi>10.1007/s00122-012-1845-3</doi><tpages>12</tpages></addata></record> |
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| ispartof | Theoretical and applied genetics, 2012-08, Vol.125 (3), p.455-466 |
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| language | eng |
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| source | MEDLINE; SpringerLink Journals - AutoHoldings |
| subjects | Agricultural Science Agriculture agronomic traits Aneuploidy Biochemistry Biomedical and Life Sciences Biotechnology Brassica Brassica - genetics Brassica rapa Brassica rapa subsp. trilocularis Chromosome Mapping - methods Chromosomes Chromosomes, Plant - genetics DNA, Plant Electrophoresis Genes Genetic aspects Genetic Linkage Genetic markers Genetics and Breeding Genetik och förädling genome Genome, Plant Genomes Jordbruksvetenskap Life Sciences Microsatellite Repeats Original Paper Physiological aspects Plant Biochemistry plant breeding Plant Breeding/Biotechnology Plant Genetics and Genomics Polymorphism, Genetic Satellite DNA |
| title | Assigning Brassica microsatellite markers to the nine C-genome chromosomes using Brassica rapa var. trilocularis–B. oleracea var. alboglabra monosomic alien addition lines |
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