Projecting results of zoned multi-environment trials to new locations using environmental covariates with random coefficient models: accuracy and precision

Key message We propose the utilisation of environmental covariates in random coefficient models to predict the genotype performances in new locations. Multi-environment trials (MET) are conducted to assess the performance of a set of genotypes in a target population of environments. From a grower’s...

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Veröffentlicht in:Theoretical and applied genetics 2021-05, Vol.134 (5), p.1513-1530
Hauptverfasser: Buntaran, Harimurti, Forkman, Johannes, Piepho, Hans-Peter
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creator Buntaran, Harimurti
Forkman, Johannes
Piepho, Hans-Peter
description Key message We propose the utilisation of environmental covariates in random coefficient models to predict the genotype performances in new locations. Multi-environment trials (MET) are conducted to assess the performance of a set of genotypes in a target population of environments. From a grower’s perspective, MET results must provide high accuracy and precision for predictions of genotype performance in new locations, i.e. the grower’s locations, which hardly ever coincide with the locations at which the trials were conducted. Linear mixed modelling can provide predictions for new locations. Moreover, the precision of the predictions is of primary concern and should be assessed. Besides, the precision can be improved when auxiliary information is available to characterize the targeted locations. Thus, in this study, we demonstrate the benefit of using environmental information (covariates) for predicting genotype performance in some new locations for Swedish winter wheat official trials. Swedish MET locations can be stratified into zones, allowing borrowing information between zones when best linear unbiased prediction (BLUP) is used. To account for correlations between zones, as well as for intercepts and slopes for the regression on covariates, we fitted random coefficient (RC) models. The results showed that the RC model with appropriate covariate scaling and model for covariate terms improved the precision of predictions of genotypic performance for new locations. The prediction accuracy of the RC model was competitive compared to the model without covariates. The RC model reduced the standard errors of predictions for individual genotypes and standard errors of predictions of genotype differences in new locations by 30–38% and 12–40%, respectively.
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source MEDLINE; SWEPUB Freely available online; SpringerLink Journals - AutoHoldings
subjects Accuracy
Agricultural estimating and reporting
Agricultural land
Agricultural research
Agriculture
Biochemistry
Biomedical and Life Sciences
Biotechnology
Environmental aspects
Environmental Sciences
Gene-Environment Interaction
Genetic aspects
Genetics, Population
Genome, Plant
Genotype
Genotype & phenotype
Genotypes
Life Sciences
Methods
Miljövetenskap
Models, Genetic
Original
Original Article
Phenotype
Plant Biochemistry
Plant breeding
Plant Breeding/Biotechnology
Plant Genetics and Genomics
Predictions
Regression analysis
Statistical models
Triticum - genetics
Triticum - growth & development
title Projecting results of zoned multi-environment trials to new locations using environmental covariates with random coefficient models: accuracy and precision
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