Diversity and communities of culturable endophytic fungi from different tree peonies (geoherbs and non-geoherbs), and their biosynthetic potential analysis
To know more about the potential roles of endophytic fungi in the formation mechanism of Daodi medicinal material, diversity and communities of culturable endophytic fungi in three types of tree peonies were investigated. Endophytic fungi of three types of tree peonies were isolated and identified....
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| Veröffentlicht in: | Brazilian journal of microbiology 2018-11, Vol.49 (S1), p.47-58 |
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| creator | Yang, Guodong Li, Peng Meng, Lifen Xv, Keyi Dong, Faming Qiu, Yan He, Lei Lin, Lin |
| description | To know more about the potential roles of endophytic fungi in the formation mechanism of Daodi medicinal material, diversity and communities of culturable endophytic fungi in three types of tree peonies were investigated. Endophytic fungi of three types of tree peonies were isolated and identified. The diversity was analyzed. Bayesian trees constructed by MrBayes 3.2.6 after phylogenetic analysis of the ITS sequences. The endophytic fungi potential for synthesis of natural products was assessed by means of detecting NRPS and PKS gene sequences. In total, 364 endophytic fungi isolates representing 26 genera were recovered from Paeonia ostii ‘Feng Dan’, Paeonia ostii ‘Luoyang Feng Dan’, and Paeonia suffruticosa ‘Luoyang Hong’. More culturable endophytic fungi appeared in P. suffruticosa ‘Luoyang Hong’ (206) compared with P. ostii ‘Feng Dan’ (60) and P. ostii ‘Luoyang Feng Dan’ (98). The fungal community of P. ostii ‘Feng Dan’ had the highest richness and diversity. PKSs and NRPS detection rates of endophytic fungi from P. ostii ‘Feng Dan’ are both the highest among the three types of tree peonies. Results indicate that endophytic fungus is an important factor of Daodi Cortex Moutan forming, and endophytic fungi in peony are related to genuineness of Cortex Moutan. |
| doi_str_mv | 10.1016/j.bjm.2018.06.006 |
| format | Article |
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Endophytic fungi of three types of tree peonies were isolated and identified. The diversity was analyzed. Bayesian trees constructed by MrBayes 3.2.6 after phylogenetic analysis of the ITS sequences. The endophytic fungi potential for synthesis of natural products was assessed by means of detecting NRPS and PKS gene sequences. In total, 364 endophytic fungi isolates representing 26 genera were recovered from Paeonia ostii ‘Feng Dan’, Paeonia ostii ‘Luoyang Feng Dan’, and Paeonia suffruticosa ‘Luoyang Hong’. More culturable endophytic fungi appeared in P. suffruticosa ‘Luoyang Hong’ (206) compared with P. ostii ‘Feng Dan’ (60) and P. ostii ‘Luoyang Feng Dan’ (98). The fungal community of P. ostii ‘Feng Dan’ had the highest richness and diversity. PKSs and NRPS detection rates of endophytic fungi from P. ostii ‘Feng Dan’ are both the highest among the three types of tree peonies. Results indicate that endophytic fungus is an important factor of Daodi Cortex Moutan forming, and endophytic fungi in peony are related to genuineness of Cortex Moutan.</description><identifier>ISSN: 1517-8382</identifier><identifier>ISSN: 1678-4405</identifier><identifier>EISSN: 1678-4405</identifier><identifier>DOI: 10.1016/j.bjm.2018.06.006</identifier><identifier>PMID: 30166266</identifier><language>eng</language><publisher>Brazil: Elsevier Editora Ltda</publisher><subject>Bayesian analysis ; Biodiversity ; Biological Products - metabolism ; biosynthesis ; Communities ; cortex ; Cortex Moutan ; Daodi medicinal material ; Drugs, Chinese Herbal - metabolism ; Endophytes ; Endophytes - classification ; Endophytes - genetics ; Endophytes - growth & development ; Endophytes - isolation & purification ; Endophytic fungi ; fungal communities ; Fungi ; Fungi - classification ; Fungi - genetics ; Fungi - growth & development ; Fungi - isolation & purification ; Gene sequencing ; internal transcribed spacers ; MICROBIOLOGY ; Natural products ; NRPS ; Paeonia ; Paeonia - classification ; Paeonia - growth & development ; Paeonia - metabolism ; Paeonia - microbiology ; Paeonia suffruticosa ; Phylogeny ; PKS ; Plant diversity ; Research Paper ; Trees</subject><ispartof>Brazilian journal of microbiology, 2018-11, Vol.49 (S1), p.47-58</ispartof><rights>2018 Sociedade Brasileira de Microbiologia</rights><rights>Copyright © 2018 Sociedade Brasileira de Microbiologia. Published by Elsevier Editora Ltda. All rights reserved.</rights><rights>2018. This work is published under https://creativecommons.org/licenses/by-nc-nd/4.0/deed.en (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2018 Sociedade Brasileira de Microbiologia. Published by Elsevier Editora Ltda. 2018 Sociedade Brasileira de Microbiologia</rights><rights>This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c551t-36207eb33a781e5a0db85030d5cbc40a76259e091c07ca7621c429eefcd7da613</citedby><cites>FETCH-LOGICAL-c551t-36207eb33a781e5a0db85030d5cbc40a76259e091c07ca7621c429eefcd7da613</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6328841/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6328841/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30166266$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Yang, Guodong</creatorcontrib><creatorcontrib>Li, Peng</creatorcontrib><creatorcontrib>Meng, Lifen</creatorcontrib><creatorcontrib>Xv, Keyi</creatorcontrib><creatorcontrib>Dong, Faming</creatorcontrib><creatorcontrib>Qiu, Yan</creatorcontrib><creatorcontrib>He, Lei</creatorcontrib><creatorcontrib>Lin, Lin</creatorcontrib><title>Diversity and communities of culturable endophytic fungi from different tree peonies (geoherbs and non-geoherbs), and their biosynthetic potential analysis</title><title>Brazilian journal of microbiology</title><addtitle>Braz J Microbiol</addtitle><description>To know more about the potential roles of endophytic fungi in the formation mechanism of Daodi medicinal material, diversity and communities of culturable endophytic fungi in three types of tree peonies were investigated. Endophytic fungi of three types of tree peonies were isolated and identified. The diversity was analyzed. Bayesian trees constructed by MrBayes 3.2.6 after phylogenetic analysis of the ITS sequences. The endophytic fungi potential for synthesis of natural products was assessed by means of detecting NRPS and PKS gene sequences. In total, 364 endophytic fungi isolates representing 26 genera were recovered from Paeonia ostii ‘Feng Dan’, Paeonia ostii ‘Luoyang Feng Dan’, and Paeonia suffruticosa ‘Luoyang Hong’. More culturable endophytic fungi appeared in P. suffruticosa ‘Luoyang Hong’ (206) compared with P. ostii ‘Feng Dan’ (60) and P. ostii ‘Luoyang Feng Dan’ (98). The fungal community of P. ostii ‘Feng Dan’ had the highest richness and diversity. PKSs and NRPS detection rates of endophytic fungi from P. ostii ‘Feng Dan’ are both the highest among the three types of tree peonies. Results indicate that endophytic fungus is an important factor of Daodi Cortex Moutan forming, and endophytic fungi in peony are related to genuineness of Cortex Moutan.</description><subject>Bayesian analysis</subject><subject>Biodiversity</subject><subject>Biological Products - metabolism</subject><subject>biosynthesis</subject><subject>Communities</subject><subject>cortex</subject><subject>Cortex Moutan</subject><subject>Daodi medicinal material</subject><subject>Drugs, Chinese Herbal - metabolism</subject><subject>Endophytes</subject><subject>Endophytes - classification</subject><subject>Endophytes - genetics</subject><subject>Endophytes - growth & development</subject><subject>Endophytes - isolation & purification</subject><subject>Endophytic fungi</subject><subject>fungal communities</subject><subject>Fungi</subject><subject>Fungi - classification</subject><subject>Fungi - genetics</subject><subject>Fungi - growth & development</subject><subject>Fungi - isolation & purification</subject><subject>Gene sequencing</subject><subject>internal transcribed spacers</subject><subject>MICROBIOLOGY</subject><subject>Natural products</subject><subject>NRPS</subject><subject>Paeonia</subject><subject>Paeonia - classification</subject><subject>Paeonia - growth & development</subject><subject>Paeonia - metabolism</subject><subject>Paeonia - microbiology</subject><subject>Paeonia suffruticosa</subject><subject>Phylogeny</subject><subject>PKS</subject><subject>Plant diversity</subject><subject>Research Paper</subject><subject>Trees</subject><issn>1517-8382</issn><issn>1678-4405</issn><issn>1678-4405</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNqFUk2LFDEQbURx19Uf4EUavKxgt5V0J51BEGT9hAUP6jmk09UzGbqTMUkPzG_xz5rs7A7qQQ8hlcp7L1WVVxRPCdQECH-1rfvtXFMgogZeA_B7xTnhnajaFtj9FDPSVaIR9Kx4FMIWgDJo6cPirElsTjk_L36-M3v0wcRDqexQajfPizXRYCjdWOpliotX_YQl2sHtNododDkudm3K0bu5HMw4okcby-gRyx06m6mXa3Qb9H24EbXOVneJFy9vUnGDxpe9ceFgU5xVdy4mHaOmBFDTIZjwuHgwqingk9v9ovj-4f23q0_V9ZePn6_eXleaMRKrhlPosG8a1QmCTMHQCwYNDEz3ugXVccpWCCuiodP5RHRLV4ijHrpBcdJcFPVRN2iDk5Nbt_hUQpBf8wBlHmCeMQCwtNouEd4cCbuln3HQqW6vJrnzZlb-IJ0y8s8bazZy7faSN1SINr94eSvg3Y8FQ5SzCRqnSVl0S5CUNEQwDqv2_1BYiY4zwjP0-V_QUyeUCEFalmyRUOSI0t6F4HE81U1AZlvJrUy2krllCVwmWyXOs98bPjHufJQAr48ATP-0N-hlnqXVOBiPOsrBmX_I_wINl96F</recordid><startdate>20181101</startdate><enddate>20181101</enddate><creator>Yang, Guodong</creator><creator>Li, Peng</creator><creator>Meng, Lifen</creator><creator>Xv, Keyi</creator><creator>Dong, Faming</creator><creator>Qiu, Yan</creator><creator>He, Lei</creator><creator>Lin, Lin</creator><general>Elsevier Editora Ltda</general><general>Springer Nature B.V</general><general>Elsevier</general><general>Sociedade Brasileira de Microbiologia</general><scope>6I.</scope><scope>AAFTH</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>88I</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>CLZPN</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>PATMY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PYCSY</scope><scope>Q9U</scope><scope>7X8</scope><scope>7S9</scope><scope>L.6</scope><scope>5PM</scope><scope>GPN</scope></search><sort><creationdate>20181101</creationdate><title>Diversity and communities of culturable endophytic fungi from different tree peonies (geoherbs and non-geoherbs), and their biosynthetic potential analysis</title><author>Yang, Guodong ; Li, Peng ; Meng, Lifen ; Xv, Keyi ; Dong, Faming ; Qiu, Yan ; He, Lei ; Lin, Lin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c551t-36207eb33a781e5a0db85030d5cbc40a76259e091c07ca7621c429eefcd7da613</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Bayesian analysis</topic><topic>Biodiversity</topic><topic>Biological Products - metabolism</topic><topic>biosynthesis</topic><topic>Communities</topic><topic>cortex</topic><topic>Cortex Moutan</topic><topic>Daodi medicinal material</topic><topic>Drugs, Chinese Herbal - metabolism</topic><topic>Endophytes</topic><topic>Endophytes - classification</topic><topic>Endophytes - genetics</topic><topic>Endophytes - growth & development</topic><topic>Endophytes - isolation & purification</topic><topic>Endophytic fungi</topic><topic>fungal communities</topic><topic>Fungi</topic><topic>Fungi - classification</topic><topic>Fungi - genetics</topic><topic>Fungi - growth & development</topic><topic>Fungi - isolation & purification</topic><topic>Gene sequencing</topic><topic>internal transcribed spacers</topic><topic>MICROBIOLOGY</topic><topic>Natural products</topic><topic>NRPS</topic><topic>Paeonia</topic><topic>Paeonia - classification</topic><topic>Paeonia - growth & development</topic><topic>Paeonia - metabolism</topic><topic>Paeonia - microbiology</topic><topic>Paeonia suffruticosa</topic><topic>Phylogeny</topic><topic>PKS</topic><topic>Plant diversity</topic><topic>Research Paper</topic><topic>Trees</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Yang, Guodong</creatorcontrib><creatorcontrib>Li, Peng</creatorcontrib><creatorcontrib>Meng, Lifen</creatorcontrib><creatorcontrib>Xv, Keyi</creatorcontrib><creatorcontrib>Dong, Faming</creatorcontrib><creatorcontrib>Qiu, Yan</creatorcontrib><creatorcontrib>He, Lei</creatorcontrib><creatorcontrib>Lin, Lin</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>Latin America & Iberia Database</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Environmental Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Environmental Science Collection</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>SciELO</collection><jtitle>Brazilian journal of microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Yang, Guodong</au><au>Li, Peng</au><au>Meng, Lifen</au><au>Xv, Keyi</au><au>Dong, Faming</au><au>Qiu, Yan</au><au>He, Lei</au><au>Lin, Lin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Diversity and communities of culturable endophytic fungi from different tree peonies (geoherbs and non-geoherbs), and their biosynthetic potential analysis</atitle><jtitle>Brazilian journal of microbiology</jtitle><addtitle>Braz J Microbiol</addtitle><date>2018-11-01</date><risdate>2018</risdate><volume>49</volume><issue>S1</issue><spage>47</spage><epage>58</epage><pages>47-58</pages><issn>1517-8382</issn><issn>1678-4405</issn><eissn>1678-4405</eissn><abstract>To know more about the potential roles of endophytic fungi in the formation mechanism of Daodi medicinal material, diversity and communities of culturable endophytic fungi in three types of tree peonies were investigated. Endophytic fungi of three types of tree peonies were isolated and identified. The diversity was analyzed. Bayesian trees constructed by MrBayes 3.2.6 after phylogenetic analysis of the ITS sequences. The endophytic fungi potential for synthesis of natural products was assessed by means of detecting NRPS and PKS gene sequences. In total, 364 endophytic fungi isolates representing 26 genera were recovered from Paeonia ostii ‘Feng Dan’, Paeonia ostii ‘Luoyang Feng Dan’, and Paeonia suffruticosa ‘Luoyang Hong’. More culturable endophytic fungi appeared in P. suffruticosa ‘Luoyang Hong’ (206) compared with P. ostii ‘Feng Dan’ (60) and P. ostii ‘Luoyang Feng Dan’ (98). The fungal community of P. ostii ‘Feng Dan’ had the highest richness and diversity. PKSs and NRPS detection rates of endophytic fungi from P. ostii ‘Feng Dan’ are both the highest among the three types of tree peonies. Results indicate that endophytic fungus is an important factor of Daodi Cortex Moutan forming, and endophytic fungi in peony are related to genuineness of Cortex Moutan.</abstract><cop>Brazil</cop><pub>Elsevier Editora Ltda</pub><pmid>30166266</pmid><doi>10.1016/j.bjm.2018.06.006</doi><tpages>12</tpages><oa>free_for_read</oa></addata></record> |
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| source | MEDLINE; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central; Alma/SFX Local Collection |
| subjects | Bayesian analysis Biodiversity Biological Products - metabolism biosynthesis Communities cortex Cortex Moutan Daodi medicinal material Drugs, Chinese Herbal - metabolism Endophytes Endophytes - classification Endophytes - genetics Endophytes - growth & development Endophytes - isolation & purification Endophytic fungi fungal communities Fungi Fungi - classification Fungi - genetics Fungi - growth & development Fungi - isolation & purification Gene sequencing internal transcribed spacers MICROBIOLOGY Natural products NRPS Paeonia Paeonia - classification Paeonia - growth & development Paeonia - metabolism Paeonia - microbiology Paeonia suffruticosa Phylogeny PKS Plant diversity Research Paper Trees |
| title | Diversity and communities of culturable endophytic fungi from different tree peonies (geoherbs and non-geoherbs), and their biosynthetic potential analysis |
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