Targeting the heme protein hemoglobin by (−)-epigallocatechin gallate and the study of polyphenol-protein association using multi-spectroscopic and computational methods

In this work, the interaction of a bioactive tea polyphenol (−)-epigallocatechin gallate (EGCG) with bovine hemoglobin (BHb) along with its anti-oxidative behavior and the anti-glycation property have been explored using multi-spectroscopic and computational techniques. The binding affinity for EGCG...

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Veröffentlicht in:Physical chemistry chemical physics : PCCP 2020-01, Vol.22 (4), p.2212-2228
Hauptverfasser: Das, Sourav, Sarmah, Sharat, Hazarika, Zaved, Rohman, Mostofa Ataur, Sarkhel, Pallavi, Jha, Anupam Nath, Singha Roy, Atanu
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container_title Physical chemistry chemical physics : PCCP
container_volume 22
creator Das, Sourav
Sarmah, Sharat
Hazarika, Zaved
Rohman, Mostofa Ataur
Sarkhel, Pallavi
Jha, Anupam Nath
Singha Roy, Atanu
description In this work, the interaction of a bioactive tea polyphenol (−)-epigallocatechin gallate (EGCG) with bovine hemoglobin (BHb) along with its anti-oxidative behavior and the anti-glycation property have been explored using multi-spectroscopic and computational techniques. The binding affinity for EGCG towards BHb was observed to be moderate in nature with an order of 10 4 M −1 , and the fluorescence quenching mechanism was characterized by an unusual static quenching mechanism. The binding constant ( K b ) showed a continuous enhancement with temperature from 3.468 ± 0.380 × 10 4 M −1 at 288 K to 6.017 ± 0.601 × 10 4 M −1 at 310 K. The fluorescence emission measurements along with molecular docking studies indicated that EGCG binds near the most dominant fluorophore of BHb (β 2 -Trp37, at the interface of α 1 and β 2 chains) within the pocket formed by the α 1 , α 2 and β 2 chains. The sign and magnitude of the thermodynamic parameters, changes in enthalpy (Δ H = +17.004 ± 1.007 kJ mol −1 ) and in entropy (Δ S = +146.213 ± 2.390 J K −1 mol −1 ), indicate that hydrophobic forces play a major role in stabilizing the BHb-EGCG complex. The micro-environment around the EGCG binding site showed an increase in hydrophobicity upon ligand binding. The binding of EGCG with BHb leads to a decrease in the α-helical content, whereas that of the β-sheet increased. FTIR studies also indicated that the secondary structure of BHb changed upon binding with EGCG, along with providing further support for the presence of hydrophobic forces in the complexation process. Molecular docking studies indicated that EGCG binds within the cavity of α 1 , α 2 , and β 2 chains surrounded by residues such as α 1 - Lys99, α 1 -Thr134, α 1 -Thr137, α 1 -Tyr140, α 2 -Lys127 and β 2 -Trp37. Molecular dynamics simulation studies indicated that EGCG conferred additional stability to BHb. Furthermore, moving away from the binding studies, EGCG was found to prevent the glyoxal (GO)-mediated glycation process of BHb, and it was also found to act as a potent antioxidant against the photo-oxidative damage of BHb. (−)-Epigallocatechin gallate binds to BHb and exhibits anti-glycating as well as antioxidant behaviors towards glycation and photo-oxidation of BHb.
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The binding affinity for EGCG towards BHb was observed to be moderate in nature with an order of 10 4 M −1 , and the fluorescence quenching mechanism was characterized by an unusual static quenching mechanism. The binding constant ( K b ) showed a continuous enhancement with temperature from 3.468 ± 0.380 × 10 4 M −1 at 288 K to 6.017 ± 0.601 × 10 4 M −1 at 310 K. The fluorescence emission measurements along with molecular docking studies indicated that EGCG binds near the most dominant fluorophore of BHb (β 2 -Trp37, at the interface of α 1 and β 2 chains) within the pocket formed by the α 1 , α 2 and β 2 chains. The sign and magnitude of the thermodynamic parameters, changes in enthalpy (Δ H = +17.004 ± 1.007 kJ mol −1 ) and in entropy (Δ S = +146.213 ± 2.390 J K −1 mol −1 ), indicate that hydrophobic forces play a major role in stabilizing the BHb-EGCG complex. The micro-environment around the EGCG binding site showed an increase in hydrophobicity upon ligand binding. The binding of EGCG with BHb leads to a decrease in the α-helical content, whereas that of the β-sheet increased. FTIR studies also indicated that the secondary structure of BHb changed upon binding with EGCG, along with providing further support for the presence of hydrophobic forces in the complexation process. Molecular docking studies indicated that EGCG binds within the cavity of α 1 , α 2 , and β 2 chains surrounded by residues such as α 1 - Lys99, α 1 -Thr134, α 1 -Thr137, α 1 -Tyr140, α 2 -Lys127 and β 2 -Trp37. Molecular dynamics simulation studies indicated that EGCG conferred additional stability to BHb. Furthermore, moving away from the binding studies, EGCG was found to prevent the glyoxal (GO)-mediated glycation process of BHb, and it was also found to act as a potent antioxidant against the photo-oxidative damage of BHb. 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The binding affinity for EGCG towards BHb was observed to be moderate in nature with an order of 10 4 M −1 , and the fluorescence quenching mechanism was characterized by an unusual static quenching mechanism. The binding constant ( K b ) showed a continuous enhancement with temperature from 3.468 ± 0.380 × 10 4 M −1 at 288 K to 6.017 ± 0.601 × 10 4 M −1 at 310 K. The fluorescence emission measurements along with molecular docking studies indicated that EGCG binds near the most dominant fluorophore of BHb (β 2 -Trp37, at the interface of α 1 and β 2 chains) within the pocket formed by the α 1 , α 2 and β 2 chains. The sign and magnitude of the thermodynamic parameters, changes in enthalpy (Δ H = +17.004 ± 1.007 kJ mol −1 ) and in entropy (Δ S = +146.213 ± 2.390 J K −1 mol −1 ), indicate that hydrophobic forces play a major role in stabilizing the BHb-EGCG complex. The micro-environment around the EGCG binding site showed an increase in hydrophobicity upon ligand binding. The binding of EGCG with BHb leads to a decrease in the α-helical content, whereas that of the β-sheet increased. FTIR studies also indicated that the secondary structure of BHb changed upon binding with EGCG, along with providing further support for the presence of hydrophobic forces in the complexation process. Molecular docking studies indicated that EGCG binds within the cavity of α 1 , α 2 , and β 2 chains surrounded by residues such as α 1 - Lys99, α 1 -Thr134, α 1 -Thr137, α 1 -Tyr140, α 2 -Lys127 and β 2 -Trp37. Molecular dynamics simulation studies indicated that EGCG conferred additional stability to BHb. Furthermore, moving away from the binding studies, EGCG was found to prevent the glyoxal (GO)-mediated glycation process of BHb, and it was also found to act as a potent antioxidant against the photo-oxidative damage of BHb. 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The binding affinity for EGCG towards BHb was observed to be moderate in nature with an order of 10 4 M −1 , and the fluorescence quenching mechanism was characterized by an unusual static quenching mechanism. The binding constant ( K b ) showed a continuous enhancement with temperature from 3.468 ± 0.380 × 10 4 M −1 at 288 K to 6.017 ± 0.601 × 10 4 M −1 at 310 K. The fluorescence emission measurements along with molecular docking studies indicated that EGCG binds near the most dominant fluorophore of BHb (β 2 -Trp37, at the interface of α 1 and β 2 chains) within the pocket formed by the α 1 , α 2 and β 2 chains. The sign and magnitude of the thermodynamic parameters, changes in enthalpy (Δ H = +17.004 ± 1.007 kJ mol −1 ) and in entropy (Δ S = +146.213 ± 2.390 J K −1 mol −1 ), indicate that hydrophobic forces play a major role in stabilizing the BHb-EGCG complex. The micro-environment around the EGCG binding site showed an increase in hydrophobicity upon ligand binding. The binding of EGCG with BHb leads to a decrease in the α-helical content, whereas that of the β-sheet increased. FTIR studies also indicated that the secondary structure of BHb changed upon binding with EGCG, along with providing further support for the presence of hydrophobic forces in the complexation process. Molecular docking studies indicated that EGCG binds within the cavity of α 1 , α 2 , and β 2 chains surrounded by residues such as α 1 - Lys99, α 1 -Thr134, α 1 -Thr137, α 1 -Tyr140, α 2 -Lys127 and β 2 -Trp37. Molecular dynamics simulation studies indicated that EGCG conferred additional stability to BHb. Furthermore, moving away from the binding studies, EGCG was found to prevent the glyoxal (GO)-mediated glycation process of BHb, and it was also found to act as a potent antioxidant against the photo-oxidative damage of BHb. (−)-Epigallocatechin gallate binds to BHb and exhibits anti-glycating as well as antioxidant behaviors towards glycation and photo-oxidation of BHb.</abstract><cop>England</cop><pub>Royal Society of Chemistry</pub><pmid>31913367</pmid><doi>10.1039/c9cp05301h</doi><tpages>17</tpages><orcidid>https://orcid.org/0000-0002-0255-0976</orcidid><orcidid>https://orcid.org/0000-0003-1902-403X</orcidid></addata></record>
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source MEDLINE; Royal Society Of Chemistry Journals 2008-; Alma/SFX Local Collection
subjects Animals
Antioxidants
Binding sites
Catechin - analogs & derivatives
Catechin - chemistry
Cattle
Chains
Computer simulation
Dynamic stability
Emission analysis
Enthalpy
Fluorescence
Hemoglobin
Hemoglobins - chemistry
Hemoglobins - metabolism
Hydrophobic and Hydrophilic Interactions
Hydrophobicity
Molecular docking
Molecular Docking Simulation
Molecular dynamics
Polyphenols - chemistry
Polyphenols - metabolism
Protein Binding
Proteins
Quenching
Spectrum Analysis
title Targeting the heme protein hemoglobin by (−)-epigallocatechin gallate and the study of polyphenol-protein association using multi-spectroscopic and computational methods
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