Extension of the AMBER force-field for the study of large nitroxides in condensed phases: an ab initio parameterizationElectronic supplementary information (ESI) available: The atom types, charges and intra-molecular parameters for extending the AMBER force-field to nitroxides are freely available in the 'nitroxide.lib' and 'frcmod.nitroxide.dat' files. The RESP charges of 3-carboxy-PROXYL, 4-oxo-TEMPO, 4-carboxy-TEMPO, TANINE and TANOL as well as the structural features and the EPR parameters o

The popular AMBER force-field has been extended to provide an accurate description of large and flexible nitroxide free-radicals in condensed phases. New atom types have been included, and relevant parameters have been fitted based on geometries, vibrational frequencies and potential energy surfaces computed at the DFT level for several different classes of nitroxides, both in vacuo and in different solvents. The resulting computational tool is capable of providing reliable structures, vibrational frequencies, relative energies and spectroscopic observables for large and flexible nitroxide systems, including those typically used as spin labels. The modified force field has been employed in the context of an integrated approach, based on classical molecular dynamics and discrete-continuum solvent models, for the investigation of environmental and short-time dynamic effects on the hyperfine and gyromagnetic tensors of PROXYL, TEMPO and INDCO spin probes. The computed magnetic parameters are in very good agreement with the available experimental values, and the procedure allows for an unbiased evaluation of the role of different effects in tuning the overall EPR observables. The AMBER force field has been extended to study large and flexible nitroxide systems.