SCREENING OF POTENTIAL CORE GENES IN PERIPHERAL BLOOD OF ADULT PATIENTS WITH SEPSIS BASED ON TRANSCRIPTION REGULATION FUNCTION
Objective: The aim of the study is to screen transcription factor genes related to the prognosis of adult patients with sepsis. Methods: Twenty-three patients with sepsis and 10 healthy individuals admitted for RNA-seq. Differential factors were enriched by four transcription factor databases, and s...
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Veröffentlicht in: | Shock (Augusta, Ga.) Ga.), 2023-03, Vol.59 (3), p.385-392 |
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creator | Liu, Jitao Li, Shaolan Xiong, Dianhui Shang, Wenjun Zhan, Tao Zhu, Xingxin He, Sheng Wang, Yu Zhang, Qian Hu, Yingchun |
description | Objective: The aim of the study is to screen transcription factor genes related to the prognosis of adult patients with sepsis. Methods: Twenty-three patients with sepsis and 10 healthy individuals admitted for RNA-seq. Differential factors were enriched by four transcription factor databases, and survival analysis was adopted for core factors. Then, target genes were submitted to STRING to constitute the protein-protein interaction network. Single-cell technology was used to localize cell lines. Finally, a transcription-target gene regulation network was constituted. Results: A total of 4,224 differentially expressed genes were obtained between sepsis and normal control groups. Protein-protein interaction results showed that FOXO3, NFKB1, SPI1, STAT5A, and PPARA were located in the center of the network. Target genes were related to cytokine-mediated signaling pathway and transcription regulator activity, etc. SPI1 was mainly located in monocyte cell lines, while FOXO3, PPARA, SP1, STAT3, and USF1 were expressed in monocyte cell lines, NK-T cell lines, and B cell lines. Compared with those in the control group, FOXO3, SP1, SPI1, STAT3, and USF1 were highly expressed in the sepsis group, while PPARA had low expression. Conclusions: Transcription factors, such as FOXO3, PPARA, SP1, SPI1, STAT3, and USF1, are correlated with the prognosis of sepsis patients and thus may have a potential research value. Clinical Trial Registration: The clinical trial registration number is ChiCTR1900021261. |
doi_str_mv | 10.1097/SHK.0000000000002072 |
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Methods: Twenty-three patients with sepsis and 10 healthy individuals admitted for RNA-seq. Differential factors were enriched by four transcription factor databases, and survival analysis was adopted for core factors. Then, target genes were submitted to STRING to constitute the protein-protein interaction network. Single-cell technology was used to localize cell lines. Finally, a transcription-target gene regulation network was constituted. Results: A total of 4,224 differentially expressed genes were obtained between sepsis and normal control groups. Protein-protein interaction results showed that FOXO3, NFKB1, SPI1, STAT5A, and PPARA were located in the center of the network. Target genes were related to cytokine-mediated signaling pathway and transcription regulator activity, etc. SPI1 was mainly located in monocyte cell lines, while FOXO3, PPARA, SP1, STAT3, and USF1 were expressed in monocyte cell lines, NK-T cell lines, and B cell lines. Compared with those in the control group, FOXO3, SP1, SPI1, STAT3, and USF1 were highly expressed in the sepsis group, while PPARA had low expression. Conclusions: Transcription factors, such as FOXO3, PPARA, SP1, SPI1, STAT3, and USF1, are correlated with the prognosis of sepsis patients and thus may have a potential research value. Clinical Trial Registration: The clinical trial registration number is ChiCTR1900021261.</description><identifier>ISSN: 1073-2322</identifier><identifier>EISSN: 1540-0514</identifier><identifier>DOI: 10.1097/SHK.0000000000002072</identifier><identifier>PMID: 36567548</identifier><language>eng</language><publisher>United States: Lippincott Williams & Wilkins</publisher><subject>Adult ; Clinical Science Aspects ; Computational Biology - methods ; Gene Expression Profiling ; Gene Expression Regulation ; Gene Regulatory Networks ; Humans ; Prognosis ; Protein Interaction Maps - genetics ; Sepsis - metabolism</subject><ispartof>Shock (Augusta, Ga.), 2023-03, Vol.59 (3), p.385-392</ispartof><rights>Lippincott Williams & Wilkins</rights><rights>Copyright © 2023 The Author(s). Published by Wolters Kluwer Health, Inc. on behalf of the Shock Society.</rights><rights>Copyright © 2023 The Author(s). Published by Wolters Kluwer Health, Inc. on behalf of the Shock Society. 2023 Wolters Kluwer Health, Inc. All rights reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4539-7f13d58e836fabf0bb14b9bad2ffe1090c2284a638f1eac42daac26dcddf9dd33</citedby><cites>FETCH-LOGICAL-c4539-7f13d58e836fabf0bb14b9bad2ffe1090c2284a638f1eac42daac26dcddf9dd33</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf><![CDATA[$$Uhttp://ovidsp.ovid.com/ovidweb.cgi?T=JS&CSC=Y&NEWS=N&PAGE=fulltext&PDF=y&D=ovft&AN=00024382-202303000-00009$$EPDF$$P50$$Gwolterskluwer$$H]]></linktopdf><linktohtml>$$Uhttp://ovidsp.ovid.com/ovidweb.cgi?T=JS&NEWS=n&CSC=Y&PAGE=fulltext&D=ovft&AN=00024382-202303000-00009$$EHTML$$P50$$Gwolterskluwer$$H</linktohtml><link.rule.ids>230,314,780,784,885,4609,27924,27925,64666,65461</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36567548$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Liu, Jitao</creatorcontrib><creatorcontrib>Li, Shaolan</creatorcontrib><creatorcontrib>Xiong, Dianhui</creatorcontrib><creatorcontrib>Shang, Wenjun</creatorcontrib><creatorcontrib>Zhan, Tao</creatorcontrib><creatorcontrib>Zhu, Xingxin</creatorcontrib><creatorcontrib>He, Sheng</creatorcontrib><creatorcontrib>Wang, Yu</creatorcontrib><creatorcontrib>Zhang, Qian</creatorcontrib><creatorcontrib>Hu, Yingchun</creatorcontrib><title>SCREENING OF POTENTIAL CORE GENES IN PERIPHERAL BLOOD OF ADULT PATIENTS WITH SEPSIS BASED ON TRANSCRIPTION REGULATION FUNCTION</title><title>Shock (Augusta, Ga.)</title><addtitle>Shock</addtitle><description>Objective: The aim of the study is to screen transcription factor genes related to the prognosis of adult patients with sepsis. Methods: Twenty-three patients with sepsis and 10 healthy individuals admitted for RNA-seq. Differential factors were enriched by four transcription factor databases, and survival analysis was adopted for core factors. Then, target genes were submitted to STRING to constitute the protein-protein interaction network. Single-cell technology was used to localize cell lines. Finally, a transcription-target gene regulation network was constituted. Results: A total of 4,224 differentially expressed genes were obtained between sepsis and normal control groups. Protein-protein interaction results showed that FOXO3, NFKB1, SPI1, STAT5A, and PPARA were located in the center of the network. Target genes were related to cytokine-mediated signaling pathway and transcription regulator activity, etc. SPI1 was mainly located in monocyte cell lines, while FOXO3, PPARA, SP1, STAT3, and USF1 were expressed in monocyte cell lines, NK-T cell lines, and B cell lines. Compared with those in the control group, FOXO3, SP1, SPI1, STAT3, and USF1 were highly expressed in the sepsis group, while PPARA had low expression. Conclusions: Transcription factors, such as FOXO3, PPARA, SP1, SPI1, STAT3, and USF1, are correlated with the prognosis of sepsis patients and thus may have a potential research value. Clinical Trial Registration: The clinical trial registration number is ChiCTR1900021261.</description><subject>Adult</subject><subject>Clinical Science Aspects</subject><subject>Computational Biology - methods</subject><subject>Gene Expression Profiling</subject><subject>Gene Expression Regulation</subject><subject>Gene Regulatory Networks</subject><subject>Humans</subject><subject>Prognosis</subject><subject>Protein Interaction Maps - genetics</subject><subject>Sepsis - metabolism</subject><issn>1073-2322</issn><issn>1540-0514</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpdUU1v1DAUtBCIloV_gJCPXNI6tvN1QUpT765FlERJVhwtJ7bZheymjXepuPDb69BSCr74Pb2ZeU8zALz30YWPkuiyWX--QM8eRhF-Ac79gCIPBT596WoUEQ8TjM_AG2u_OQwlSfQanJEwCKOAxufgV5PVjBW8WMFyCauyZUXL0xxmZc3gihWsgbyAFat5tWa1G1zlZXk9Y9PrTd7CKm25ozTwC2_XsGFVwxt4lTbMYQrY1mnhFvCq5a6r2WqTp7_L5abI5uIteGXkYPW7x38BNkvWZmsvL1c8S3OvpwFJvMj4RAWxjkloZGdQ1_m0SzqpsDHauYF6jGMqQxIbX8ueYiVlj0PVK2USpQhZgE8Pujenbq9Vrw_HSQ7iZtrt5fRTjHIn_p0cdlvxdfwhkiSJQmfbAnx8FJjG25O2R7Hf2V4Pgzzo8WQFjoKYOEcxdlD6AO2n0dpJm6c1PhJzdMJFJ_6PztE-PD_xifQnq7-6d-Nw1JP9Ppzu9CS2Wg7H7aznzoyxhxEmiLjWm6UTcg9qspvj</recordid><startdate>20230301</startdate><enddate>20230301</enddate><creator>Liu, Jitao</creator><creator>Li, Shaolan</creator><creator>Xiong, Dianhui</creator><creator>Shang, Wenjun</creator><creator>Zhan, Tao</creator><creator>Zhu, Xingxin</creator><creator>He, Sheng</creator><creator>Wang, Yu</creator><creator>Zhang, Qian</creator><creator>Hu, Yingchun</creator><general>Lippincott Williams & Wilkins</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20230301</creationdate><title>SCREENING OF POTENTIAL CORE GENES IN PERIPHERAL BLOOD OF ADULT PATIENTS WITH SEPSIS BASED ON TRANSCRIPTION REGULATION FUNCTION</title><author>Liu, Jitao ; Li, Shaolan ; Xiong, Dianhui ; Shang, Wenjun ; Zhan, Tao ; Zhu, Xingxin ; He, Sheng ; Wang, Yu ; Zhang, Qian ; Hu, Yingchun</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4539-7f13d58e836fabf0bb14b9bad2ffe1090c2284a638f1eac42daac26dcddf9dd33</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Adult</topic><topic>Clinical Science Aspects</topic><topic>Computational Biology - methods</topic><topic>Gene Expression Profiling</topic><topic>Gene Expression Regulation</topic><topic>Gene Regulatory Networks</topic><topic>Humans</topic><topic>Prognosis</topic><topic>Protein Interaction Maps - genetics</topic><topic>Sepsis - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Liu, Jitao</creatorcontrib><creatorcontrib>Li, Shaolan</creatorcontrib><creatorcontrib>Xiong, Dianhui</creatorcontrib><creatorcontrib>Shang, Wenjun</creatorcontrib><creatorcontrib>Zhan, Tao</creatorcontrib><creatorcontrib>Zhu, Xingxin</creatorcontrib><creatorcontrib>He, Sheng</creatorcontrib><creatorcontrib>Wang, Yu</creatorcontrib><creatorcontrib>Zhang, Qian</creatorcontrib><creatorcontrib>Hu, Yingchun</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Shock (Augusta, Ga.)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Liu, Jitao</au><au>Li, Shaolan</au><au>Xiong, Dianhui</au><au>Shang, Wenjun</au><au>Zhan, Tao</au><au>Zhu, Xingxin</au><au>He, Sheng</au><au>Wang, Yu</au><au>Zhang, Qian</au><au>Hu, Yingchun</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>SCREENING OF POTENTIAL CORE GENES IN PERIPHERAL BLOOD OF ADULT PATIENTS WITH SEPSIS BASED ON TRANSCRIPTION REGULATION FUNCTION</atitle><jtitle>Shock (Augusta, Ga.)</jtitle><addtitle>Shock</addtitle><date>2023-03-01</date><risdate>2023</risdate><volume>59</volume><issue>3</issue><spage>385</spage><epage>392</epage><pages>385-392</pages><issn>1073-2322</issn><eissn>1540-0514</eissn><abstract>Objective: The aim of the study is to screen transcription factor genes related to the prognosis of adult patients with sepsis. Methods: Twenty-three patients with sepsis and 10 healthy individuals admitted for RNA-seq. Differential factors were enriched by four transcription factor databases, and survival analysis was adopted for core factors. Then, target genes were submitted to STRING to constitute the protein-protein interaction network. Single-cell technology was used to localize cell lines. Finally, a transcription-target gene regulation network was constituted. Results: A total of 4,224 differentially expressed genes were obtained between sepsis and normal control groups. Protein-protein interaction results showed that FOXO3, NFKB1, SPI1, STAT5A, and PPARA were located in the center of the network. Target genes were related to cytokine-mediated signaling pathway and transcription regulator activity, etc. SPI1 was mainly located in monocyte cell lines, while FOXO3, PPARA, SP1, STAT3, and USF1 were expressed in monocyte cell lines, NK-T cell lines, and B cell lines. Compared with those in the control group, FOXO3, SP1, SPI1, STAT3, and USF1 were highly expressed in the sepsis group, while PPARA had low expression. Conclusions: Transcription factors, such as FOXO3, PPARA, SP1, SPI1, STAT3, and USF1, are correlated with the prognosis of sepsis patients and thus may have a potential research value. Clinical Trial Registration: The clinical trial registration number is ChiCTR1900021261.</abstract><cop>United States</cop><pub>Lippincott Williams & Wilkins</pub><pmid>36567548</pmid><doi>10.1097/SHK.0000000000002072</doi><tpages>8</tpages><oa>free_for_read</oa></addata></record> |
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source | MEDLINE; Journals@Ovid LWW Legacy Archive; EZB-FREE-00999 freely available EZB journals |
subjects | Adult Clinical Science Aspects Computational Biology - methods Gene Expression Profiling Gene Expression Regulation Gene Regulatory Networks Humans Prognosis Protein Interaction Maps - genetics Sepsis - metabolism |
title | SCREENING OF POTENTIAL CORE GENES IN PERIPHERAL BLOOD OF ADULT PATIENTS WITH SEPSIS BASED ON TRANSCRIPTION REGULATION FUNCTION |
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