Genome-Wide Analysis of Specific PfR2R3-MYB Genes Related to Paulownia Witches' Broom
Paulownia witches' broom (PaWB), caused by phytoplasmas, is the most devastating infectious disease of Paulownia. transcription factors (TF) have been reported to be involved in the plant's response to infections caused by these pathogens, but a comprehensive study of the genes in Paulowni...
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| Veröffentlicht in: | Genes 2022-12, Vol.14 (1), p.7 |
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| creator | Zhao, Xiaogai Li, Bingbing Zhai, Xiaoqiao Liu, Haifang Deng, Minjie Fan, Guoqiang |
| description | Paulownia witches' broom (PaWB), caused by phytoplasmas, is the most devastating infectious disease of Paulownia.
transcription factors (TF) have been reported to be involved in the plant's response to infections caused by these pathogens, but a comprehensive study of the
genes in Paulownia has not been reported. In this study, we identified 138
genes distributed on 20 chromosomes of
. These genes were classified into 27 subfamilies based on their gene structures and phylogenetic relationships, which indicated that they have various evolutionary relationships and have undergone rich segmental replication events. We determined the expression patterns of the 138
genes of
by analyzing the RNA sequencing data and found that
was significantly up-regulated in
in response to phytoplasma infections.
was cloned and overexpressed in
. The results show that its overexpression induced branching symptoms. Subsequently, the subcellular localization results showed that
was located in the nucleus. Yeast two-hybrid and bimolecular fluorescence complementation experiments showed that
interacted with
. The analysis of the
gene showed that it not only played an important role in plant branching, but also might participate in the biosynthesis of photosystem elements. Our results will provide a foundation for future studies of the
TF family in Paulownia and other plants. |
| doi_str_mv | 10.3390/genes14010007 |
| format | Article |
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transcription factors (TF) have been reported to be involved in the plant's response to infections caused by these pathogens, but a comprehensive study of the
genes in Paulownia has not been reported. In this study, we identified 138
genes distributed on 20 chromosomes of
. These genes were classified into 27 subfamilies based on their gene structures and phylogenetic relationships, which indicated that they have various evolutionary relationships and have undergone rich segmental replication events. We determined the expression patterns of the 138
genes of
by analyzing the RNA sequencing data and found that
was significantly up-regulated in
in response to phytoplasma infections.
was cloned and overexpressed in
. The results show that its overexpression induced branching symptoms. Subsequently, the subcellular localization results showed that
was located in the nucleus. Yeast two-hybrid and bimolecular fluorescence complementation experiments showed that
interacted with
. The analysis of the
gene showed that it not only played an important role in plant branching, but also might participate in the biosynthesis of photosystem elements. Our results will provide a foundation for future studies of the
TF family in Paulownia and other plants.</description><identifier>ISSN: 2073-4425</identifier><identifier>EISSN: 2073-4425</identifier><identifier>DOI: 10.3390/genes14010007</identifier><identifier>PMID: 36672749</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Cell cycle ; Chromosomes ; Complementation ; Cytisus - genetics ; Gene expression ; Genes, myb ; Genomes ; Infectious diseases ; Localization ; Magnoliopsida - genetics ; Paulownia ; Photosystem ; Phylogenetics ; Phylogeny ; Phytoplasma ; Proteins ; RNA ; Roles ; Software ; Transcription factors ; Witches' broom</subject><ispartof>Genes, 2022-12, Vol.14 (1), p.7</ispartof><rights>2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2022 by the authors. 2022</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c415t-6a0857906511b5c0c4290ae8b0ca6d3bd0baead70b67c0f0e0ffdd4b224dc6fe3</citedby><cites>FETCH-LOGICAL-c415t-6a0857906511b5c0c4290ae8b0ca6d3bd0baead70b67c0f0e0ffdd4b224dc6fe3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9858720/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9858720/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36672749$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhao, Xiaogai</creatorcontrib><creatorcontrib>Li, Bingbing</creatorcontrib><creatorcontrib>Zhai, Xiaoqiao</creatorcontrib><creatorcontrib>Liu, Haifang</creatorcontrib><creatorcontrib>Deng, Minjie</creatorcontrib><creatorcontrib>Fan, Guoqiang</creatorcontrib><title>Genome-Wide Analysis of Specific PfR2R3-MYB Genes Related to Paulownia Witches' Broom</title><title>Genes</title><addtitle>Genes (Basel)</addtitle><description>Paulownia witches' broom (PaWB), caused by phytoplasmas, is the most devastating infectious disease of Paulownia.
transcription factors (TF) have been reported to be involved in the plant's response to infections caused by these pathogens, but a comprehensive study of the
genes in Paulownia has not been reported. In this study, we identified 138
genes distributed on 20 chromosomes of
. These genes were classified into 27 subfamilies based on their gene structures and phylogenetic relationships, which indicated that they have various evolutionary relationships and have undergone rich segmental replication events. We determined the expression patterns of the 138
genes of
by analyzing the RNA sequencing data and found that
was significantly up-regulated in
in response to phytoplasma infections.
was cloned and overexpressed in
. The results show that its overexpression induced branching symptoms. Subsequently, the subcellular localization results showed that
was located in the nucleus. Yeast two-hybrid and bimolecular fluorescence complementation experiments showed that
interacted with
. The analysis of the
gene showed that it not only played an important role in plant branching, but also might participate in the biosynthesis of photosystem elements. Our results will provide a foundation for future studies of the
TF family in Paulownia and other plants.</description><subject>Cell cycle</subject><subject>Chromosomes</subject><subject>Complementation</subject><subject>Cytisus - genetics</subject><subject>Gene expression</subject><subject>Genes, myb</subject><subject>Genomes</subject><subject>Infectious diseases</subject><subject>Localization</subject><subject>Magnoliopsida - genetics</subject><subject>Paulownia</subject><subject>Photosystem</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Phytoplasma</subject><subject>Proteins</subject><subject>RNA</subject><subject>Roles</subject><subject>Software</subject><subject>Transcription factors</subject><subject>Witches' broom</subject><issn>2073-4425</issn><issn>2073-4425</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNpd0c8vxjAYB_BGCIKjqzRx4DKetd26XSQILwkhLyJOTdc-pbKtr3Uj_nvzMzi1ST_5tk-_hKynsMN5Cbv32GJMBaQAIOfIMgPJEyFYNv9rv0TWYnwcBQhgANkiWeJ5LpkU5TK5mWAbGkxuvUW63-r6NfpIg6NXMzTeeUMv3ZRNeXJ-d0An79fRKda6R0v7QC_1UIeX1mt663vzgHGLHnQhNKtkwek64trXukJujo-uD0-Ss4vJ6eH-WWJEmvVJrqHIZAl5lqZVZsAIVoLGogKjc8srC5VGbSVUuTTgAME5a0XFmLAmd8hXyN5n7myoGrQG277TtZp1vtHdqwraq78nrX9Q9-FZlUVWSAZjwPZXQBeeBoy9anw0WNe6xTBExWReMFYI4CPd_Ecfw9CNP_ahJEt5weSokk9luhBjh-7nMSmo987Un85Gv_F7gh_93RB_A8g3kgA</recordid><startdate>20221220</startdate><enddate>20221220</enddate><creator>Zhao, Xiaogai</creator><creator>Li, Bingbing</creator><creator>Zhai, Xiaoqiao</creator><creator>Liu, Haifang</creator><creator>Deng, Minjie</creator><creator>Fan, Guoqiang</creator><general>MDPI AG</general><general>MDPI</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M7P</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20221220</creationdate><title>Genome-Wide Analysis of Specific PfR2R3-MYB Genes Related to Paulownia Witches' Broom</title><author>Zhao, Xiaogai ; Li, Bingbing ; Zhai, Xiaoqiao ; Liu, Haifang ; Deng, Minjie ; Fan, Guoqiang</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c415t-6a0857906511b5c0c4290ae8b0ca6d3bd0baead70b67c0f0e0ffdd4b224dc6fe3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Cell cycle</topic><topic>Chromosomes</topic><topic>Complementation</topic><topic>Cytisus - genetics</topic><topic>Gene expression</topic><topic>Genes, myb</topic><topic>Genomes</topic><topic>Infectious diseases</topic><topic>Localization</topic><topic>Magnoliopsida - genetics</topic><topic>Paulownia</topic><topic>Photosystem</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Phytoplasma</topic><topic>Proteins</topic><topic>RNA</topic><topic>Roles</topic><topic>Software</topic><topic>Transcription factors</topic><topic>Witches' broom</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhao, Xiaogai</creatorcontrib><creatorcontrib>Li, Bingbing</creatorcontrib><creatorcontrib>Zhai, Xiaoqiao</creatorcontrib><creatorcontrib>Liu, Haifang</creatorcontrib><creatorcontrib>Deng, Minjie</creatorcontrib><creatorcontrib>Fan, Guoqiang</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Access via ProQuest (Open Access)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Genes</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhao, Xiaogai</au><au>Li, Bingbing</au><au>Zhai, Xiaoqiao</au><au>Liu, Haifang</au><au>Deng, Minjie</au><au>Fan, Guoqiang</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome-Wide Analysis of Specific PfR2R3-MYB Genes Related to Paulownia Witches' Broom</atitle><jtitle>Genes</jtitle><addtitle>Genes (Basel)</addtitle><date>2022-12-20</date><risdate>2022</risdate><volume>14</volume><issue>1</issue><spage>7</spage><pages>7-</pages><issn>2073-4425</issn><eissn>2073-4425</eissn><abstract>Paulownia witches' broom (PaWB), caused by phytoplasmas, is the most devastating infectious disease of Paulownia.
transcription factors (TF) have been reported to be involved in the plant's response to infections caused by these pathogens, but a comprehensive study of the
genes in Paulownia has not been reported. In this study, we identified 138
genes distributed on 20 chromosomes of
. These genes were classified into 27 subfamilies based on their gene structures and phylogenetic relationships, which indicated that they have various evolutionary relationships and have undergone rich segmental replication events. We determined the expression patterns of the 138
genes of
by analyzing the RNA sequencing data and found that
was significantly up-regulated in
in response to phytoplasma infections.
was cloned and overexpressed in
. The results show that its overexpression induced branching symptoms. Subsequently, the subcellular localization results showed that
was located in the nucleus. Yeast two-hybrid and bimolecular fluorescence complementation experiments showed that
interacted with
. The analysis of the
gene showed that it not only played an important role in plant branching, but also might participate in the biosynthesis of photosystem elements. Our results will provide a foundation for future studies of the
TF family in Paulownia and other plants.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>36672749</pmid><doi>10.3390/genes14010007</doi><oa>free_for_read</oa></addata></record> |
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| source | MDPI - Multidisciplinary Digital Publishing Institute; MEDLINE; PubMed Central; EZB Electronic Journals Library; PubMed Central Open Access |
| subjects | Cell cycle Chromosomes Complementation Cytisus - genetics Gene expression Genes, myb Genomes Infectious diseases Localization Magnoliopsida - genetics Paulownia Photosystem Phylogenetics Phylogeny Phytoplasma Proteins RNA Roles Software Transcription factors Witches' broom |
| title | Genome-Wide Analysis of Specific PfR2R3-MYB Genes Related to Paulownia Witches' Broom |
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