Genome-Wide Identification of the CER Gene Family and Significant Features in Climate Adaptation of Castanea mollissima
The plant cuticle is the outermost layer of the aerial organs and an important barrier against biotic and abiotic stresses. The climate varies greatly between the north and south of China, with large differences in temperature and humidity, but Chinese chestnut is found in both regions. This study i...
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creator | Zhao, Shuqing Nie, Xinghua Liu, Xueqing Wang, Biyao Liu, Song Qin, Ling Xing, Yu |
description | The plant cuticle is the outermost layer of the aerial organs and an important barrier against biotic and abiotic stresses. The climate varies greatly between the north and south of China, with large differences in temperature and humidity, but Chinese chestnut is found in both regions. This study investigated the relationship between the wax layer of chestnut leaves and environmental adaptation. Firstly, semi-thin sections were used to verify that there is a significant difference in the thickness of the epicuticular wax layer between wild chestnut leaves in northwest and southeast China. Secondly, a whole-genome selective sweep was used to resequence wild chestnut samples from two typical regional populations, and significant genetic divergence was identified between the two populations in the
,
and
genes. Thirty-four
genes were identified in the whole chestnut genome, and a series of predictive analyses were performed on the identified
genes. The expression patterns of
genes were classified into three trends-upregulation, upregulation followed by downregulation and continuous downregulation-when chestnut seedlings were treated with drought stress. Analysis of cultivars from two resource beds in Beijing and Liyang showed that the wax layer of the northern variety was thicker than that of the southern variety. For the Y-2 (
genome sequencing material) cultivar, there were significant differences in the expression of
,
and
between the southern variety and the northern one-year-grafted variety. Therefore, this study suggests that the
family genes play a role in environmental adaptations in chestnut, laying the foundation for further exploration of
genes. It also demonstrates the importance of studying the adaptation of Chinese chestnut wax biosynthesis to the southern and northern environments. |
doi_str_mv | 10.3390/ijms232416202 |
format | Article |
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,
and
genes. Thirty-four
genes were identified in the whole chestnut genome, and a series of predictive analyses were performed on the identified
genes. The expression patterns of
genes were classified into three trends-upregulation, upregulation followed by downregulation and continuous downregulation-when chestnut seedlings were treated with drought stress. Analysis of cultivars from two resource beds in Beijing and Liyang showed that the wax layer of the northern variety was thicker than that of the southern variety. For the Y-2 (
genome sequencing material) cultivar, there were significant differences in the expression of
,
and
between the southern variety and the northern one-year-grafted variety. Therefore, this study suggests that the
family genes play a role in environmental adaptations in chestnut, laying the foundation for further exploration of
genes. It also demonstrates the importance of studying the adaptation of Chinese chestnut wax biosynthesis to the southern and northern environments.</description><identifier>ISSN: 1422-0067</identifier><identifier>ISSN: 1661-6596</identifier><identifier>EISSN: 1422-0067</identifier><identifier>DOI: 10.3390/ijms232416202</identifier><identifier>PMID: 36555843</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Adaptation ; Alcohol ; Base Sequence ; Biosynthesis ; Castanea mollissima ; Chestnut ; China ; Climate ; Climate adaptation ; Cultivars ; Cuticular wax ; Divergence ; Drought ; Enzymes ; Epicuticular wax ; Fatty acids ; Fruits ; Gene expression ; Genes ; Genomes ; Keratin ; Leaves ; Lipids ; Pachira insignis ; Plant cuticle ; Plant Leaves - genetics ; Population genetics ; Populations ; Precipitation ; Proteins ; Seedlings ; Waxes</subject><ispartof>International journal of molecular sciences, 2022-12, Vol.23 (24), p.16202</ispartof><rights>2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2022 by the authors. 2022</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c345t-d3e4fa8de890e435c0fa6179eb4ab3bc43c6fbb973543a685af5720560813e283</citedby><cites>FETCH-LOGICAL-c345t-d3e4fa8de890e435c0fa6179eb4ab3bc43c6fbb973543a685af5720560813e283</cites><orcidid>0000-0002-7359-4714 ; 0000-0002-1647-9736</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9787725/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9787725/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36555843$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhao, Shuqing</creatorcontrib><creatorcontrib>Nie, Xinghua</creatorcontrib><creatorcontrib>Liu, Xueqing</creatorcontrib><creatorcontrib>Wang, Biyao</creatorcontrib><creatorcontrib>Liu, Song</creatorcontrib><creatorcontrib>Qin, Ling</creatorcontrib><creatorcontrib>Xing, Yu</creatorcontrib><title>Genome-Wide Identification of the CER Gene Family and Significant Features in Climate Adaptation of Castanea mollissima</title><title>International journal of molecular sciences</title><addtitle>Int J Mol Sci</addtitle><description>The plant cuticle is the outermost layer of the aerial organs and an important barrier against biotic and abiotic stresses. The climate varies greatly between the north and south of China, with large differences in temperature and humidity, but Chinese chestnut is found in both regions. This study investigated the relationship between the wax layer of chestnut leaves and environmental adaptation. Firstly, semi-thin sections were used to verify that there is a significant difference in the thickness of the epicuticular wax layer between wild chestnut leaves in northwest and southeast China. Secondly, a whole-genome selective sweep was used to resequence wild chestnut samples from two typical regional populations, and significant genetic divergence was identified between the two populations in the
,
and
genes. Thirty-four
genes were identified in the whole chestnut genome, and a series of predictive analyses were performed on the identified
genes. The expression patterns of
genes were classified into three trends-upregulation, upregulation followed by downregulation and continuous downregulation-when chestnut seedlings were treated with drought stress. Analysis of cultivars from two resource beds in Beijing and Liyang showed that the wax layer of the northern variety was thicker than that of the southern variety. For the Y-2 (
genome sequencing material) cultivar, there were significant differences in the expression of
,
and
between the southern variety and the northern one-year-grafted variety. Therefore, this study suggests that the
family genes play a role in environmental adaptations in chestnut, laying the foundation for further exploration of
genes. It also demonstrates the importance of studying the adaptation of Chinese chestnut wax biosynthesis to the southern and northern environments.</description><subject>Adaptation</subject><subject>Alcohol</subject><subject>Base Sequence</subject><subject>Biosynthesis</subject><subject>Castanea mollissima</subject><subject>Chestnut</subject><subject>China</subject><subject>Climate</subject><subject>Climate adaptation</subject><subject>Cultivars</subject><subject>Cuticular wax</subject><subject>Divergence</subject><subject>Drought</subject><subject>Enzymes</subject><subject>Epicuticular wax</subject><subject>Fatty acids</subject><subject>Fruits</subject><subject>Gene expression</subject><subject>Genes</subject><subject>Genomes</subject><subject>Keratin</subject><subject>Leaves</subject><subject>Lipids</subject><subject>Pachira insignis</subject><subject>Plant cuticle</subject><subject>Plant Leaves - genetics</subject><subject>Population genetics</subject><subject>Populations</subject><subject>Precipitation</subject><subject>Proteins</subject><subject>Seedlings</subject><subject>Waxes</subject><issn>1422-0067</issn><issn>1661-6596</issn><issn>1422-0067</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNpd0U1rFTEUBuAgiq3VpVsJuOlmNJPv2Qhl6K2FglAVl-HMzJk2l5nkOsko_fdNP7y0rnIgDy_n5RDyvmafhGjYZ7-dExdc1poz_oIc1pLzijFtXj6ZD8iblLaMFaia1-RAaKWUleKQ_D3DEGesfvkB6fmAIfvR95B9DDSONF8jbU8vaVFINzD76YZCGOh3fxXuYch0g5DXBRP1gbaTnyEjPRlgl_cpLaQMAYHOcZp8SsW8Ja9GmBK-e3yPyM_N6Y_2a3Xx7ey8PbmoeiFVrgaBcgQ7oG0YSqF6NoKuTYOdhE50vRS9HruuMUJJAdoqGJXhTGlma4HciiPy5SF3t3YzDn0puMDkdkvZYblxEbx7_hP8tbuKf1xjrDFclYDjx4Al_l4xZTf71OM0lUJxTY4bZWtmpdKFfvyPbuO6hFLvTmkjjKllUdWD6peY0oLjfpmaubuTumcnLf7D0wZ7_e-G4hYLRZ3D</recordid><startdate>20221219</startdate><enddate>20221219</enddate><creator>Zhao, Shuqing</creator><creator>Nie, Xinghua</creator><creator>Liu, Xueqing</creator><creator>Wang, Biyao</creator><creator>Liu, Song</creator><creator>Qin, Ling</creator><creator>Xing, Yu</creator><general>MDPI AG</general><general>MDPI</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>K9.</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>MBDVC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-7359-4714</orcidid><orcidid>https://orcid.org/0000-0002-1647-9736</orcidid></search><sort><creationdate>20221219</creationdate><title>Genome-Wide Identification of the CER Gene Family and Significant Features in Climate Adaptation of Castanea mollissima</title><author>Zhao, Shuqing ; Nie, Xinghua ; Liu, Xueqing ; Wang, Biyao ; Liu, Song ; Qin, Ling ; Xing, Yu</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c345t-d3e4fa8de890e435c0fa6179eb4ab3bc43c6fbb973543a685af5720560813e283</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Adaptation</topic><topic>Alcohol</topic><topic>Base Sequence</topic><topic>Biosynthesis</topic><topic>Castanea mollissima</topic><topic>Chestnut</topic><topic>China</topic><topic>Climate</topic><topic>Climate adaptation</topic><topic>Cultivars</topic><topic>Cuticular wax</topic><topic>Divergence</topic><topic>Drought</topic><topic>Enzymes</topic><topic>Epicuticular wax</topic><topic>Fatty acids</topic><topic>Fruits</topic><topic>Gene expression</topic><topic>Genes</topic><topic>Genomes</topic><topic>Keratin</topic><topic>Leaves</topic><topic>Lipids</topic><topic>Pachira insignis</topic><topic>Plant cuticle</topic><topic>Plant Leaves - genetics</topic><topic>Population genetics</topic><topic>Populations</topic><topic>Precipitation</topic><topic>Proteins</topic><topic>Seedlings</topic><topic>Waxes</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhao, Shuqing</creatorcontrib><creatorcontrib>Nie, Xinghua</creatorcontrib><creatorcontrib>Liu, Xueqing</creatorcontrib><creatorcontrib>Wang, Biyao</creatorcontrib><creatorcontrib>Liu, Song</creatorcontrib><creatorcontrib>Qin, Ling</creatorcontrib><creatorcontrib>Xing, Yu</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Research Library</collection><collection>Research Library (Corporate)</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>International journal of molecular sciences</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhao, Shuqing</au><au>Nie, Xinghua</au><au>Liu, Xueqing</au><au>Wang, Biyao</au><au>Liu, Song</au><au>Qin, Ling</au><au>Xing, Yu</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome-Wide Identification of the CER Gene Family and Significant Features in Climate Adaptation of Castanea mollissima</atitle><jtitle>International journal of molecular sciences</jtitle><addtitle>Int J Mol Sci</addtitle><date>2022-12-19</date><risdate>2022</risdate><volume>23</volume><issue>24</issue><spage>16202</spage><pages>16202-</pages><issn>1422-0067</issn><issn>1661-6596</issn><eissn>1422-0067</eissn><abstract>The plant cuticle is the outermost layer of the aerial organs and an important barrier against biotic and abiotic stresses. The climate varies greatly between the north and south of China, with large differences in temperature and humidity, but Chinese chestnut is found in both regions. This study investigated the relationship between the wax layer of chestnut leaves and environmental adaptation. Firstly, semi-thin sections were used to verify that there is a significant difference in the thickness of the epicuticular wax layer between wild chestnut leaves in northwest and southeast China. Secondly, a whole-genome selective sweep was used to resequence wild chestnut samples from two typical regional populations, and significant genetic divergence was identified between the two populations in the
,
and
genes. Thirty-four
genes were identified in the whole chestnut genome, and a series of predictive analyses were performed on the identified
genes. The expression patterns of
genes were classified into three trends-upregulation, upregulation followed by downregulation and continuous downregulation-when chestnut seedlings were treated with drought stress. Analysis of cultivars from two resource beds in Beijing and Liyang showed that the wax layer of the northern variety was thicker than that of the southern variety. For the Y-2 (
genome sequencing material) cultivar, there were significant differences in the expression of
,
and
between the southern variety and the northern one-year-grafted variety. Therefore, this study suggests that the
family genes play a role in environmental adaptations in chestnut, laying the foundation for further exploration of
genes. It also demonstrates the importance of studying the adaptation of Chinese chestnut wax biosynthesis to the southern and northern environments.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>36555843</pmid><doi>10.3390/ijms232416202</doi><orcidid>https://orcid.org/0000-0002-7359-4714</orcidid><orcidid>https://orcid.org/0000-0002-1647-9736</orcidid><oa>free_for_read</oa></addata></record> |
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source | MDPI - Multidisciplinary Digital Publishing Institute; MEDLINE; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central |
subjects | Adaptation Alcohol Base Sequence Biosynthesis Castanea mollissima Chestnut China Climate Climate adaptation Cultivars Cuticular wax Divergence Drought Enzymes Epicuticular wax Fatty acids Fruits Gene expression Genes Genomes Keratin Leaves Lipids Pachira insignis Plant cuticle Plant Leaves - genetics Population genetics Populations Precipitation Proteins Seedlings Waxes |
title | Genome-Wide Identification of the CER Gene Family and Significant Features in Climate Adaptation of Castanea mollissima |
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