Identification of 146 Metagenome-assembled Genomes from the Rumen Microbiome of Cattle in Japan
The rumen contains a complex microbial ecosystem that degrades plant materials, such as cellulose and hemicellulose. We herein reconstructed 146 nonredundant, rumen-specific metagenome-assembled genomes (MAGs), with ≥50% completeness and
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| Veröffentlicht in: | Microbes and Environments 2022, Vol.37(4), pp.ME22039 |
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| container_title | Microbes and Environments |
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| creator | Sato, Yoshiaki Takebe, Hiroaki Oishi, Kazato Yasuda, Jumpei Kumagai, Hajime Hirooka, Hiroyuki Yoshida, Takashi |
| description | The rumen contains a complex microbial ecosystem that degrades plant materials, such as cellulose and hemicellulose. We herein reconstructed 146 nonredundant, rumen-specific metagenome-assembled genomes (MAGs), with ≥50% completeness and |
| doi_str_mv | 10.1264/jsme2.ME22039 |
| format | Article |
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We herein reconstructed 146 nonredundant, rumen-specific metagenome-assembled genomes (MAGs), with ≥50% completeness and <10% contamination, from cattle in Japan. The majority of MAGs were potentially novel strains, encoding various enzymes related to plant biomass degradation and volatile fatty acid production. 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We herein reconstructed 146 nonredundant, rumen-specific metagenome-assembled genomes (MAGs), with ≥50% completeness and <10% contamination, from cattle in Japan. The majority of MAGs were potentially novel strains, encoding various enzymes related to plant biomass degradation and volatile fatty acid production. The MAGs identified in the present study may be valuable resources to enhance the resolution of future taxonomical and functional studies based on metagenomes and metatranscriptomes.</description><subject>Animals</subject><subject>Bacteria - metabolism</subject><subject>Cattle</subject><subject>Cellulose - metabolism</subject><subject>Japan</subject><subject>Japanese cattle</subject><subject>Metagenome</subject><subject>metagenome-assembled genomes</subject><subject>Metagenomics</subject><subject>microbiome</subject><subject>Microbiota</subject><subject>Phylogeny</subject><subject>Rumen</subject><subject>Short Communication</subject><issn>1342-6311</issn><issn>1347-4405</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpVkFtLAzEQhYMoVquPvkr-wNbcNtl9EaTUWmkRRJ_DdHfSpuylbLaC_97dthZ9mQw5Z75hDiF3nI240OphE0oUo8VECCbTM3LFpTKRUiw-3_ci0pLzAbkOYcOYlLERl2QgtTAySdUVsbMcq9Y7n0Hr64rWjnKl6QJbWGFVlxhBCFguC8zpdP8RqGvqkrZrpO-7Eiu68FlTL30n9dNjaNsCqa_oK2yhuiEXDoqAt8d3SD6fJx_jl2j-Np2Nn-ZRFhvWRiaHNGWYO3RJzFA4gwmATFOl9FKnzBgwgkunTMJAGsMVMqPzHATXmc6FHJLHA3e7W5aYZ91RDRR22_gSmm9bg7f_lcqv7ar-sqnRkineAaIDoDsmhAbdaZYz2ydt90nbY9Kd__7vwpP7N9rOMD4YNqHP8mSApvVZgUecNFb15Yg9qdkaGouV_AE8cpOG</recordid><startdate>2022</startdate><enddate>2022</enddate><creator>Sato, Yoshiaki</creator><creator>Takebe, Hiroaki</creator><creator>Oishi, Kazato</creator><creator>Yasuda, Jumpei</creator><creator>Kumagai, Hajime</creator><creator>Hirooka, Hiroyuki</creator><creator>Yoshida, Takashi</creator><general>Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology / Japanese Society of Plant Microbe Interactions / Japanese Society for Extremophiles</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>5PM</scope></search><sort><creationdate>2022</creationdate><title>Identification of 146 Metagenome-assembled Genomes from the Rumen Microbiome of Cattle in Japan</title><author>Sato, Yoshiaki ; Takebe, Hiroaki ; Oishi, Kazato ; Yasuda, Jumpei ; Kumagai, Hajime ; Hirooka, Hiroyuki ; Yoshida, Takashi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c570t-7da990edfef850e2f7e8aa399446b69077a7213f4780a37714e076dda216c6d23</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Animals</topic><topic>Bacteria - metabolism</topic><topic>Cattle</topic><topic>Cellulose - metabolism</topic><topic>Japan</topic><topic>Japanese cattle</topic><topic>Metagenome</topic><topic>metagenome-assembled genomes</topic><topic>Metagenomics</topic><topic>microbiome</topic><topic>Microbiota</topic><topic>Phylogeny</topic><topic>Rumen</topic><topic>Short Communication</topic><toplevel>online_resources</toplevel><creatorcontrib>Sato, Yoshiaki</creatorcontrib><creatorcontrib>Takebe, Hiroaki</creatorcontrib><creatorcontrib>Oishi, Kazato</creatorcontrib><creatorcontrib>Yasuda, Jumpei</creatorcontrib><creatorcontrib>Kumagai, Hajime</creatorcontrib><creatorcontrib>Hirooka, Hiroyuki</creatorcontrib><creatorcontrib>Yoshida, Takashi</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Microbes and Environments</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sato, Yoshiaki</au><au>Takebe, Hiroaki</au><au>Oishi, Kazato</au><au>Yasuda, Jumpei</au><au>Kumagai, Hajime</au><au>Hirooka, Hiroyuki</au><au>Yoshida, Takashi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Identification of 146 Metagenome-assembled Genomes from the Rumen Microbiome of Cattle in Japan</atitle><jtitle>Microbes and Environments</jtitle><addtitle>Microbes Environ.</addtitle><date>2022</date><risdate>2022</risdate><volume>37</volume><issue>4</issue><spage>ME22039</spage><pages>ME22039-</pages><artnum>ME22039</artnum><issn>1342-6311</issn><eissn>1347-4405</eissn><abstract>The rumen contains a complex microbial ecosystem that degrades plant materials, such as cellulose and hemicellulose. 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| source | J-STAGE Free; MEDLINE; PubMed Central Open Access; EZB-FREE-00999 freely available EZB journals; PubMed Central |
| subjects | Animals Bacteria - metabolism Cattle Cellulose - metabolism Japan Japanese cattle Metagenome metagenome-assembled genomes Metagenomics microbiome Microbiota Phylogeny Rumen Short Communication |
| title | Identification of 146 Metagenome-assembled Genomes from the Rumen Microbiome of Cattle in Japan |
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