Genomic characterization of Salmonella enterica serovar Choleraesuis from Brazil reveals a swine gallbladder isolate harboring colistin resistance gene mcr-1.1

Salmone lla enterica serovar Choleraesuis ( S. Choleraesuis) is a swine-adapted serovar associated to invasive infections in humans. In Brazil, data of strains of this serovar are scarce. In the present study, six S. Choleraesuis strains of animal ( n  = 5) and human ( n  = 1) origin from Brazil wer...

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Veröffentlicht in:Brazilian journal of microbiology 2022-12, Vol.53 (4), p.1799-1806
Hauptverfasser: Vilela, Felipe Pinheiro, Rodrigues, Dália dos Prazeres, Ferreira, Joseane Cristina, Darini, Ana Lúcia da Costa, Allard, Marc William, Falcão, Juliana Pfrimer
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container_issue 4
container_start_page 1799
container_title Brazilian journal of microbiology
container_volume 53
creator Vilela, Felipe Pinheiro
Rodrigues, Dália dos Prazeres
Ferreira, Joseane Cristina
Darini, Ana Lúcia da Costa
Allard, Marc William
Falcão, Juliana Pfrimer
description Salmone lla enterica serovar Choleraesuis ( S. Choleraesuis) is a swine-adapted serovar associated to invasive infections in humans. In Brazil, data of strains of this serovar are scarce. In the present study, six S. Choleraesuis strains of animal ( n  = 5) and human ( n  = 1) origin from Brazil were screened for phenotypic antimicrobial resistance using disk-diffusion assay and using whole-genome sequencing data to search for antimicrobial resistance genes, plasmids, prophages, and Salmonella pathogenicity islands (SPIs). Its genetic relatedness was evaluated by MLST and SNP analysis. A single isolate from swine gallbladder harbored the colistin resistance gene mcr-1.1 into a IncX4 plasmid. In the six strains analyzed, resistance was found to tetracycline, nalidixic acid, ciprofloxacin, ampicillin, piperacillin, streptomycin, cefazoline, gentamycin, sulfamethoxazole-trimethoprim, and choloramphenicol, along with resistance genes aac(6' )-Iaa , aac(3)-IV , aph(3'')-Ib , aph(6)-Id , aph(4)-Ia , aadA1 , aph(3')-IIa , bla TEM-1A , floR , sul1 , sul2 , tet(B) , drfA1 , erm(B) , mph(B) , lnu(G) , qacE , and gyrA point mutation Serine83 → Tyrosine and parC Threonine57 → Serine. Furthermore, IncF and IncH plasmids, ten SPIs, and seven prophage types were detected. All strains were assigned to ST145 and five belonged to a common SNP cluster of S. Choleraesuis strains from Brazil. The presence of S. Choleraesuis isolated from animals harboring relevant antimicrobial resistance profiles and virulence determinants reinforced the urge for enhanced surveillance to avoid its transmission to humans through food items.
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Choleraesuis) is a swine-adapted serovar associated to invasive infections in humans. In Brazil, data of strains of this serovar are scarce. In the present study, six S. Choleraesuis strains of animal ( n  = 5) and human ( n  = 1) origin from Brazil were screened for phenotypic antimicrobial resistance using disk-diffusion assay and using whole-genome sequencing data to search for antimicrobial resistance genes, plasmids, prophages, and Salmonella pathogenicity islands (SPIs). Its genetic relatedness was evaluated by MLST and SNP analysis. A single isolate from swine gallbladder harbored the colistin resistance gene mcr-1.1 into a IncX4 plasmid. In the six strains analyzed, resistance was found to tetracycline, nalidixic acid, ciprofloxacin, ampicillin, piperacillin, streptomycin, cefazoline, gentamycin, sulfamethoxazole-trimethoprim, and choloramphenicol, along with resistance genes aac(6' )-Iaa , aac(3)-IV , aph(3'')-Ib , aph(6)-Id , aph(4)-Ia , aadA1 , aph(3')-IIa , bla TEM-1A , floR , sul1 , sul2 , tet(B) , drfA1 , erm(B) , mph(B) , lnu(G) , qacE , and gyrA point mutation Serine83 → Tyrosine and parC Threonine57 → Serine. Furthermore, IncF and IncH plasmids, ten SPIs, and seven prophage types were detected. All strains were assigned to ST145 and five belonged to a common SNP cluster of S. Choleraesuis strains from Brazil. The presence of S. 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Choleraesuis) is a swine-adapted serovar associated to invasive infections in humans. In Brazil, data of strains of this serovar are scarce. In the present study, six S. Choleraesuis strains of animal ( n  = 5) and human ( n  = 1) origin from Brazil were screened for phenotypic antimicrobial resistance using disk-diffusion assay and using whole-genome sequencing data to search for antimicrobial resistance genes, plasmids, prophages, and Salmonella pathogenicity islands (SPIs). Its genetic relatedness was evaluated by MLST and SNP analysis. A single isolate from swine gallbladder harbored the colistin resistance gene mcr-1.1 into a IncX4 plasmid. 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Choleraesuis) is a swine-adapted serovar associated to invasive infections in humans. In Brazil, data of strains of this serovar are scarce. In the present study, six S. Choleraesuis strains of animal ( n  = 5) and human ( n  = 1) origin from Brazil were screened for phenotypic antimicrobial resistance using disk-diffusion assay and using whole-genome sequencing data to search for antimicrobial resistance genes, plasmids, prophages, and Salmonella pathogenicity islands (SPIs). Its genetic relatedness was evaluated by MLST and SNP analysis. A single isolate from swine gallbladder harbored the colistin resistance gene mcr-1.1 into a IncX4 plasmid. 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subjects Ampicillin
Animals
Anti-Bacterial Agents - pharmacology
Antibiotics
Antimicrobial agents
Antimicrobial resistance
Bacterial Fungal and Virus Molecular Biology - Short Communication
Biomedical and Life Sciences
Brazil
Ciprofloxacin
Colistin
Data search
Drug resistance
Drug Resistance, Multiple, Bacterial - genetics
Food Microbiology
Gallbladder
Gallbladder - microbiology
Gene sequencing
Genes
Genomics
Gentamicin
Life Sciences
Medical Microbiology
Microbial Ecology
Microbial Genetics and Genomics
Microbial Sensitivity Tests
Microbiology
Multilocus Sequence Typing
Mutation
Mycology
Nalidixic acid
Pathogenicity
Pathogenicity islands
Pathogens
Piperacillin
Plasmids
Plasmids - genetics
Point mutation
Prophages
Salmonella
Salmonella enterica
Salmonella enterica - genetics
Serogroup
Single-nucleotide polymorphism
Streptomycin
Sulfamethoxazole
Swine
Swine - microbiology
Trimethoprim
Tyrosine
Virulence
Whole genome sequencing
title Genomic characterization of Salmonella enterica serovar Choleraesuis from Brazil reveals a swine gallbladder isolate harboring colistin resistance gene mcr-1.1
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