Genomic characterization of Salmonella enterica serovar Choleraesuis from Brazil reveals a swine gallbladder isolate harboring colistin resistance gene mcr-1.1
Salmone lla enterica serovar Choleraesuis ( S. Choleraesuis) is a swine-adapted serovar associated to invasive infections in humans. In Brazil, data of strains of this serovar are scarce. In the present study, six S. Choleraesuis strains of animal ( n = 5) and human ( n = 1) origin from Brazil wer...
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creator | Vilela, Felipe Pinheiro Rodrigues, Dália dos Prazeres Ferreira, Joseane Cristina Darini, Ana Lúcia da Costa Allard, Marc William Falcão, Juliana Pfrimer |
description | Salmone
lla enterica
serovar Choleraesuis (
S.
Choleraesuis) is a swine-adapted serovar associated to invasive infections in humans. In Brazil, data of strains of this serovar are scarce. In the present study, six
S.
Choleraesuis strains of animal (
n
= 5) and human (
n
= 1) origin from Brazil were screened for phenotypic antimicrobial resistance using disk-diffusion assay and using whole-genome sequencing data to search for antimicrobial resistance genes, plasmids, prophages, and
Salmonella
pathogenicity islands (SPIs). Its genetic relatedness was evaluated by MLST and SNP analysis. A single isolate from swine gallbladder harbored the colistin resistance gene
mcr-1.1
into a IncX4 plasmid. In the six strains analyzed, resistance was found to tetracycline, nalidixic acid, ciprofloxacin, ampicillin, piperacillin, streptomycin, cefazoline, gentamycin, sulfamethoxazole-trimethoprim, and choloramphenicol, along with resistance genes
aac(6'
)-Iaa
,
aac(3)-IV
,
aph(3'')-Ib
,
aph(6)-Id
,
aph(4)-Ia
,
aadA1
,
aph(3')-IIa
,
bla
TEM-1A
,
floR
,
sul1
,
sul2
,
tet(B)
,
drfA1
,
erm(B)
,
mph(B)
,
lnu(G)
,
qacE
, and
gyrA
point mutation Serine83 → Tyrosine and
parC
Threonine57 → Serine. Furthermore, IncF and IncH plasmids, ten SPIs, and seven prophage types were detected. All strains were assigned to ST145 and five belonged to a common SNP cluster of
S.
Choleraesuis strains from Brazil. The presence of
S.
Choleraesuis isolated from animals harboring relevant antimicrobial resistance profiles and virulence determinants reinforced the urge for enhanced surveillance to avoid its transmission to humans through food items. |
doi_str_mv | 10.1007/s42770-022-00812-3 |
format | Article |
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lla enterica
serovar Choleraesuis (
S.
Choleraesuis) is a swine-adapted serovar associated to invasive infections in humans. In Brazil, data of strains of this serovar are scarce. In the present study, six
S.
Choleraesuis strains of animal (
n
= 5) and human (
n
= 1) origin from Brazil were screened for phenotypic antimicrobial resistance using disk-diffusion assay and using whole-genome sequencing data to search for antimicrobial resistance genes, plasmids, prophages, and
Salmonella
pathogenicity islands (SPIs). Its genetic relatedness was evaluated by MLST and SNP analysis. A single isolate from swine gallbladder harbored the colistin resistance gene
mcr-1.1
into a IncX4 plasmid. In the six strains analyzed, resistance was found to tetracycline, nalidixic acid, ciprofloxacin, ampicillin, piperacillin, streptomycin, cefazoline, gentamycin, sulfamethoxazole-trimethoprim, and choloramphenicol, along with resistance genes
aac(6'
)-Iaa
,
aac(3)-IV
,
aph(3'')-Ib
,
aph(6)-Id
,
aph(4)-Ia
,
aadA1
,
aph(3')-IIa
,
bla
TEM-1A
,
floR
,
sul1
,
sul2
,
tet(B)
,
drfA1
,
erm(B)
,
mph(B)
,
lnu(G)
,
qacE
, and
gyrA
point mutation Serine83 → Tyrosine and
parC
Threonine57 → Serine. Furthermore, IncF and IncH plasmids, ten SPIs, and seven prophage types were detected. All strains were assigned to ST145 and five belonged to a common SNP cluster of
S.
Choleraesuis strains from Brazil. The presence of
S.
Choleraesuis isolated from animals harboring relevant antimicrobial resistance profiles and virulence determinants reinforced the urge for enhanced surveillance to avoid its transmission to humans through food items.</description><identifier>ISSN: 1517-8382</identifier><identifier>ISSN: 1678-4405</identifier><identifier>EISSN: 1678-4405</identifier><identifier>DOI: 10.1007/s42770-022-00812-3</identifier><identifier>PMID: 35984599</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Ampicillin ; Animals ; Anti-Bacterial Agents - pharmacology ; Antibiotics ; Antimicrobial agents ; Antimicrobial resistance ; Bacterial Fungal and Virus Molecular Biology - Short Communication ; Biomedical and Life Sciences ; Brazil ; Ciprofloxacin ; Colistin ; Data search ; Drug resistance ; Drug Resistance, Multiple, Bacterial - genetics ; Food Microbiology ; Gallbladder ; Gallbladder - microbiology ; Gene sequencing ; Genes ; Genomics ; Gentamicin ; Life Sciences ; Medical Microbiology ; Microbial Ecology ; Microbial Genetics and Genomics ; Microbial Sensitivity Tests ; Microbiology ; Multilocus Sequence Typing ; Mutation ; Mycology ; Nalidixic acid ; Pathogenicity ; Pathogenicity islands ; Pathogens ; Piperacillin ; Plasmids ; Plasmids - genetics ; Point mutation ; Prophages ; Salmonella ; Salmonella enterica ; Salmonella enterica - genetics ; Serogroup ; Single-nucleotide polymorphism ; Streptomycin ; Sulfamethoxazole ; Swine ; Swine - microbiology ; Trimethoprim ; Tyrosine ; Virulence ; Whole genome sequencing</subject><ispartof>Brazilian journal of microbiology, 2022-12, Vol.53 (4), p.1799-1806</ispartof><rights>The Author(s) under exclusive licence to Sociedade Brasileira de Microbiologia 2022</rights><rights>2022. The Author(s) under exclusive licence to Sociedade Brasileira de Microbiologia.</rights><rights>The Author(s) under exclusive licence to Sociedade Brasileira de Microbiologia 2022.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c474t-460efc4214b33c52aa9622d458f032b7cc6d32fa8be9142edee40dc850274b193</citedby><cites>FETCH-LOGICAL-c474t-460efc4214b33c52aa9622d458f032b7cc6d32fa8be9142edee40dc850274b193</cites><orcidid>0000-0002-7506-6181 ; 0000-0002-1459-9355</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9679059/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9679059/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,41464,42533,51294,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35984599$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Vilela, Felipe Pinheiro</creatorcontrib><creatorcontrib>Rodrigues, Dália dos Prazeres</creatorcontrib><creatorcontrib>Ferreira, Joseane Cristina</creatorcontrib><creatorcontrib>Darini, Ana Lúcia da Costa</creatorcontrib><creatorcontrib>Allard, Marc William</creatorcontrib><creatorcontrib>Falcão, Juliana Pfrimer</creatorcontrib><title>Genomic characterization of Salmonella enterica serovar Choleraesuis from Brazil reveals a swine gallbladder isolate harboring colistin resistance gene mcr-1.1</title><title>Brazilian journal of microbiology</title><addtitle>Braz J Microbiol</addtitle><addtitle>Braz J Microbiol</addtitle><description>Salmone
lla enterica
serovar Choleraesuis (
S.
Choleraesuis) is a swine-adapted serovar associated to invasive infections in humans. In Brazil, data of strains of this serovar are scarce. In the present study, six
S.
Choleraesuis strains of animal (
n
= 5) and human (
n
= 1) origin from Brazil were screened for phenotypic antimicrobial resistance using disk-diffusion assay and using whole-genome sequencing data to search for antimicrobial resistance genes, plasmids, prophages, and
Salmonella
pathogenicity islands (SPIs). Its genetic relatedness was evaluated by MLST and SNP analysis. A single isolate from swine gallbladder harbored the colistin resistance gene
mcr-1.1
into a IncX4 plasmid. In the six strains analyzed, resistance was found to tetracycline, nalidixic acid, ciprofloxacin, ampicillin, piperacillin, streptomycin, cefazoline, gentamycin, sulfamethoxazole-trimethoprim, and choloramphenicol, along with resistance genes
aac(6'
)-Iaa
,
aac(3)-IV
,
aph(3'')-Ib
,
aph(6)-Id
,
aph(4)-Ia
,
aadA1
,
aph(3')-IIa
,
bla
TEM-1A
,
floR
,
sul1
,
sul2
,
tet(B)
,
drfA1
,
erm(B)
,
mph(B)
,
lnu(G)
,
qacE
, and
gyrA
point mutation Serine83 → Tyrosine and
parC
Threonine57 → Serine. Furthermore, IncF and IncH plasmids, ten SPIs, and seven prophage types were detected. All strains were assigned to ST145 and five belonged to a common SNP cluster of
S.
Choleraesuis strains from Brazil. The presence of
S.
Choleraesuis isolated from animals harboring relevant antimicrobial resistance profiles and virulence determinants reinforced the urge for enhanced surveillance to avoid its transmission to humans through food items.</description><subject>Ampicillin</subject><subject>Animals</subject><subject>Anti-Bacterial Agents - pharmacology</subject><subject>Antibiotics</subject><subject>Antimicrobial agents</subject><subject>Antimicrobial resistance</subject><subject>Bacterial Fungal and Virus Molecular Biology - Short Communication</subject><subject>Biomedical and Life Sciences</subject><subject>Brazil</subject><subject>Ciprofloxacin</subject><subject>Colistin</subject><subject>Data search</subject><subject>Drug resistance</subject><subject>Drug Resistance, Multiple, Bacterial - genetics</subject><subject>Food Microbiology</subject><subject>Gallbladder</subject><subject>Gallbladder - microbiology</subject><subject>Gene sequencing</subject><subject>Genes</subject><subject>Genomics</subject><subject>Gentamicin</subject><subject>Life Sciences</subject><subject>Medical Microbiology</subject><subject>Microbial Ecology</subject><subject>Microbial Genetics and Genomics</subject><subject>Microbial Sensitivity Tests</subject><subject>Microbiology</subject><subject>Multilocus Sequence Typing</subject><subject>Mutation</subject><subject>Mycology</subject><subject>Nalidixic acid</subject><subject>Pathogenicity</subject><subject>Pathogenicity islands</subject><subject>Pathogens</subject><subject>Piperacillin</subject><subject>Plasmids</subject><subject>Plasmids - genetics</subject><subject>Point mutation</subject><subject>Prophages</subject><subject>Salmonella</subject><subject>Salmonella enterica</subject><subject>Salmonella enterica - genetics</subject><subject>Serogroup</subject><subject>Single-nucleotide polymorphism</subject><subject>Streptomycin</subject><subject>Sulfamethoxazole</subject><subject>Swine</subject><subject>Swine - microbiology</subject><subject>Trimethoprim</subject><subject>Tyrosine</subject><subject>Virulence</subject><subject>Whole genome sequencing</subject><issn>1517-8382</issn><issn>1678-4405</issn><issn>1678-4405</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kc1u1TAQhSMEoqXwAiyQJTZsUvyX2Nkg0SsoSJVYAGtr4kzudeXYFzu5iL4Mr4rDLeVnwcojzXfOeOZU1VNGzxml6mWWXClaU85rSjXjtbhXnbJW6VpK2twvdcNUrYXmJ9WjnK8p5Q2V_GF1IppOy6brTqvvlxji5CyxO0hgZ0zuBmYXA4kj-Qh-igG9B4JhbVkgGVM8QCKbXfSYAPPiMhlTnMhFghvnScIDgs-koF9dQLIF73sPw4CJuBw9zEjKrD4mF7bERu_y7EKR5VJAsEWBRTbZVLNz9rh6MBY3fHL7nlWf3775tHlXX324fL95fVVbqeRcy5biaCVnshfCNhygazkfZKNHKnivrG0HwUfQPXZMchwQJR2sbihXsmedOKteHX33Sz_hYMu-CbzZJzdB-mYiOPN3J7id2caD6VrV0WY1eHFrkOKXBfNsJpfteruAccmGKyp123Gxos__Qa_jkkJZr1BCN1oLKQvFj5RNMeeE491nGDVr_uaYvyn5m5_5G1FEz_5c407yK_ACiCOQ9-v9Mf2e_R_bH68kv4w</recordid><startdate>20221201</startdate><enddate>20221201</enddate><creator>Vilela, Felipe Pinheiro</creator><creator>Rodrigues, Dália dos Prazeres</creator><creator>Ferreira, Joseane Cristina</creator><creator>Darini, Ana Lúcia da Costa</creator><creator>Allard, Marc William</creator><creator>Falcão, Juliana Pfrimer</creator><general>Springer International Publishing</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7U9</scope><scope>C1K</scope><scope>H94</scope><scope>K9.</scope><scope>M7N</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-7506-6181</orcidid><orcidid>https://orcid.org/0000-0002-1459-9355</orcidid></search><sort><creationdate>20221201</creationdate><title>Genomic characterization of Salmonella enterica serovar Choleraesuis from Brazil reveals a swine gallbladder isolate harboring colistin resistance gene mcr-1.1</title><author>Vilela, Felipe Pinheiro ; Rodrigues, Dália dos Prazeres ; Ferreira, Joseane Cristina ; Darini, Ana Lúcia da Costa ; Allard, Marc William ; Falcão, Juliana Pfrimer</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c474t-460efc4214b33c52aa9622d458f032b7cc6d32fa8be9142edee40dc850274b193</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Ampicillin</topic><topic>Animals</topic><topic>Anti-Bacterial Agents - pharmacology</topic><topic>Antibiotics</topic><topic>Antimicrobial agents</topic><topic>Antimicrobial resistance</topic><topic>Bacterial Fungal and Virus Molecular Biology - Short Communication</topic><topic>Biomedical and Life Sciences</topic><topic>Brazil</topic><topic>Ciprofloxacin</topic><topic>Colistin</topic><topic>Data search</topic><topic>Drug resistance</topic><topic>Drug Resistance, Multiple, Bacterial - genetics</topic><topic>Food Microbiology</topic><topic>Gallbladder</topic><topic>Gallbladder - microbiology</topic><topic>Gene sequencing</topic><topic>Genes</topic><topic>Genomics</topic><topic>Gentamicin</topic><topic>Life Sciences</topic><topic>Medical Microbiology</topic><topic>Microbial Ecology</topic><topic>Microbial Genetics and Genomics</topic><topic>Microbial Sensitivity Tests</topic><topic>Microbiology</topic><topic>Multilocus Sequence Typing</topic><topic>Mutation</topic><topic>Mycology</topic><topic>Nalidixic acid</topic><topic>Pathogenicity</topic><topic>Pathogenicity islands</topic><topic>Pathogens</topic><topic>Piperacillin</topic><topic>Plasmids</topic><topic>Plasmids - genetics</topic><topic>Point mutation</topic><topic>Prophages</topic><topic>Salmonella</topic><topic>Salmonella enterica</topic><topic>Salmonella enterica - genetics</topic><topic>Serogroup</topic><topic>Single-nucleotide polymorphism</topic><topic>Streptomycin</topic><topic>Sulfamethoxazole</topic><topic>Swine</topic><topic>Swine - microbiology</topic><topic>Trimethoprim</topic><topic>Tyrosine</topic><topic>Virulence</topic><topic>Whole genome sequencing</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Vilela, Felipe Pinheiro</creatorcontrib><creatorcontrib>Rodrigues, Dália dos Prazeres</creatorcontrib><creatorcontrib>Ferreira, Joseane Cristina</creatorcontrib><creatorcontrib>Darini, Ana Lúcia da Costa</creatorcontrib><creatorcontrib>Allard, Marc William</creatorcontrib><creatorcontrib>Falcão, Juliana Pfrimer</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Virology and AIDS Abstracts</collection><collection>Environmental Sciences and Pollution Management</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Brazilian journal of microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Vilela, Felipe Pinheiro</au><au>Rodrigues, Dália dos Prazeres</au><au>Ferreira, Joseane Cristina</au><au>Darini, Ana Lúcia da Costa</au><au>Allard, Marc William</au><au>Falcão, Juliana Pfrimer</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genomic characterization of Salmonella enterica serovar Choleraesuis from Brazil reveals a swine gallbladder isolate harboring colistin resistance gene mcr-1.1</atitle><jtitle>Brazilian journal of microbiology</jtitle><stitle>Braz J Microbiol</stitle><addtitle>Braz J Microbiol</addtitle><date>2022-12-01</date><risdate>2022</risdate><volume>53</volume><issue>4</issue><spage>1799</spage><epage>1806</epage><pages>1799-1806</pages><issn>1517-8382</issn><issn>1678-4405</issn><eissn>1678-4405</eissn><abstract>Salmone
lla enterica
serovar Choleraesuis (
S.
Choleraesuis) is a swine-adapted serovar associated to invasive infections in humans. In Brazil, data of strains of this serovar are scarce. In the present study, six
S.
Choleraesuis strains of animal (
n
= 5) and human (
n
= 1) origin from Brazil were screened for phenotypic antimicrobial resistance using disk-diffusion assay and using whole-genome sequencing data to search for antimicrobial resistance genes, plasmids, prophages, and
Salmonella
pathogenicity islands (SPIs). Its genetic relatedness was evaluated by MLST and SNP analysis. A single isolate from swine gallbladder harbored the colistin resistance gene
mcr-1.1
into a IncX4 plasmid. In the six strains analyzed, resistance was found to tetracycline, nalidixic acid, ciprofloxacin, ampicillin, piperacillin, streptomycin, cefazoline, gentamycin, sulfamethoxazole-trimethoprim, and choloramphenicol, along with resistance genes
aac(6'
)-Iaa
,
aac(3)-IV
,
aph(3'')-Ib
,
aph(6)-Id
,
aph(4)-Ia
,
aadA1
,
aph(3')-IIa
,
bla
TEM-1A
,
floR
,
sul1
,
sul2
,
tet(B)
,
drfA1
,
erm(B)
,
mph(B)
,
lnu(G)
,
qacE
, and
gyrA
point mutation Serine83 → Tyrosine and
parC
Threonine57 → Serine. Furthermore, IncF and IncH plasmids, ten SPIs, and seven prophage types were detected. All strains were assigned to ST145 and five belonged to a common SNP cluster of
S.
Choleraesuis strains from Brazil. The presence of
S.
Choleraesuis isolated from animals harboring relevant antimicrobial resistance profiles and virulence determinants reinforced the urge for enhanced surveillance to avoid its transmission to humans through food items.</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><pmid>35984599</pmid><doi>10.1007/s42770-022-00812-3</doi><tpages>8</tpages><orcidid>https://orcid.org/0000-0002-7506-6181</orcidid><orcidid>https://orcid.org/0000-0002-1459-9355</orcidid><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
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language | eng |
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source | MEDLINE; Springer Nature - Complete Springer Journals; PubMed Central; Alma/SFX Local Collection |
subjects | Ampicillin Animals Anti-Bacterial Agents - pharmacology Antibiotics Antimicrobial agents Antimicrobial resistance Bacterial Fungal and Virus Molecular Biology - Short Communication Biomedical and Life Sciences Brazil Ciprofloxacin Colistin Data search Drug resistance Drug Resistance, Multiple, Bacterial - genetics Food Microbiology Gallbladder Gallbladder - microbiology Gene sequencing Genes Genomics Gentamicin Life Sciences Medical Microbiology Microbial Ecology Microbial Genetics and Genomics Microbial Sensitivity Tests Microbiology Multilocus Sequence Typing Mutation Mycology Nalidixic acid Pathogenicity Pathogenicity islands Pathogens Piperacillin Plasmids Plasmids - genetics Point mutation Prophages Salmonella Salmonella enterica Salmonella enterica - genetics Serogroup Single-nucleotide polymorphism Streptomycin Sulfamethoxazole Swine Swine - microbiology Trimethoprim Tyrosine Virulence Whole genome sequencing |
title | Genomic characterization of Salmonella enterica serovar Choleraesuis from Brazil reveals a swine gallbladder isolate harboring colistin resistance gene mcr-1.1 |
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