Molecular mechanisms of spontaneous curvature and softening in complex lipid bilayer mixtures
Membrane reshaping is an essential biological process. The chemical composition of lipid membranes determines their mechanical properties and thus the energetics of their shape. Hundreds of distinct lipid species make up native bilayers, and this diversity complicates efforts to uncover what composi...
Gespeichert in:
Veröffentlicht in: | Biophysical journal 2022-09, Vol.121 (17), p.3188-3199 |
---|---|
Hauptverfasser: | , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 3199 |
---|---|
container_issue | 17 |
container_start_page | 3188 |
container_title | Biophysical journal |
container_volume | 121 |
creator | Lessen, Henry J. Sapp, Kayla C. Beaven, Andrew H. Ashkar, Rana Sodt, Alexander J. |
description | Membrane reshaping is an essential biological process. The chemical composition of lipid membranes determines their mechanical properties and thus the energetics of their shape. Hundreds of distinct lipid species make up native bilayers, and this diversity complicates efforts to uncover what compositional factors drive membrane stability in cells. Simplifying assumptions, therefore, are used to generate quantitative predictions of bilayer dynamics based on lipid composition. One assumption commonly used is that “per lipid” mechanical properties are both additive and constant—that they are an intrinsic property of lipids independent of the surrounding composition. Related to this is the assumption that lipid bulkiness, or “shape,” determines its curvature preference, independently of context. In this study, all-atom molecular dynamics simulations on three separate multilipid systems were used to explicitly test these assumptions, applying methodology recently developed to isolate properties of single lipids or nanometer-scale patches of lipids. The curvature preference experienced by populations of lipid conformations were inferred from their redistribution on a dynamically fluctuating bilayer. Representative populations were extracted by both structural similarity and semi-automated hidden Markov model analysis. The curvature preferences of lipid dimers were then determined and compared with an additive model that combines the monomer curvature preference of both the individual lipids. In all three systems, we identified conformational subpopulations of lipid dimers that showed non-additive curvature preference, in each case mediated by a special chemical interaction (e.g., hydrogen bonding). Our study highlights the importance of specific chemical interactions between lipids in multicomponent bilayers and the impact of interactions on bilayer stiffness. We identify two mechanisms of bilayer softening: diffusional softening, driven by the dynamic coupling between lipid distributions and membrane undulations, and conformational softening, driven by the inter-conversion between distinct dimeric conformations. |
doi_str_mv | 10.1016/j.bpj.2022.07.036 |
format | Article |
fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_9463698</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S0006349522006099</els_id><sourcerecordid>2699703388</sourcerecordid><originalsourceid>FETCH-LOGICAL-c451t-f841f461cdf391bc312a9b95237eff2c8cdc5929bfe86a6043f85a63d02694d63</originalsourceid><addsrcrecordid>eNp9kU1v1DAQhi0EokvhB3BBPnJJ8EfixEJCQhXQSkVc4Igsxx63Xjl2sJNV--_xaksFF05zmGeeGc2L0GtKWkqoeLdvp2XfMsJYS4aWcPEE7WjfsYaQUTxFO0KIaHgn-zP0opQ9IZT1hD5HZ7yXbJA936GfX1MAswWd8QzmVkdf5oKTw2VJcdUR0law2fJBr1sGrKPFJbkVoo832Eds0rwEuMPBL97iyQd9D1Xl7454eYmeOR0KvHqo5-jH50_fLy6b629fri4-Xjem6-nauLGjrhPUWMclnQynTMtJ9owP4Bwzo7GmXiwnB6PQgnTcjb0W3BImZGcFP0cfTt5lm2awBuKadVBL9rPO9yppr_7tRH-rbtJByU5wIccqePsgyOnXBmVVsy8GQjh9QNU9ciCcj0eUnlCTUykZ3OMaStQxFrVXNRZ1jEWRQdVY6sybv-97nPiTQwXenwCoXzp4yKoYD9GA9RnMqmzy_9H_BlwWoOE</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2699703388</pqid></control><display><type>article</type><title>Molecular mechanisms of spontaneous curvature and softening in complex lipid bilayer mixtures</title><source>MEDLINE</source><source>Elsevier ScienceDirect Journals Complete</source><source>Cell Press Free Archives</source><source>EZB-FREE-00999 freely available EZB journals</source><source>PubMed Central</source><creator>Lessen, Henry J. ; Sapp, Kayla C. ; Beaven, Andrew H. ; Ashkar, Rana ; Sodt, Alexander J.</creator><creatorcontrib>Lessen, Henry J. ; Sapp, Kayla C. ; Beaven, Andrew H. ; Ashkar, Rana ; Sodt, Alexander J.</creatorcontrib><description>Membrane reshaping is an essential biological process. The chemical composition of lipid membranes determines their mechanical properties and thus the energetics of their shape. Hundreds of distinct lipid species make up native bilayers, and this diversity complicates efforts to uncover what compositional factors drive membrane stability in cells. Simplifying assumptions, therefore, are used to generate quantitative predictions of bilayer dynamics based on lipid composition. One assumption commonly used is that “per lipid” mechanical properties are both additive and constant—that they are an intrinsic property of lipids independent of the surrounding composition. Related to this is the assumption that lipid bulkiness, or “shape,” determines its curvature preference, independently of context. In this study, all-atom molecular dynamics simulations on three separate multilipid systems were used to explicitly test these assumptions, applying methodology recently developed to isolate properties of single lipids or nanometer-scale patches of lipids. The curvature preference experienced by populations of lipid conformations were inferred from their redistribution on a dynamically fluctuating bilayer. Representative populations were extracted by both structural similarity and semi-automated hidden Markov model analysis. The curvature preferences of lipid dimers were then determined and compared with an additive model that combines the monomer curvature preference of both the individual lipids. In all three systems, we identified conformational subpopulations of lipid dimers that showed non-additive curvature preference, in each case mediated by a special chemical interaction (e.g., hydrogen bonding). Our study highlights the importance of specific chemical interactions between lipids in multicomponent bilayers and the impact of interactions on bilayer stiffness. We identify two mechanisms of bilayer softening: diffusional softening, driven by the dynamic coupling between lipid distributions and membrane undulations, and conformational softening, driven by the inter-conversion between distinct dimeric conformations.</description><identifier>ISSN: 0006-3495</identifier><identifier>ISSN: 1542-0086</identifier><identifier>EISSN: 1542-0086</identifier><identifier>DOI: 10.1016/j.bpj.2022.07.036</identifier><identifier>PMID: 35927953</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Hydrogen Bonding ; Lipid Bilayers - chemistry ; Molecular Conformation ; Molecular Dynamics Simulation</subject><ispartof>Biophysical journal, 2022-09, Vol.121 (17), p.3188-3199</ispartof><rights>2022</rights><rights>Published by Elsevier Inc.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c451t-f841f461cdf391bc312a9b95237eff2c8cdc5929bfe86a6043f85a63d02694d63</citedby><cites>FETCH-LOGICAL-c451t-f841f461cdf391bc312a9b95237eff2c8cdc5929bfe86a6043f85a63d02694d63</cites><orcidid>0000-0002-5570-8212</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9463698/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.bpj.2022.07.036$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,3550,27924,27925,45995,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35927953$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lessen, Henry J.</creatorcontrib><creatorcontrib>Sapp, Kayla C.</creatorcontrib><creatorcontrib>Beaven, Andrew H.</creatorcontrib><creatorcontrib>Ashkar, Rana</creatorcontrib><creatorcontrib>Sodt, Alexander J.</creatorcontrib><title>Molecular mechanisms of spontaneous curvature and softening in complex lipid bilayer mixtures</title><title>Biophysical journal</title><addtitle>Biophys J</addtitle><description>Membrane reshaping is an essential biological process. The chemical composition of lipid membranes determines their mechanical properties and thus the energetics of their shape. Hundreds of distinct lipid species make up native bilayers, and this diversity complicates efforts to uncover what compositional factors drive membrane stability in cells. Simplifying assumptions, therefore, are used to generate quantitative predictions of bilayer dynamics based on lipid composition. One assumption commonly used is that “per lipid” mechanical properties are both additive and constant—that they are an intrinsic property of lipids independent of the surrounding composition. Related to this is the assumption that lipid bulkiness, or “shape,” determines its curvature preference, independently of context. In this study, all-atom molecular dynamics simulations on three separate multilipid systems were used to explicitly test these assumptions, applying methodology recently developed to isolate properties of single lipids or nanometer-scale patches of lipids. The curvature preference experienced by populations of lipid conformations were inferred from their redistribution on a dynamically fluctuating bilayer. Representative populations were extracted by both structural similarity and semi-automated hidden Markov model analysis. The curvature preferences of lipid dimers were then determined and compared with an additive model that combines the monomer curvature preference of both the individual lipids. In all three systems, we identified conformational subpopulations of lipid dimers that showed non-additive curvature preference, in each case mediated by a special chemical interaction (e.g., hydrogen bonding). Our study highlights the importance of specific chemical interactions between lipids in multicomponent bilayers and the impact of interactions on bilayer stiffness. We identify two mechanisms of bilayer softening: diffusional softening, driven by the dynamic coupling between lipid distributions and membrane undulations, and conformational softening, driven by the inter-conversion between distinct dimeric conformations.</description><subject>Hydrogen Bonding</subject><subject>Lipid Bilayers - chemistry</subject><subject>Molecular Conformation</subject><subject>Molecular Dynamics Simulation</subject><issn>0006-3495</issn><issn>1542-0086</issn><issn>1542-0086</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kU1v1DAQhi0EokvhB3BBPnJJ8EfixEJCQhXQSkVc4Igsxx63Xjl2sJNV--_xaksFF05zmGeeGc2L0GtKWkqoeLdvp2XfMsJYS4aWcPEE7WjfsYaQUTxFO0KIaHgn-zP0opQ9IZT1hD5HZ7yXbJA936GfX1MAswWd8QzmVkdf5oKTw2VJcdUR0law2fJBr1sGrKPFJbkVoo832Eds0rwEuMPBL97iyQd9D1Xl7454eYmeOR0KvHqo5-jH50_fLy6b629fri4-Xjem6-nauLGjrhPUWMclnQynTMtJ9owP4Bwzo7GmXiwnB6PQgnTcjb0W3BImZGcFP0cfTt5lm2awBuKadVBL9rPO9yppr_7tRH-rbtJByU5wIccqePsgyOnXBmVVsy8GQjh9QNU9ciCcj0eUnlCTUykZ3OMaStQxFrVXNRZ1jEWRQdVY6sybv-97nPiTQwXenwCoXzp4yKoYD9GA9RnMqmzy_9H_BlwWoOE</recordid><startdate>20220906</startdate><enddate>20220906</enddate><creator>Lessen, Henry J.</creator><creator>Sapp, Kayla C.</creator><creator>Beaven, Andrew H.</creator><creator>Ashkar, Rana</creator><creator>Sodt, Alexander J.</creator><general>Elsevier Inc</general><general>The Biophysical Society</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-5570-8212</orcidid></search><sort><creationdate>20220906</creationdate><title>Molecular mechanisms of spontaneous curvature and softening in complex lipid bilayer mixtures</title><author>Lessen, Henry J. ; Sapp, Kayla C. ; Beaven, Andrew H. ; Ashkar, Rana ; Sodt, Alexander J.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c451t-f841f461cdf391bc312a9b95237eff2c8cdc5929bfe86a6043f85a63d02694d63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Hydrogen Bonding</topic><topic>Lipid Bilayers - chemistry</topic><topic>Molecular Conformation</topic><topic>Molecular Dynamics Simulation</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lessen, Henry J.</creatorcontrib><creatorcontrib>Sapp, Kayla C.</creatorcontrib><creatorcontrib>Beaven, Andrew H.</creatorcontrib><creatorcontrib>Ashkar, Rana</creatorcontrib><creatorcontrib>Sodt, Alexander J.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Biophysical journal</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lessen, Henry J.</au><au>Sapp, Kayla C.</au><au>Beaven, Andrew H.</au><au>Ashkar, Rana</au><au>Sodt, Alexander J.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Molecular mechanisms of spontaneous curvature and softening in complex lipid bilayer mixtures</atitle><jtitle>Biophysical journal</jtitle><addtitle>Biophys J</addtitle><date>2022-09-06</date><risdate>2022</risdate><volume>121</volume><issue>17</issue><spage>3188</spage><epage>3199</epage><pages>3188-3199</pages><issn>0006-3495</issn><issn>1542-0086</issn><eissn>1542-0086</eissn><abstract>Membrane reshaping is an essential biological process. The chemical composition of lipid membranes determines their mechanical properties and thus the energetics of their shape. Hundreds of distinct lipid species make up native bilayers, and this diversity complicates efforts to uncover what compositional factors drive membrane stability in cells. Simplifying assumptions, therefore, are used to generate quantitative predictions of bilayer dynamics based on lipid composition. One assumption commonly used is that “per lipid” mechanical properties are both additive and constant—that they are an intrinsic property of lipids independent of the surrounding composition. Related to this is the assumption that lipid bulkiness, or “shape,” determines its curvature preference, independently of context. In this study, all-atom molecular dynamics simulations on three separate multilipid systems were used to explicitly test these assumptions, applying methodology recently developed to isolate properties of single lipids or nanometer-scale patches of lipids. The curvature preference experienced by populations of lipid conformations were inferred from their redistribution on a dynamically fluctuating bilayer. Representative populations were extracted by both structural similarity and semi-automated hidden Markov model analysis. The curvature preferences of lipid dimers were then determined and compared with an additive model that combines the monomer curvature preference of both the individual lipids. In all three systems, we identified conformational subpopulations of lipid dimers that showed non-additive curvature preference, in each case mediated by a special chemical interaction (e.g., hydrogen bonding). Our study highlights the importance of specific chemical interactions between lipids in multicomponent bilayers and the impact of interactions on bilayer stiffness. We identify two mechanisms of bilayer softening: diffusional softening, driven by the dynamic coupling between lipid distributions and membrane undulations, and conformational softening, driven by the inter-conversion between distinct dimeric conformations.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>35927953</pmid><doi>10.1016/j.bpj.2022.07.036</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0002-5570-8212</orcidid><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0006-3495 |
ispartof | Biophysical journal, 2022-09, Vol.121 (17), p.3188-3199 |
issn | 0006-3495 1542-0086 1542-0086 |
language | eng |
recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_9463698 |
source | MEDLINE; Elsevier ScienceDirect Journals Complete; Cell Press Free Archives; EZB-FREE-00999 freely available EZB journals; PubMed Central |
subjects | Hydrogen Bonding Lipid Bilayers - chemistry Molecular Conformation Molecular Dynamics Simulation |
title | Molecular mechanisms of spontaneous curvature and softening in complex lipid bilayer mixtures |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-01T13%3A57%3A44IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Molecular%20mechanisms%20of%20spontaneous%20curvature%20and%20softening%20in%20complex%20lipid%20bilayer%20mixtures&rft.jtitle=Biophysical%20journal&rft.au=Lessen,%20Henry%20J.&rft.date=2022-09-06&rft.volume=121&rft.issue=17&rft.spage=3188&rft.epage=3199&rft.pages=3188-3199&rft.issn=0006-3495&rft.eissn=1542-0086&rft_id=info:doi/10.1016/j.bpj.2022.07.036&rft_dat=%3Cproquest_pubme%3E2699703388%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2699703388&rft_id=info:pmid/35927953&rft_els_id=S0006349522006099&rfr_iscdi=true |