Comparison of Bacterial and Fungal Community Structure and Potential Function Analysis of Yak Feces before and after Weaning
Weaning is one of the most stressful periods in yak growth. However, the impact of weaning on microbial diversity, structure, and potential function of yak feces is not clear. In this study, 12 Xinjiang yaks aged 3, 4, 5, and 6 months old were selected to collect fresh feces before and after weaning...
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| creator | Li, Yuanyuan Li, Xin Liu, Yanfeng Nie, Cunxi Chen, Cheng Niu, Junli Zhang, Wenju |
| description | Weaning is one of the most stressful periods in yak growth. However, the impact of weaning on microbial diversity, structure, and potential function of yak feces is not clear. In this study, 12 Xinjiang yaks aged 3, 4, 5, and 6 months old were selected to collect fresh feces before and after weaning. Through 16S rRNA and ITS high-throughput sequencing, the dynamic distribution and potential function of yak fecal, bacterial, and fungal communities in each month were revealed. The study found that the richness of fungi had a significant impact on weaning. At the phylum level, Firmicutes, Bacteroidetes, Ascomycota, and Basidiomycota, and at the genus level, 5-7N15, Oscillospira, Roseburia, Dorea, Preussia, Neoascochyta, Naganishia, and Sporormiella were enriched in yak feces of different months old. The abundance and proportion of bacteria Firmicutes, Bacteroidetes, 5-7N15, and fungi Mucoromyceta changed significantly before and after weaning. With the increase of months, Verrucomicrobia and Akkermansia have shown a downward trend. Through the prediction and analysis of fecal microbial function, it was found that at the level of primary pathways, weaning has a significant impact on cellular processes, environmental information processing, genetic information processing, metabolism, and organismal systems. At the level of secondary metabolic pathways, weaning has a significant impact on cell motility, signal transduction, folding, sorting and degradation, translation, amino acid metabolism, glycan biosynthesis and metabolism, metabolism of terpenoids and polyketides, and xenobiotics biodegradation and metabolism. In addition, by analyzing the differences in functional pathways and microbial composition between sample groups of different months, it was found that the differences in functional pathways were related to the abundance differences of some microorganisms. In general, the changes in the composition and structure of yak fecal microflora may reflect the adaptability of the intestinal microbiota. |
| doi_str_mv | 10.1155/2022/6297231 |
| format | Article |
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However, the impact of weaning on microbial diversity, structure, and potential function of yak feces is not clear. In this study, 12 Xinjiang yaks aged 3, 4, 5, and 6 months old were selected to collect fresh feces before and after weaning. Through 16S rRNA and ITS high-throughput sequencing, the dynamic distribution and potential function of yak fecal, bacterial, and fungal communities in each month were revealed. The study found that the richness of fungi had a significant impact on weaning. At the phylum level, Firmicutes, Bacteroidetes, Ascomycota, and Basidiomycota, and at the genus level, 5-7N15, Oscillospira, Roseburia, Dorea, Preussia, Neoascochyta, Naganishia, and Sporormiella were enriched in yak feces of different months old. The abundance and proportion of bacteria Firmicutes, Bacteroidetes, 5-7N15, and fungi Mucoromyceta changed significantly before and after weaning. With the increase of months, Verrucomicrobia and Akkermansia have shown a downward trend. Through the prediction and analysis of fecal microbial function, it was found that at the level of primary pathways, weaning has a significant impact on cellular processes, environmental information processing, genetic information processing, metabolism, and organismal systems. At the level of secondary metabolic pathways, weaning has a significant impact on cell motility, signal transduction, folding, sorting and degradation, translation, amino acid metabolism, glycan biosynthesis and metabolism, metabolism of terpenoids and polyketides, and xenobiotics biodegradation and metabolism. In addition, by analyzing the differences in functional pathways and microbial composition between sample groups of different months, it was found that the differences in functional pathways were related to the abundance differences of some microorganisms. In general, the changes in the composition and structure of yak fecal microflora may reflect the adaptability of the intestinal microbiota.</description><identifier>ISSN: 2314-6133</identifier><identifier>EISSN: 2314-6141</identifier><identifier>DOI: 10.1155/2022/6297231</identifier><identifier>PMID: 36082156</identifier><language>eng</language><publisher>New York: Hindawi</publisher><subject>Abundance ; Adaptability ; Amino acids ; Bacteria ; Bacteroidetes ; Biodegradation ; Bioinformatics ; Biosynthesis ; Biotechnology ; Community structure ; Composition ; Data processing ; Discriminant analysis ; DNA polymerase ; Environmental information ; Fecal microflora ; Feces ; Firmicutes ; Function analysis ; Fungi ; Genetic testing ; Glycan ; Infants ; Information processing ; Intestinal microflora ; Metabolic pathways ; Metabolism ; Microbiota ; Microbiota (Symbiotic organisms) ; Microorganisms ; Next-generation sequencing ; Physiological aspects ; Polyketides ; Reagents ; Regulation ; rRNA 16S ; Ruminants ; Sequences ; Signal transduction ; Software ; Structure-function relationships ; Terpenes ; Testing ; Thermal cycling ; Variance analysis ; Weaning ; Xenobiotics ; Yaks</subject><ispartof>BioMed research international, 2022, Vol.2022 (1), p.6297231-6297231</ispartof><rights>Copyright © 2022 Yuanyuan Li et al.</rights><rights>COPYRIGHT 2022 John Wiley & Sons, Inc.</rights><rights>Copyright © 2022 Yuanyuan Li et al. This is an open access article distributed under the Creative Commons Attribution License (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. https://creativecommons.org/licenses/by/4.0</rights><rights>Copyright © 2022 Yuanyuan Li et al. 2022</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c453t-564b6056969d26ad522afc2940446ed73b971466b0a95e64aec5e6896868771e3</citedby><cites>FETCH-LOGICAL-c453t-564b6056969d26ad522afc2940446ed73b971466b0a95e64aec5e6896868771e3</cites><orcidid>0000-0002-6206-6879 ; 0000-0002-0242-9332 ; 0000-0002-3039-2389 ; 0000-0003-0819-7509 ; 0000-0003-3320-2840 ; 0000-0001-6744-5029 ; 0000-0002-5314-9904</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9448584/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9448584/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,4010,27900,27901,27902,53766,53768</link.rule.ids></links><search><contributor>Li, Kun</contributor><contributor>Kun Li</contributor><creatorcontrib>Li, Yuanyuan</creatorcontrib><creatorcontrib>Li, Xin</creatorcontrib><creatorcontrib>Liu, Yanfeng</creatorcontrib><creatorcontrib>Nie, Cunxi</creatorcontrib><creatorcontrib>Chen, Cheng</creatorcontrib><creatorcontrib>Niu, Junli</creatorcontrib><creatorcontrib>Zhang, Wenju</creatorcontrib><title>Comparison of Bacterial and Fungal Community Structure and Potential Function Analysis of Yak Feces before and after Weaning</title><title>BioMed research international</title><description>Weaning is one of the most stressful periods in yak growth. However, the impact of weaning on microbial diversity, structure, and potential function of yak feces is not clear. In this study, 12 Xinjiang yaks aged 3, 4, 5, and 6 months old were selected to collect fresh feces before and after weaning. Through 16S rRNA and ITS high-throughput sequencing, the dynamic distribution and potential function of yak fecal, bacterial, and fungal communities in each month were revealed. The study found that the richness of fungi had a significant impact on weaning. At the phylum level, Firmicutes, Bacteroidetes, Ascomycota, and Basidiomycota, and at the genus level, 5-7N15, Oscillospira, Roseburia, Dorea, Preussia, Neoascochyta, Naganishia, and Sporormiella were enriched in yak feces of different months old. The abundance and proportion of bacteria Firmicutes, Bacteroidetes, 5-7N15, and fungi Mucoromyceta changed significantly before and after weaning. With the increase of months, Verrucomicrobia and Akkermansia have shown a downward trend. Through the prediction and analysis of fecal microbial function, it was found that at the level of primary pathways, weaning has a significant impact on cellular processes, environmental information processing, genetic information processing, metabolism, and organismal systems. At the level of secondary metabolic pathways, weaning has a significant impact on cell motility, signal transduction, folding, sorting and degradation, translation, amino acid metabolism, glycan biosynthesis and metabolism, metabolism of terpenoids and polyketides, and xenobiotics biodegradation and metabolism. In addition, by analyzing the differences in functional pathways and microbial composition between sample groups of different months, it was found that the differences in functional pathways were related to the abundance differences of some microorganisms. In general, the changes in the composition and structure of yak fecal microflora may reflect the adaptability of the intestinal microbiota.</description><subject>Abundance</subject><subject>Adaptability</subject><subject>Amino acids</subject><subject>Bacteria</subject><subject>Bacteroidetes</subject><subject>Biodegradation</subject><subject>Bioinformatics</subject><subject>Biosynthesis</subject><subject>Biotechnology</subject><subject>Community structure</subject><subject>Composition</subject><subject>Data processing</subject><subject>Discriminant analysis</subject><subject>DNA polymerase</subject><subject>Environmental information</subject><subject>Fecal microflora</subject><subject>Feces</subject><subject>Firmicutes</subject><subject>Function analysis</subject><subject>Fungi</subject><subject>Genetic testing</subject><subject>Glycan</subject><subject>Infants</subject><subject>Information processing</subject><subject>Intestinal microflora</subject><subject>Metabolic pathways</subject><subject>Metabolism</subject><subject>Microbiota</subject><subject>Microbiota (Symbiotic organisms)</subject><subject>Microorganisms</subject><subject>Next-generation sequencing</subject><subject>Physiological aspects</subject><subject>Polyketides</subject><subject>Reagents</subject><subject>Regulation</subject><subject>rRNA 16S</subject><subject>Ruminants</subject><subject>Sequences</subject><subject>Signal transduction</subject><subject>Software</subject><subject>Structure-function relationships</subject><subject>Terpenes</subject><subject>Testing</subject><subject>Thermal cycling</subject><subject>Variance 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of Bacterial and Fungal Community Structure and Potential Function Analysis of Yak Feces before and after Weaning</title><author>Li, Yuanyuan ; Li, Xin ; Liu, Yanfeng ; Nie, Cunxi ; Chen, Cheng ; Niu, Junli ; Zhang, Wenju</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c453t-564b6056969d26ad522afc2940446ed73b971466b0a95e64aec5e6896868771e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Abundance</topic><topic>Adaptability</topic><topic>Amino acids</topic><topic>Bacteria</topic><topic>Bacteroidetes</topic><topic>Biodegradation</topic><topic>Bioinformatics</topic><topic>Biosynthesis</topic><topic>Biotechnology</topic><topic>Community structure</topic><topic>Composition</topic><topic>Data processing</topic><topic>Discriminant analysis</topic><topic>DNA polymerase</topic><topic>Environmental information</topic><topic>Fecal 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Li</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Comparison of Bacterial and Fungal Community Structure and Potential Function Analysis of Yak Feces before and after Weaning</atitle><jtitle>BioMed research international</jtitle><date>2022</date><risdate>2022</risdate><volume>2022</volume><issue>1</issue><spage>6297231</spage><epage>6297231</epage><pages>6297231-6297231</pages><issn>2314-6133</issn><eissn>2314-6141</eissn><abstract>Weaning is one of the most stressful periods in yak growth. However, the impact of weaning on microbial diversity, structure, and potential function of yak feces is not clear. In this study, 12 Xinjiang yaks aged 3, 4, 5, and 6 months old were selected to collect fresh feces before and after weaning. Through 16S rRNA and ITS high-throughput sequencing, the dynamic distribution and potential function of yak fecal, bacterial, and fungal communities in each month were revealed. The study found that the richness of fungi had a significant impact on weaning. At the phylum level, Firmicutes, Bacteroidetes, Ascomycota, and Basidiomycota, and at the genus level, 5-7N15, Oscillospira, Roseburia, Dorea, Preussia, Neoascochyta, Naganishia, and Sporormiella were enriched in yak feces of different months old. The abundance and proportion of bacteria Firmicutes, Bacteroidetes, 5-7N15, and fungi Mucoromyceta changed significantly before and after weaning. With the increase of months, Verrucomicrobia and Akkermansia have shown a downward trend. Through the prediction and analysis of fecal microbial function, it was found that at the level of primary pathways, weaning has a significant impact on cellular processes, environmental information processing, genetic information processing, metabolism, and organismal systems. At the level of secondary metabolic pathways, weaning has a significant impact on cell motility, signal transduction, folding, sorting and degradation, translation, amino acid metabolism, glycan biosynthesis and metabolism, metabolism of terpenoids and polyketides, and xenobiotics biodegradation and metabolism. In addition, by analyzing the differences in functional pathways and microbial composition between sample groups of different months, it was found that the differences in functional pathways were related to the abundance differences of some microorganisms. In general, the changes in the composition and structure of yak fecal microflora may reflect the adaptability of the intestinal microbiota.</abstract><cop>New York</cop><pub>Hindawi</pub><pmid>36082156</pmid><doi>10.1155/2022/6297231</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0002-6206-6879</orcidid><orcidid>https://orcid.org/0000-0002-0242-9332</orcidid><orcidid>https://orcid.org/0000-0002-3039-2389</orcidid><orcidid>https://orcid.org/0000-0003-0819-7509</orcidid><orcidid>https://orcid.org/0000-0003-3320-2840</orcidid><orcidid>https://orcid.org/0000-0001-6744-5029</orcidid><orcidid>https://orcid.org/0000-0002-5314-9904</orcidid><oa>free_for_read</oa></addata></record> |
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| subjects | Abundance Adaptability Amino acids Bacteria Bacteroidetes Biodegradation Bioinformatics Biosynthesis Biotechnology Community structure Composition Data processing Discriminant analysis DNA polymerase Environmental information Fecal microflora Feces Firmicutes Function analysis Fungi Genetic testing Glycan Infants Information processing Intestinal microflora Metabolic pathways Metabolism Microbiota Microbiota (Symbiotic organisms) Microorganisms Next-generation sequencing Physiological aspects Polyketides Reagents Regulation rRNA 16S Ruminants Sequences Signal transduction Software Structure-function relationships Terpenes Testing Thermal cycling Variance analysis Weaning Xenobiotics Yaks |
| title | Comparison of Bacterial and Fungal Community Structure and Potential Function Analysis of Yak Feces before and after Weaning |
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