Fine Mapping of qTGW7b , a Minor Effect QTL for Grain Weight in Rice ( Oryza sativa L.)
Grain weight is a key trait that determines rice quality and yield, and it is primarily controlled by quantitative trait loci (QTL). Recently, attention has been paid to minor QTLs. A minor effect QTL that controls grain weight was previously identified in a set of chromosomal fragment substitution...
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creator | Gu, Houwen Zhang, Kunming Gull, Sadia Chen, Chuyan Ran, Jinhui Zou, Bingyin Wang, Ping Liang, Guohua |
description | Grain weight is a key trait that determines rice quality and yield, and it is primarily controlled by quantitative trait loci (QTL). Recently, attention has been paid to minor QTLs. A minor effect QTL
that controls grain weight was previously identified in a set of chromosomal fragment substitution lines (CSSLs) derived from Nipponbare (NPB)/93-11. Compared to NPB, the single segment substitution line (SSSL) N83 carrying the
introgression exhibited an increase in grain length and width and a 4.5% increase in grain weight. Meanwhile, N83 was backcrossed to NPB to create a separating population,
, a QTL distinct from
, which was detected between markers G31 and G32. Twelve near-isogenic lines (NILs) from the BC
F
population and progeny of five NILs from the BC
F
population were genotyped and phenotyped, resulting in the fine mapping of the minor effect QTL
to the approximately 86.2-kb region between markers G72 and G32. Further sequence comparisons and expression analysis confirmed that five genes, including
,
,
,
, and
, were considered as the candidate genes underlying
. These results provide a crucial foundation for further cloning of
and molecular breeding design in rice. |
doi_str_mv | 10.3390/ijms23158296 |
format | Article |
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that controls grain weight was previously identified in a set of chromosomal fragment substitution lines (CSSLs) derived from Nipponbare (NPB)/93-11. Compared to NPB, the single segment substitution line (SSSL) N83 carrying the
introgression exhibited an increase in grain length and width and a 4.5% increase in grain weight. Meanwhile, N83 was backcrossed to NPB to create a separating population,
, a QTL distinct from
, which was detected between markers G31 and G32. Twelve near-isogenic lines (NILs) from the BC
F
population and progeny of five NILs from the BC
F
population were genotyped and phenotyped, resulting in the fine mapping of the minor effect QTL
to the approximately 86.2-kb region between markers G72 and G32. Further sequence comparisons and expression analysis confirmed that five genes, including
,
,
,
, and
, were considered as the candidate genes underlying
. These results provide a crucial foundation for further cloning of
and molecular breeding design in rice.</description><identifier>ISSN: 1422-0067</identifier><identifier>ISSN: 1661-6596</identifier><identifier>EISSN: 1422-0067</identifier><identifier>DOI: 10.3390/ijms23158296</identifier><identifier>PMID: 35955422</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Cell cycle ; Cell division ; Cell growth ; Chromosome Mapping ; Chromosomes ; Chromosomes, Plant - genetics ; Cloning ; Edible Grain - genetics ; Gene mapping ; Genes ; Genomics ; Genotype & phenotype ; Grain size ; Kinases ; Mapping ; Markers ; Oryza - genetics ; Oryza sativa ; Plant breeding ; Population ; Progeny ; Proteins ; Quantitative Trait Loci ; Regulation ; Rice ; Seeds ; Substitutes</subject><ispartof>International journal of molecular sciences, 2022-07, Vol.23 (15), p.8296</ispartof><rights>2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2022 by the authors. 2022</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c342t-dd81fbcebdc5def1cd903be9b936506008a60f9748ade31be420f794651f72153</citedby><cites>FETCH-LOGICAL-c342t-dd81fbcebdc5def1cd903be9b936506008a60f9748ade31be420f794651f72153</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9368273/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9368273/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,27922,27923,53789,53791</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35955422$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Gu, Houwen</creatorcontrib><creatorcontrib>Zhang, Kunming</creatorcontrib><creatorcontrib>Gull, Sadia</creatorcontrib><creatorcontrib>Chen, Chuyan</creatorcontrib><creatorcontrib>Ran, Jinhui</creatorcontrib><creatorcontrib>Zou, Bingyin</creatorcontrib><creatorcontrib>Wang, Ping</creatorcontrib><creatorcontrib>Liang, Guohua</creatorcontrib><title>Fine Mapping of qTGW7b , a Minor Effect QTL for Grain Weight in Rice ( Oryza sativa L.)</title><title>International journal of molecular sciences</title><addtitle>Int J Mol Sci</addtitle><description>Grain weight is a key trait that determines rice quality and yield, and it is primarily controlled by quantitative trait loci (QTL). Recently, attention has been paid to minor QTLs. A minor effect QTL
that controls grain weight was previously identified in a set of chromosomal fragment substitution lines (CSSLs) derived from Nipponbare (NPB)/93-11. Compared to NPB, the single segment substitution line (SSSL) N83 carrying the
introgression exhibited an increase in grain length and width and a 4.5% increase in grain weight. Meanwhile, N83 was backcrossed to NPB to create a separating population,
, a QTL distinct from
, which was detected between markers G31 and G32. Twelve near-isogenic lines (NILs) from the BC
F
population and progeny of five NILs from the BC
F
population were genotyped and phenotyped, resulting in the fine mapping of the minor effect QTL
to the approximately 86.2-kb region between markers G72 and G32. Further sequence comparisons and expression analysis confirmed that five genes, including
,
,
,
, and
, were considered as the candidate genes underlying
. These results provide a crucial foundation for further cloning of
and molecular breeding design in rice.</description><subject>Cell cycle</subject><subject>Cell division</subject><subject>Cell growth</subject><subject>Chromosome Mapping</subject><subject>Chromosomes</subject><subject>Chromosomes, Plant - genetics</subject><subject>Cloning</subject><subject>Edible Grain - genetics</subject><subject>Gene mapping</subject><subject>Genes</subject><subject>Genomics</subject><subject>Genotype & phenotype</subject><subject>Grain size</subject><subject>Kinases</subject><subject>Mapping</subject><subject>Markers</subject><subject>Oryza - genetics</subject><subject>Oryza sativa</subject><subject>Plant breeding</subject><subject>Population</subject><subject>Progeny</subject><subject>Proteins</subject><subject>Quantitative Trait Loci</subject><subject>Regulation</subject><subject>Rice</subject><subject>Seeds</subject><subject>Substitutes</subject><issn>1422-0067</issn><issn>1661-6596</issn><issn>1422-0067</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNpdkc1LAzEQxYMoflRvniXgRaGt-djsbi6ClFqFLUWp9Biy2aSmtLttsluof70p1VI9zQzvx5sZHgDXGHUp5ejBzhaeUMxSwuMjcI4jQjoIxcnxQX8GLryfIUQoYfwUnFHGGQviOZg821LDoVwubTmFlYGr8WCS5LANJRzasnKwb4xWNXwbZ9CEceCkLeFE2-lnDUP3bpWGd3DkNl8SelnbtYRZ9_4SnBg59_rqp7bAx3N_3HvpZKPBa-8p6ygakbpTFCk2udJ5oVihDVYFRzTXPOc0ZihGKJUxMjyJUlloinMdEWQSHsUMm4RgRlvgcee7bPKFLpQuayfnYunsQrqNqKQVf5XSfopptRZhQUoSGgzufgxctWq0r8XCeqXnc1nqqvGCJIjgNKYxD-jtP3RWNa4M720plEScB7AF2jtKucp7p83-GIzENjFxmFjAbw4f2MO_EdFvtC6PBQ</recordid><startdate>20220727</startdate><enddate>20220727</enddate><creator>Gu, Houwen</creator><creator>Zhang, Kunming</creator><creator>Gull, Sadia</creator><creator>Chen, Chuyan</creator><creator>Ran, Jinhui</creator><creator>Zou, Bingyin</creator><creator>Wang, Ping</creator><creator>Liang, Guohua</creator><general>MDPI AG</general><general>MDPI</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>K9.</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>MBDVC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20220727</creationdate><title>Fine Mapping of qTGW7b , a Minor Effect QTL for Grain Weight in Rice ( Oryza sativa L.)</title><author>Gu, Houwen ; Zhang, Kunming ; Gull, Sadia ; Chen, Chuyan ; Ran, Jinhui ; Zou, Bingyin ; Wang, Ping ; Liang, Guohua</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c342t-dd81fbcebdc5def1cd903be9b936506008a60f9748ade31be420f794651f72153</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Cell cycle</topic><topic>Cell division</topic><topic>Cell growth</topic><topic>Chromosome Mapping</topic><topic>Chromosomes</topic><topic>Chromosomes, Plant - genetics</topic><topic>Cloning</topic><topic>Edible Grain - genetics</topic><topic>Gene mapping</topic><topic>Genes</topic><topic>Genomics</topic><topic>Genotype & phenotype</topic><topic>Grain size</topic><topic>Kinases</topic><topic>Mapping</topic><topic>Markers</topic><topic>Oryza - genetics</topic><topic>Oryza sativa</topic><topic>Plant breeding</topic><topic>Population</topic><topic>Progeny</topic><topic>Proteins</topic><topic>Quantitative Trait Loci</topic><topic>Regulation</topic><topic>Rice</topic><topic>Seeds</topic><topic>Substitutes</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Gu, Houwen</creatorcontrib><creatorcontrib>Zhang, Kunming</creatorcontrib><creatorcontrib>Gull, Sadia</creatorcontrib><creatorcontrib>Chen, Chuyan</creatorcontrib><creatorcontrib>Ran, Jinhui</creatorcontrib><creatorcontrib>Zou, Bingyin</creatorcontrib><creatorcontrib>Wang, Ping</creatorcontrib><creatorcontrib>Liang, Guohua</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Research Library</collection><collection>Research Library (Corporate)</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>International journal of molecular sciences</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Gu, Houwen</au><au>Zhang, Kunming</au><au>Gull, Sadia</au><au>Chen, Chuyan</au><au>Ran, Jinhui</au><au>Zou, Bingyin</au><au>Wang, Ping</au><au>Liang, Guohua</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Fine Mapping of qTGW7b , a Minor Effect QTL for Grain Weight in Rice ( Oryza sativa L.)</atitle><jtitle>International journal of molecular sciences</jtitle><addtitle>Int J Mol Sci</addtitle><date>2022-07-27</date><risdate>2022</risdate><volume>23</volume><issue>15</issue><spage>8296</spage><pages>8296-</pages><issn>1422-0067</issn><issn>1661-6596</issn><eissn>1422-0067</eissn><abstract>Grain weight is a key trait that determines rice quality and yield, and it is primarily controlled by quantitative trait loci (QTL). Recently, attention has been paid to minor QTLs. A minor effect QTL
that controls grain weight was previously identified in a set of chromosomal fragment substitution lines (CSSLs) derived from Nipponbare (NPB)/93-11. Compared to NPB, the single segment substitution line (SSSL) N83 carrying the
introgression exhibited an increase in grain length and width and a 4.5% increase in grain weight. Meanwhile, N83 was backcrossed to NPB to create a separating population,
, a QTL distinct from
, which was detected between markers G31 and G32. Twelve near-isogenic lines (NILs) from the BC
F
population and progeny of five NILs from the BC
F
population were genotyped and phenotyped, resulting in the fine mapping of the minor effect QTL
to the approximately 86.2-kb region between markers G72 and G32. Further sequence comparisons and expression analysis confirmed that five genes, including
,
,
,
, and
, were considered as the candidate genes underlying
. These results provide a crucial foundation for further cloning of
and molecular breeding design in rice.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>35955422</pmid><doi>10.3390/ijms23158296</doi><oa>free_for_read</oa></addata></record> |
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source | MEDLINE; MDPI - Multidisciplinary Digital Publishing Institute; EZB-FREE-00999 freely available EZB journals; PubMed Central |
subjects | Cell cycle Cell division Cell growth Chromosome Mapping Chromosomes Chromosomes, Plant - genetics Cloning Edible Grain - genetics Gene mapping Genes Genomics Genotype & phenotype Grain size Kinases Mapping Markers Oryza - genetics Oryza sativa Plant breeding Population Progeny Proteins Quantitative Trait Loci Regulation Rice Seeds Substitutes |
title | Fine Mapping of qTGW7b , a Minor Effect QTL for Grain Weight in Rice ( Oryza sativa L.) |
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