Aquirufa lenticrescens sp. nov. and Aquirufa aurantiipilula sp. nov.: two new species of a lineage of widespread freshwater bacteria
Two bacterial strains, 9H-EGSE T and 15D-MOB T , were isolated from small freshwater habitats located near Salzburg, Austria. They showed the highest 16S rRNA sequence similarities of 100% and 99.9%, respectively, with type strains of species of the genus Aquirufa ( Bacteroidota ). Genome-based phyl...
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| Veröffentlicht in: | Archives of microbiology 2022-06, Vol.204 (6), p.356-356, Article 356 |
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| creator | Pitt, Alexandra Koll, Ulrike Schmidt, Johanna Neumann-Schaal, Meina Wolf, Jacqueline Krausz, Sophia Hahn, Martin W. |
| description | Two bacterial strains, 9H-EGSE
T
and 15D-MOB
T
, were isolated from small freshwater habitats located near Salzburg, Austria. They showed the highest 16S rRNA sequence similarities of 100% and 99.9%, respectively, with type strains of species of the genus
Aquirufa
(
Bacteroidota
). Genome-based phylogenetic reconstructions with 119 amino acid sequences assigned the new taxa to the two distinct branches of the genus
Aquirufa
. Whole-genome average nucleotide identities were calculated with all possible pairs belonging to the genus. Values between 75.4% and 88.6% revealed that the two new strains represent each a new species. Like all, so far described members of the genus, they grew aerobically and chemoorganotrophically, were rod-shaped, red-pigmented, and motile by gliding, and showed genome sizes of about 3 Mbp and G + C values of about 40%. They could be distinguished by some phenotypic and chemotaxonomic features from their nearest related species. Until now, strain 9H-EGSE
T
is the only one among the
Aquirufa
strains which contained traces of MK8 as respiratory quinone, and strain 15D-MOB
T
is the only one that formed tiny orange globules in liquid medium. The genome of strain 9H-EGSE
T
comprised genes for the complete light-harvesting rhodopsin / retinal system, in the case of 15D-MOB
T
genes predicted for a nitrous oxide reductase were present. For the two new species of the genus
Aquirufa
, we propose to establish the names
Aquirufa lenticrescens
for strain 9H-EGSE
T
(= JCM 34077
T
= CIP 111926
T
) and
Aquirufa aurantiipilula
for strain 15D-MOB
T
(= JCM 34078
T
= CIP 111925
T
). |
| doi_str_mv | 10.1007/s00203-022-02950-6 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_9163014</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2673357115</sourcerecordid><originalsourceid>FETCH-LOGICAL-c404t-cf4250e2bf84661fbcb5c21813f999826699168998fe85f478be64316bca075e3</originalsourceid><addsrcrecordid>eNp9kU1vEzEQhi0EoiHwBzggS1y4bPDH2mtzQKoqvqRKXEDiZnmdcepq403t3Ua988OZkBI-Dhwse-xn3vHMS8hzzlacse51ZUww2TAhcFnFGv2ALHgrMezEt4dkwSQTjbFSnpEntV4zxoUx5jE5k0qr1lq2IN_Pb-ZU5ujpAHlKoUANkCutuxXN4-2K-rymJ8bPxSOVdmmYB3-C3tBpP9IMe7yBkKDSMVJUTBn8Bg7BPq2h7gr4NY1Y4mrvJyi09wG35J-SR9EPFZ7d70vy9f27Lxcfm8vPHz5dnF82oWXt1ITYCsVA9NG0WvPYh14FwQ2X0VprhNbWcm3wGMGo2HamB91KrvvgWadALsnbo-5u7rewxkan4ge3K2nry50bfXJ_v-R05TbjrUNZyXCyS_LqXqCMNzPUyW0TzmsYfIZxrk7oTkrVca4QffkPej3OJWN7B0q0RiphkRJHKpSx1gLx9BnO3MFkdzTZocnup8lOY9KLP9s4pfxyFQF5BHDkKW-g_K79H9kfZWiz0Q</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2672483529</pqid></control><display><type>article</type><title>Aquirufa lenticrescens sp. nov. and Aquirufa aurantiipilula sp. nov.: two new species of a lineage of widespread freshwater bacteria</title><source>SpringerNature Journals</source><creator>Pitt, Alexandra ; Koll, Ulrike ; Schmidt, Johanna ; Neumann-Schaal, Meina ; Wolf, Jacqueline ; Krausz, Sophia ; Hahn, Martin W.</creator><creatorcontrib>Pitt, Alexandra ; Koll, Ulrike ; Schmidt, Johanna ; Neumann-Schaal, Meina ; Wolf, Jacqueline ; Krausz, Sophia ; Hahn, Martin W.</creatorcontrib><description>Two bacterial strains, 9H-EGSE
T
and 15D-MOB
T
, were isolated from small freshwater habitats located near Salzburg, Austria. They showed the highest 16S rRNA sequence similarities of 100% and 99.9%, respectively, with type strains of species of the genus
Aquirufa
(
Bacteroidota
). Genome-based phylogenetic reconstructions with 119 amino acid sequences assigned the new taxa to the two distinct branches of the genus
Aquirufa
. Whole-genome average nucleotide identities were calculated with all possible pairs belonging to the genus. Values between 75.4% and 88.6% revealed that the two new strains represent each a new species. Like all, so far described members of the genus, they grew aerobically and chemoorganotrophically, were rod-shaped, red-pigmented, and motile by gliding, and showed genome sizes of about 3 Mbp and G + C values of about 40%. They could be distinguished by some phenotypic and chemotaxonomic features from their nearest related species. Until now, strain 9H-EGSE
T
is the only one among the
Aquirufa
strains which contained traces of MK8 as respiratory quinone, and strain 15D-MOB
T
is the only one that formed tiny orange globules in liquid medium. The genome of strain 9H-EGSE
T
comprised genes for the complete light-harvesting rhodopsin / retinal system, in the case of 15D-MOB
T
genes predicted for a nitrous oxide reductase were present. For the two new species of the genus
Aquirufa
, we propose to establish the names
Aquirufa lenticrescens
for strain 9H-EGSE
T
(= JCM 34077
T
= CIP 111926
T
) and
Aquirufa aurantiipilula
for strain 15D-MOB
T
(= JCM 34078
T
= CIP 111925
T
).</description><identifier>ISSN: 0302-8933</identifier><identifier>EISSN: 1432-072X</identifier><identifier>DOI: 10.1007/s00203-022-02950-6</identifier><identifier>PMID: 35654990</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Amino acids ; Aquatic habitats ; Biochemistry ; Biomedical and Life Sciences ; Biotechnology ; Cell Biology ; Ecology ; Freshwater environments ; Genes ; Genomes ; Gliding ; Globules ; Life Sciences ; Microbial Ecology ; Microbiology ; New species ; New taxa ; Nitrous oxide ; Nucleotides ; Original Paper ; Phylogeny ; Physical characteristics ; Quinones ; Reductases ; Rhodopsin ; rRNA 16S ; Strains (organisms)</subject><ispartof>Archives of microbiology, 2022-06, Vol.204 (6), p.356-356, Article 356</ispartof><rights>The Author(s) 2022</rights><rights>2022. The Author(s).</rights><rights>The Author(s) 2022. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c404t-cf4250e2bf84661fbcb5c21813f999826699168998fe85f478be64316bca075e3</citedby><cites>FETCH-LOGICAL-c404t-cf4250e2bf84661fbcb5c21813f999826699168998fe85f478be64316bca075e3</cites><orcidid>0000-0002-4347-7082 ; 0000-0003-0501-2556 ; 0000-0002-9671-5398 ; 0000-0002-1641-019X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00203-022-02950-6$$EPDF$$P50$$Gspringer$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00203-022-02950-6$$EHTML$$P50$$Gspringer$$Hfree_for_read</linktohtml><link.rule.ids>230,315,781,785,886,27929,27930,41493,42562,51324</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35654990$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Pitt, Alexandra</creatorcontrib><creatorcontrib>Koll, Ulrike</creatorcontrib><creatorcontrib>Schmidt, Johanna</creatorcontrib><creatorcontrib>Neumann-Schaal, Meina</creatorcontrib><creatorcontrib>Wolf, Jacqueline</creatorcontrib><creatorcontrib>Krausz, Sophia</creatorcontrib><creatorcontrib>Hahn, Martin W.</creatorcontrib><title>Aquirufa lenticrescens sp. nov. and Aquirufa aurantiipilula sp. nov.: two new species of a lineage of widespread freshwater bacteria</title><title>Archives of microbiology</title><addtitle>Arch Microbiol</addtitle><addtitle>Arch Microbiol</addtitle><description>Two bacterial strains, 9H-EGSE
T
and 15D-MOB
T
, were isolated from small freshwater habitats located near Salzburg, Austria. They showed the highest 16S rRNA sequence similarities of 100% and 99.9%, respectively, with type strains of species of the genus
Aquirufa
(
Bacteroidota
). Genome-based phylogenetic reconstructions with 119 amino acid sequences assigned the new taxa to the two distinct branches of the genus
Aquirufa
. Whole-genome average nucleotide identities were calculated with all possible pairs belonging to the genus. Values between 75.4% and 88.6% revealed that the two new strains represent each a new species. Like all, so far described members of the genus, they grew aerobically and chemoorganotrophically, were rod-shaped, red-pigmented, and motile by gliding, and showed genome sizes of about 3 Mbp and G + C values of about 40%. They could be distinguished by some phenotypic and chemotaxonomic features from their nearest related species. Until now, strain 9H-EGSE
T
is the only one among the
Aquirufa
strains which contained traces of MK8 as respiratory quinone, and strain 15D-MOB
T
is the only one that formed tiny orange globules in liquid medium. The genome of strain 9H-EGSE
T
comprised genes for the complete light-harvesting rhodopsin / retinal system, in the case of 15D-MOB
T
genes predicted for a nitrous oxide reductase were present. For the two new species of the genus
Aquirufa
, we propose to establish the names
Aquirufa lenticrescens
for strain 9H-EGSE
T
(= JCM 34077
T
= CIP 111926
T
) and
Aquirufa aurantiipilula
for strain 15D-MOB
T
(= JCM 34078
T
= CIP 111925
T
).</description><subject>Amino acids</subject><subject>Aquatic habitats</subject><subject>Biochemistry</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Cell Biology</subject><subject>Ecology</subject><subject>Freshwater environments</subject><subject>Genes</subject><subject>Genomes</subject><subject>Gliding</subject><subject>Globules</subject><subject>Life Sciences</subject><subject>Microbial Ecology</subject><subject>Microbiology</subject><subject>New species</subject><subject>New taxa</subject><subject>Nitrous oxide</subject><subject>Nucleotides</subject><subject>Original Paper</subject><subject>Phylogeny</subject><subject>Physical characteristics</subject><subject>Quinones</subject><subject>Reductases</subject><subject>Rhodopsin</subject><subject>rRNA 16S</subject><subject>Strains (organisms)</subject><issn>0302-8933</issn><issn>1432-072X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kU1vEzEQhi0EoiHwBzggS1y4bPDH2mtzQKoqvqRKXEDiZnmdcepq403t3Ua988OZkBI-Dhwse-xn3vHMS8hzzlacse51ZUww2TAhcFnFGv2ALHgrMezEt4dkwSQTjbFSnpEntV4zxoUx5jE5k0qr1lq2IN_Pb-ZU5ujpAHlKoUANkCutuxXN4-2K-rymJ8bPxSOVdmmYB3-C3tBpP9IMe7yBkKDSMVJUTBn8Bg7BPq2h7gr4NY1Y4mrvJyi09wG35J-SR9EPFZ7d70vy9f27Lxcfm8vPHz5dnF82oWXt1ITYCsVA9NG0WvPYh14FwQ2X0VprhNbWcm3wGMGo2HamB91KrvvgWadALsnbo-5u7rewxkan4ge3K2nry50bfXJ_v-R05TbjrUNZyXCyS_LqXqCMNzPUyW0TzmsYfIZxrk7oTkrVca4QffkPej3OJWN7B0q0RiphkRJHKpSx1gLx9BnO3MFkdzTZocnup8lOY9KLP9s4pfxyFQF5BHDkKW-g_K79H9kfZWiz0Q</recordid><startdate>20220601</startdate><enddate>20220601</enddate><creator>Pitt, Alexandra</creator><creator>Koll, Ulrike</creator><creator>Schmidt, Johanna</creator><creator>Neumann-Schaal, Meina</creator><creator>Wolf, Jacqueline</creator><creator>Krausz, Sophia</creator><creator>Hahn, Martin W.</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><scope>C6C</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-4347-7082</orcidid><orcidid>https://orcid.org/0000-0003-0501-2556</orcidid><orcidid>https://orcid.org/0000-0002-9671-5398</orcidid><orcidid>https://orcid.org/0000-0002-1641-019X</orcidid></search><sort><creationdate>20220601</creationdate><title>Aquirufa lenticrescens sp. nov. and Aquirufa aurantiipilula sp. nov.: two new species of a lineage of widespread freshwater bacteria</title><author>Pitt, Alexandra ; Koll, Ulrike ; Schmidt, Johanna ; Neumann-Schaal, Meina ; Wolf, Jacqueline ; Krausz, Sophia ; Hahn, Martin W.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c404t-cf4250e2bf84661fbcb5c21813f999826699168998fe85f478be64316bca075e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Amino acids</topic><topic>Aquatic habitats</topic><topic>Biochemistry</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Cell Biology</topic><topic>Ecology</topic><topic>Freshwater environments</topic><topic>Genes</topic><topic>Genomes</topic><topic>Gliding</topic><topic>Globules</topic><topic>Life Sciences</topic><topic>Microbial Ecology</topic><topic>Microbiology</topic><topic>New species</topic><topic>New taxa</topic><topic>Nitrous oxide</topic><topic>Nucleotides</topic><topic>Original Paper</topic><topic>Phylogeny</topic><topic>Physical characteristics</topic><topic>Quinones</topic><topic>Reductases</topic><topic>Rhodopsin</topic><topic>rRNA 16S</topic><topic>Strains (organisms)</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Pitt, Alexandra</creatorcontrib><creatorcontrib>Koll, Ulrike</creatorcontrib><creatorcontrib>Schmidt, Johanna</creatorcontrib><creatorcontrib>Neumann-Schaal, Meina</creatorcontrib><creatorcontrib>Wolf, Jacqueline</creatorcontrib><creatorcontrib>Krausz, Sophia</creatorcontrib><creatorcontrib>Hahn, Martin W.</creatorcontrib><collection>Springer Nature OA/Free Journals</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Archives of microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Pitt, Alexandra</au><au>Koll, Ulrike</au><au>Schmidt, Johanna</au><au>Neumann-Schaal, Meina</au><au>Wolf, Jacqueline</au><au>Krausz, Sophia</au><au>Hahn, Martin W.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Aquirufa lenticrescens sp. nov. and Aquirufa aurantiipilula sp. nov.: two new species of a lineage of widespread freshwater bacteria</atitle><jtitle>Archives of microbiology</jtitle><stitle>Arch Microbiol</stitle><addtitle>Arch Microbiol</addtitle><date>2022-06-01</date><risdate>2022</risdate><volume>204</volume><issue>6</issue><spage>356</spage><epage>356</epage><pages>356-356</pages><artnum>356</artnum><issn>0302-8933</issn><eissn>1432-072X</eissn><abstract>Two bacterial strains, 9H-EGSE
T
and 15D-MOB
T
, were isolated from small freshwater habitats located near Salzburg, Austria. They showed the highest 16S rRNA sequence similarities of 100% and 99.9%, respectively, with type strains of species of the genus
Aquirufa
(
Bacteroidota
). Genome-based phylogenetic reconstructions with 119 amino acid sequences assigned the new taxa to the two distinct branches of the genus
Aquirufa
. Whole-genome average nucleotide identities were calculated with all possible pairs belonging to the genus. Values between 75.4% and 88.6% revealed that the two new strains represent each a new species. Like all, so far described members of the genus, they grew aerobically and chemoorganotrophically, were rod-shaped, red-pigmented, and motile by gliding, and showed genome sizes of about 3 Mbp and G + C values of about 40%. They could be distinguished by some phenotypic and chemotaxonomic features from their nearest related species. Until now, strain 9H-EGSE
T
is the only one among the
Aquirufa
strains which contained traces of MK8 as respiratory quinone, and strain 15D-MOB
T
is the only one that formed tiny orange globules in liquid medium. The genome of strain 9H-EGSE
T
comprised genes for the complete light-harvesting rhodopsin / retinal system, in the case of 15D-MOB
T
genes predicted for a nitrous oxide reductase were present. For the two new species of the genus
Aquirufa
, we propose to establish the names
Aquirufa lenticrescens
for strain 9H-EGSE
T
(= JCM 34077
T
= CIP 111926
T
) and
Aquirufa aurantiipilula
for strain 15D-MOB
T
(= JCM 34078
T
= CIP 111925
T
).</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>35654990</pmid><doi>10.1007/s00203-022-02950-6</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0002-4347-7082</orcidid><orcidid>https://orcid.org/0000-0003-0501-2556</orcidid><orcidid>https://orcid.org/0000-0002-9671-5398</orcidid><orcidid>https://orcid.org/0000-0002-1641-019X</orcidid><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0302-8933 |
| ispartof | Archives of microbiology, 2022-06, Vol.204 (6), p.356-356, Article 356 |
| issn | 0302-8933 1432-072X |
| language | eng |
| recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_9163014 |
| source | SpringerNature Journals |
| subjects | Amino acids Aquatic habitats Biochemistry Biomedical and Life Sciences Biotechnology Cell Biology Ecology Freshwater environments Genes Genomes Gliding Globules Life Sciences Microbial Ecology Microbiology New species New taxa Nitrous oxide Nucleotides Original Paper Phylogeny Physical characteristics Quinones Reductases Rhodopsin rRNA 16S Strains (organisms) |
| title | Aquirufa lenticrescens sp. nov. and Aquirufa aurantiipilula sp. nov.: two new species of a lineage of widespread freshwater bacteria |
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