Short-Term Responses of Soil Microbial Communities to Changes in Air Temperature, Soil Moisture and UV Radiation
We analyzed the effects on a soil microbial community of short-term alterations in air temperature, soil moisture and ultraviolet radiation and assessed the role of invertebrates (species ) in modulating the community's response to these factors. The reference soil, Lufa 2.2, was incubated for...
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Veröffentlicht in: | Genes 2022-05, Vol.13 (5), p.850 |
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description | We analyzed the effects on a soil microbial community of short-term alterations in air temperature, soil moisture and ultraviolet radiation and assessed the role of invertebrates (species
) in modulating the community's response to these factors. The reference soil, Lufa 2.2, was incubated for 48 h, with and without invertebrates, under the following conditions: standard (20 °C + 50% water holding capacity (WHC)); increased air temperature (15-25 °C or 20-30 °C + 50% WHC); flood (20 °C + 75% WHC); drought (20 °C + 25% WHC); and ultraviolet radiation (UV) (20 °C + 50% WHC + UV). BIOLOG EcoPlates and 16S rDNA sequencing (Illumina) were used to assess the microbial community's physiological profile and the bacterial community's structure, respectively. The bacterial abundance (estimated by 16S rDNA qPCR) did not change. Most of the conditions led to an increase in microbial activity and a decrease in diversity. The structure of the bacterial community was particularly affected by higher air temperatures (20-30 °C, without
) and floods (with
). Effects were observed at the class, genera and OTU levels. The presence of invertebrates mostly resulted in the attenuation of the observed effects, highlighting the importance of considering microbiome-invertebrate interactions. Considering future climate changes, the effects described here raise concern. This study provides fundamental knowledge to develop effective strategies to mitigate these negative outcomes. However, long-term studies integrating biotic and abiotic factors are needed. |
doi_str_mv | 10.3390/genes13050850 |
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) in modulating the community's response to these factors. The reference soil, Lufa 2.2, was incubated for 48 h, with and without invertebrates, under the following conditions: standard (20 °C + 50% water holding capacity (WHC)); increased air temperature (15-25 °C or 20-30 °C + 50% WHC); flood (20 °C + 75% WHC); drought (20 °C + 25% WHC); and ultraviolet radiation (UV) (20 °C + 50% WHC + UV). BIOLOG EcoPlates and 16S rDNA sequencing (Illumina) were used to assess the microbial community's physiological profile and the bacterial community's structure, respectively. The bacterial abundance (estimated by 16S rDNA qPCR) did not change. Most of the conditions led to an increase in microbial activity and a decrease in diversity. The structure of the bacterial community was particularly affected by higher air temperatures (20-30 °C, without
) and floods (with
). Effects were observed at the class, genera and OTU levels. The presence of invertebrates mostly resulted in the attenuation of the observed effects, highlighting the importance of considering microbiome-invertebrate interactions. Considering future climate changes, the effects described here raise concern. This study provides fundamental knowledge to develop effective strategies to mitigate these negative outcomes. However, long-term studies integrating biotic and abiotic factors are needed.</description><identifier>ISSN: 2073-4425</identifier><identifier>EISSN: 2073-4425</identifier><identifier>DOI: 10.3390/genes13050850</identifier><identifier>PMID: 35627235</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Abiotic factors ; Air temperature ; Bacteria ; Carbon ; Climate change ; Drought ; Genetics ; Invertebrates ; Life Sciences ; Microbiomes ; Moisture content ; Rain ; rRNA 16S ; Soil microorganisms ; Soil moisture ; Soil temperature ; Terrestrial ecosystems ; Ultraviolet radiation</subject><ispartof>Genes, 2022-05, Vol.13 (5), p.850</ispartof><rights>2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><rights>2022 by the authors. 2022</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c478t-b67f5e16ec4c844884f430591b52cfbd4a70b7149494b6b587368a63f3cdd6773</citedby><cites>FETCH-LOGICAL-c478t-b67f5e16ec4c844884f430591b52cfbd4a70b7149494b6b587368a63f3cdd6773</cites><orcidid>0000-0002-0494-4266</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9142034/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9142034/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35627235$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://hal.science/hal-04060807$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Silva, Isabel</creatorcontrib><creatorcontrib>Alves, Marta</creatorcontrib><creatorcontrib>Malheiro, Catarina</creatorcontrib><creatorcontrib>Silva, Ana Rita R</creatorcontrib><creatorcontrib>Loureiro, Susana</creatorcontrib><creatorcontrib>Henriques, Isabel</creatorcontrib><creatorcontrib>González-Alcaraz, M Nazaret</creatorcontrib><title>Short-Term Responses of Soil Microbial Communities to Changes in Air Temperature, Soil Moisture and UV Radiation</title><title>Genes</title><addtitle>Genes (Basel)</addtitle><description>We analyzed the effects on a soil microbial community of short-term alterations in air temperature, soil moisture and ultraviolet radiation and assessed the role of invertebrates (species
) in modulating the community's response to these factors. The reference soil, Lufa 2.2, was incubated for 48 h, with and without invertebrates, under the following conditions: standard (20 °C + 50% water holding capacity (WHC)); increased air temperature (15-25 °C or 20-30 °C + 50% WHC); flood (20 °C + 75% WHC); drought (20 °C + 25% WHC); and ultraviolet radiation (UV) (20 °C + 50% WHC + UV). BIOLOG EcoPlates and 16S rDNA sequencing (Illumina) were used to assess the microbial community's physiological profile and the bacterial community's structure, respectively. The bacterial abundance (estimated by 16S rDNA qPCR) did not change. Most of the conditions led to an increase in microbial activity and a decrease in diversity. The structure of the bacterial community was particularly affected by higher air temperatures (20-30 °C, without
) and floods (with
). Effects were observed at the class, genera and OTU levels. The presence of invertebrates mostly resulted in the attenuation of the observed effects, highlighting the importance of considering microbiome-invertebrate interactions. Considering future climate changes, the effects described here raise concern. This study provides fundamental knowledge to develop effective strategies to mitigate these negative outcomes. However, long-term studies integrating biotic and abiotic factors are needed.</description><subject>Abiotic factors</subject><subject>Air temperature</subject><subject>Bacteria</subject><subject>Carbon</subject><subject>Climate change</subject><subject>Drought</subject><subject>Genetics</subject><subject>Invertebrates</subject><subject>Life Sciences</subject><subject>Microbiomes</subject><subject>Moisture content</subject><subject>Rain</subject><subject>rRNA 16S</subject><subject>Soil microorganisms</subject><subject>Soil moisture</subject><subject>Soil temperature</subject><subject>Terrestrial ecosystems</subject><subject>Ultraviolet radiation</subject><issn>2073-4425</issn><issn>2073-4425</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>BENPR</sourceid><recordid>eNpdkU1r3DAQhkVpaEKaY69F0EsDdaNveS-FZWmbwIZAsulVyPZ4V8GWXMkO9N9XZjchiXTQSPPMaGZehD5R8p3zBbnYgodEOZGklOQdOmFE80IIJt-_sI_RWUoPJC9BGCHyAzrmUjHNuDxBw90uxLHYQOzxLaQh-AQJhxbfBdfha1fHUDnb4VXo-8m70WXvGPBqZ_02m87jpYt4A_0A0Y5ThG-HyODSfMXWN_j-D761jbOjC_4jOmptl-DscJ6i-18_N6vLYn3z-2q1XBe10OVYVEq3EqiCWtSlEGUpWpH7XNBKsrqtGmE1qTQVi7wrVclSc1VaxVteN43Smp-iH_u8w1T10NTgx2g7M0TX2_jPBOvMa493O7MNj2ZBBSNc5ATn-wS7N2GXy7WZ3_I4FSmJfqSZ_Xr4LIa_E6TR9C7V0HXWQ5iSYUpTpnNZc11f3qAPYYo-j2KmCFVMUJKpYk_l-acUoX2ugBIzS29eSZ_5zy-7faafhOb_AXucqT4</recordid><startdate>20220510</startdate><enddate>20220510</enddate><creator>Silva, Isabel</creator><creator>Alves, Marta</creator><creator>Malheiro, Catarina</creator><creator>Silva, Ana Rita R</creator><creator>Loureiro, Susana</creator><creator>Henriques, Isabel</creator><creator>González-Alcaraz, M Nazaret</creator><general>MDPI AG</general><general>MDPI</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M7P</scope><scope>P64</scope><scope>PHGZM</scope><scope>PHGZT</scope><scope>PIMPY</scope><scope>PKEHL</scope><scope>PQEST</scope><scope>PQGLB</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><scope>1XC</scope><scope>VOOES</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-0494-4266</orcidid></search><sort><creationdate>20220510</creationdate><title>Short-Term Responses of Soil Microbial Communities to Changes in Air Temperature, Soil Moisture and UV Radiation</title><author>Silva, Isabel ; Alves, Marta ; Malheiro, Catarina ; Silva, Ana Rita R ; Loureiro, Susana ; Henriques, Isabel ; González-Alcaraz, M Nazaret</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c478t-b67f5e16ec4c844884f430591b52cfbd4a70b7149494b6b587368a63f3cdd6773</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Abiotic factors</topic><topic>Air temperature</topic><topic>Bacteria</topic><topic>Carbon</topic><topic>Climate change</topic><topic>Drought</topic><topic>Genetics</topic><topic>Invertebrates</topic><topic>Life Sciences</topic><topic>Microbiomes</topic><topic>Moisture content</topic><topic>Rain</topic><topic>rRNA 16S</topic><topic>Soil microorganisms</topic><topic>Soil moisture</topic><topic>Soil temperature</topic><topic>Terrestrial ecosystems</topic><topic>Ultraviolet radiation</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Silva, Isabel</creatorcontrib><creatorcontrib>Alves, Marta</creatorcontrib><creatorcontrib>Malheiro, Catarina</creatorcontrib><creatorcontrib>Silva, Ana Rita R</creatorcontrib><creatorcontrib>Loureiro, Susana</creatorcontrib><creatorcontrib>Henriques, Isabel</creatorcontrib><creatorcontrib>González-Alcaraz, M Nazaret</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest Central (New)</collection><collection>ProQuest One Academic (New)</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Middle East (New)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Applied & Life Sciences</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>Hyper Article en Ligne (HAL)</collection><collection>Hyper Article en Ligne (HAL) (Open Access)</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Genes</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Silva, Isabel</au><au>Alves, Marta</au><au>Malheiro, Catarina</au><au>Silva, Ana Rita R</au><au>Loureiro, Susana</au><au>Henriques, Isabel</au><au>González-Alcaraz, M Nazaret</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Short-Term Responses of Soil Microbial Communities to Changes in Air Temperature, Soil Moisture and UV Radiation</atitle><jtitle>Genes</jtitle><addtitle>Genes (Basel)</addtitle><date>2022-05-10</date><risdate>2022</risdate><volume>13</volume><issue>5</issue><spage>850</spage><pages>850-</pages><issn>2073-4425</issn><eissn>2073-4425</eissn><abstract>We analyzed the effects on a soil microbial community of short-term alterations in air temperature, soil moisture and ultraviolet radiation and assessed the role of invertebrates (species
) in modulating the community's response to these factors. The reference soil, Lufa 2.2, was incubated for 48 h, with and without invertebrates, under the following conditions: standard (20 °C + 50% water holding capacity (WHC)); increased air temperature (15-25 °C or 20-30 °C + 50% WHC); flood (20 °C + 75% WHC); drought (20 °C + 25% WHC); and ultraviolet radiation (UV) (20 °C + 50% WHC + UV). BIOLOG EcoPlates and 16S rDNA sequencing (Illumina) were used to assess the microbial community's physiological profile and the bacterial community's structure, respectively. The bacterial abundance (estimated by 16S rDNA qPCR) did not change. Most of the conditions led to an increase in microbial activity and a decrease in diversity. The structure of the bacterial community was particularly affected by higher air temperatures (20-30 °C, without
) and floods (with
). Effects were observed at the class, genera and OTU levels. The presence of invertebrates mostly resulted in the attenuation of the observed effects, highlighting the importance of considering microbiome-invertebrate interactions. Considering future climate changes, the effects described here raise concern. This study provides fundamental knowledge to develop effective strategies to mitigate these negative outcomes. However, long-term studies integrating biotic and abiotic factors are needed.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>35627235</pmid><doi>10.3390/genes13050850</doi><orcidid>https://orcid.org/0000-0002-0494-4266</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Abiotic factors Air temperature Bacteria Carbon Climate change Drought Genetics Invertebrates Life Sciences Microbiomes Moisture content Rain rRNA 16S Soil microorganisms Soil moisture Soil temperature Terrestrial ecosystems Ultraviolet radiation |
title | Short-Term Responses of Soil Microbial Communities to Changes in Air Temperature, Soil Moisture and UV Radiation |
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