Phosphoproteomics Unravel HBV Triggered Rewiring of Host Phosphosignaling Events
Hepatitis B virus (HBV) infection persists as a major global health problem despite the availability of HBV vaccines for disease prevention. However, vaccination rates remains low in some regions of the world, driving the need for novel strategies to minimise infections and prevent disease progressi...
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creator | Lim, ZiJie Mohd-Ismail, Nur Khairiah Binte Png, Evelyn Sze, Ching Wooen Lin, Qifeng Hong, Wanjin Lim, Seng Gee Tan, Yee-Joo Gunaratne, Jayantha |
description | Hepatitis B virus (HBV) infection persists as a major global health problem despite the availability of HBV vaccines for disease prevention. However, vaccination rates remains low in some regions of the world, driving the need for novel strategies to minimise infections and prevent disease progression. Thus, understanding of perturbed molecular signaling events during early phases of HBV infection is required. Phosphosignaling is known to be involved in the HBV infection processes, yet systems-level changes in phosphosignaling pathways in the host during infection remain unclear. To this end, we performed phosphoproteome profiling on HBV-infected HepG2-NTCP cells. Our results showed that HBV infection drastically altered the host phosphoproteome and its associated proteins, including kinases. Computational analysis of this phosphoproteome revealed dysregulation of the pathways involved in immune responses, cell cycle processes, and RNA processing during HBV infection. Kinase Substrate Enrichment Analysis (KSEA) identified the dysregulated activities of important kinases, including those from CMGC (CDK, MAPK, GSK, and CLK), AGC (protein kinase A, G, and C), and TK (Tyrosine Kinase) families. Of note, the inhibition of CLKs significantly reduced HBV infection in HepG2-NTCP cells. In all, our study unravelled the aberrated phosphosignaling pathways and the associated kinases, presenting potential entry points for developing novel therapeutic strategies for HBV treatment. |
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However, vaccination rates remains low in some regions of the world, driving the need for novel strategies to minimise infections and prevent disease progression. Thus, understanding of perturbed molecular signaling events during early phases of HBV infection is required. Phosphosignaling is known to be involved in the HBV infection processes, yet systems-level changes in phosphosignaling pathways in the host during infection remain unclear. To this end, we performed phosphoproteome profiling on HBV-infected HepG2-NTCP cells. Our results showed that HBV infection drastically altered the host phosphoproteome and its associated proteins, including kinases. Computational analysis of this phosphoproteome revealed dysregulation of the pathways involved in immune responses, cell cycle processes, and RNA processing during HBV infection. Kinase Substrate Enrichment Analysis (KSEA) identified the dysregulated activities of important kinases, including those from CMGC (CDK, MAPK, GSK, and CLK), AGC (protein kinase A, G, and C), and TK (Tyrosine Kinase) families. Of note, the inhibition of CLKs significantly reduced HBV infection in HepG2-NTCP cells. In all, our study unravelled the aberrated phosphosignaling pathways and the associated kinases, presenting potential entry points for developing novel therapeutic strategies for HBV treatment.</description><identifier>ISSN: 1422-0067</identifier><identifier>ISSN: 1661-6596</identifier><identifier>EISSN: 1422-0067</identifier><identifier>DOI: 10.3390/ijms23095127</identifier><identifier>PMID: 35563518</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Antigens ; Cell cycle ; Computer applications ; Disease control ; Genomes ; Granulocytes ; Hep G2 Cells ; Hepatitis B ; Hepatitis B virus - genetics ; Hepatocytes - metabolism ; Humans ; Immune response ; Immune system ; Infections ; Kinases ; Liver cancer ; Localization ; MAP kinase ; Organic Anion Transporters, Sodium-Dependent - metabolism ; Phosphorylation ; Protein kinase A ; Protein-tyrosine kinase ; Proteins ; Public health ; RNA processing ; Symporters - metabolism ; Tyrosine ; Viral infections</subject><ispartof>International journal of molecular sciences, 2022-05, Vol.23 (9), p.5127</ispartof><rights>2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2022 by the authors. 2022</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c412t-d57c21883c834cda8f56a5ddf2ca113df920bd0709db3569dda48b39d13ba1883</citedby><cites>FETCH-LOGICAL-c412t-d57c21883c834cda8f56a5ddf2ca113df920bd0709db3569dda48b39d13ba1883</cites><orcidid>0000-0002-2278-4497 ; 0000-0002-3700-7586 ; 0000-0002-1501-8700 ; 0000-0003-0913-7567</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9104152/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9104152/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,27903,27904,53769,53771</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35563518$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lim, ZiJie</creatorcontrib><creatorcontrib>Mohd-Ismail, Nur Khairiah Binte</creatorcontrib><creatorcontrib>Png, Evelyn</creatorcontrib><creatorcontrib>Sze, Ching Wooen</creatorcontrib><creatorcontrib>Lin, Qifeng</creatorcontrib><creatorcontrib>Hong, Wanjin</creatorcontrib><creatorcontrib>Lim, Seng Gee</creatorcontrib><creatorcontrib>Tan, Yee-Joo</creatorcontrib><creatorcontrib>Gunaratne, Jayantha</creatorcontrib><title>Phosphoproteomics Unravel HBV Triggered Rewiring of Host Phosphosignaling Events</title><title>International journal of molecular sciences</title><addtitle>Int J Mol Sci</addtitle><description>Hepatitis B virus (HBV) infection persists as a major global health problem despite the availability of HBV vaccines for disease prevention. However, vaccination rates remains low in some regions of the world, driving the need for novel strategies to minimise infections and prevent disease progression. Thus, understanding of perturbed molecular signaling events during early phases of HBV infection is required. Phosphosignaling is known to be involved in the HBV infection processes, yet systems-level changes in phosphosignaling pathways in the host during infection remain unclear. To this end, we performed phosphoproteome profiling on HBV-infected HepG2-NTCP cells. Our results showed that HBV infection drastically altered the host phosphoproteome and its associated proteins, including kinases. Computational analysis of this phosphoproteome revealed dysregulation of the pathways involved in immune responses, cell cycle processes, and RNA processing during HBV infection. Kinase Substrate Enrichment Analysis (KSEA) identified the dysregulated activities of important kinases, including those from CMGC (CDK, MAPK, GSK, and CLK), AGC (protein kinase A, G, and C), and TK (Tyrosine Kinase) families. Of note, the inhibition of CLKs significantly reduced HBV infection in HepG2-NTCP cells. In all, our study unravelled the aberrated phosphosignaling pathways and the associated kinases, presenting potential entry points for developing novel therapeutic strategies for HBV treatment.</description><subject>Antigens</subject><subject>Cell cycle</subject><subject>Computer applications</subject><subject>Disease control</subject><subject>Genomes</subject><subject>Granulocytes</subject><subject>Hep G2 Cells</subject><subject>Hepatitis B</subject><subject>Hepatitis B virus - genetics</subject><subject>Hepatocytes - metabolism</subject><subject>Humans</subject><subject>Immune response</subject><subject>Immune system</subject><subject>Infections</subject><subject>Kinases</subject><subject>Liver cancer</subject><subject>Localization</subject><subject>MAP kinase</subject><subject>Organic Anion Transporters, Sodium-Dependent - metabolism</subject><subject>Phosphorylation</subject><subject>Protein kinase A</subject><subject>Protein-tyrosine kinase</subject><subject>Proteins</subject><subject>Public health</subject><subject>RNA processing</subject><subject>Symporters - metabolism</subject><subject>Tyrosine</subject><subject>Viral infections</subject><issn>1422-0067</issn><issn>1661-6596</issn><issn>1422-0067</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNpdkc9LwzAUx4Mobk5vnqXgxYPV_Gja5iLomE4QHLJ5DWmSdhltM5N24n9v5-aYnt6D93nf9-MLwDmCN4QweGsWlccEMopwcgD6KMI4hDBODvfyHjjxfgEhJpiyY9AjlMaEorQPJpO59cu5XTrbaFsZ6YNZ7cRKl8H44T2YOlMU2mkVvOlP40xdBDYPxtY3wbbRm6IW5bowWum68afgKBel12fbOACzx9F0OA5fXp-eh_cvoYwQbkJFE4lRmhKZkkgqkeY0FlSpHEuBEFE5wzBTMIFMZYTGTCkRpRlhCpFMrPsG4G6ju2yzSivZzXai5EtnKuG-uBWG_63UZs4Lu-IMwQhR3AlcbQWc_Wi1b3hlvNRlKWptW89xHEdJGifdpwbg8h-6sK3rzv6hCExjRFhHXW8o6az3Tue7ZRDka6v4vlUdfrF_wA7-9YZ8A1LakLo</recordid><startdate>20220504</startdate><enddate>20220504</enddate><creator>Lim, ZiJie</creator><creator>Mohd-Ismail, Nur Khairiah Binte</creator><creator>Png, Evelyn</creator><creator>Sze, Ching Wooen</creator><creator>Lin, Qifeng</creator><creator>Hong, Wanjin</creator><creator>Lim, Seng Gee</creator><creator>Tan, Yee-Joo</creator><creator>Gunaratne, Jayantha</creator><general>MDPI AG</general><general>MDPI</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>K9.</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>MBDVC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-2278-4497</orcidid><orcidid>https://orcid.org/0000-0002-3700-7586</orcidid><orcidid>https://orcid.org/0000-0002-1501-8700</orcidid><orcidid>https://orcid.org/0000-0003-0913-7567</orcidid></search><sort><creationdate>20220504</creationdate><title>Phosphoproteomics Unravel HBV Triggered Rewiring of Host Phosphosignaling Events</title><author>Lim, ZiJie ; 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However, vaccination rates remains low in some regions of the world, driving the need for novel strategies to minimise infections and prevent disease progression. Thus, understanding of perturbed molecular signaling events during early phases of HBV infection is required. Phosphosignaling is known to be involved in the HBV infection processes, yet systems-level changes in phosphosignaling pathways in the host during infection remain unclear. To this end, we performed phosphoproteome profiling on HBV-infected HepG2-NTCP cells. Our results showed that HBV infection drastically altered the host phosphoproteome and its associated proteins, including kinases. Computational analysis of this phosphoproteome revealed dysregulation of the pathways involved in immune responses, cell cycle processes, and RNA processing during HBV infection. Kinase Substrate Enrichment Analysis (KSEA) identified the dysregulated activities of important kinases, including those from CMGC (CDK, MAPK, GSK, and CLK), AGC (protein kinase A, G, and C), and TK (Tyrosine Kinase) families. Of note, the inhibition of CLKs significantly reduced HBV infection in HepG2-NTCP cells. In all, our study unravelled the aberrated phosphosignaling pathways and the associated kinases, presenting potential entry points for developing novel therapeutic strategies for HBV treatment.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>35563518</pmid><doi>10.3390/ijms23095127</doi><orcidid>https://orcid.org/0000-0002-2278-4497</orcidid><orcidid>https://orcid.org/0000-0002-3700-7586</orcidid><orcidid>https://orcid.org/0000-0002-1501-8700</orcidid><orcidid>https://orcid.org/0000-0003-0913-7567</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Antigens Cell cycle Computer applications Disease control Genomes Granulocytes Hep G2 Cells Hepatitis B Hepatitis B virus - genetics Hepatocytes - metabolism Humans Immune response Immune system Infections Kinases Liver cancer Localization MAP kinase Organic Anion Transporters, Sodium-Dependent - metabolism Phosphorylation Protein kinase A Protein-tyrosine kinase Proteins Public health RNA processing Symporters - metabolism Tyrosine Viral infections |
title | Phosphoproteomics Unravel HBV Triggered Rewiring of Host Phosphosignaling Events |
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