Comparing the Performances of Force Fields in Conformational Searching of Hydrogen-Bond-Donating Catalysts
Here, we compare the relative performances of different force fields for conformational searching of hydrogen-bond-donating catalyst-like molecules. We assess the force fields by their predictions of conformer energies, geometries, low-energy, nonredundant conformers, and the maximum numbers of poss...
Gespeichert in:
Veröffentlicht in: | Journal of organic chemistry 2022-05, Vol.87 (9), p.5703-5712 |
---|---|
Hauptverfasser: | , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 5712 |
---|---|
container_issue | 9 |
container_start_page | 5703 |
container_title | Journal of organic chemistry |
container_volume | 87 |
creator | Lewis-Atwell, Toby Townsend, Piers A Grayson, Matthew N |
description | Here, we compare the relative performances of different force fields for conformational searching of hydrogen-bond-donating catalyst-like molecules. We assess the force fields by their predictions of conformer energies, geometries, low-energy, nonredundant conformers, and the maximum numbers of possible conformers. Overall, MM3, MMFFs, and OPLS3e had consistently strong performances and are recommended for conformationally searching molecules structurally similar to those in this study. |
doi_str_mv | 10.1021/acs.joc.2c00066 |
format | Article |
fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_9087191</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2656743222</sourcerecordid><originalsourceid>FETCH-LOGICAL-a429t-76ff0ba47d65dc0123f49f16e37980e39a3756c0419c835f87964ba2a062b6343</originalsourceid><addsrcrecordid>eNp1kc-LEzEYhoMobl09e5M5CjLdLz-nuQjuaF1hYRfUc_iaSdopM0lNpkL_e1NbF_ewpxze530T8hDylsKcAqNXaPN8G-2cWQBQ6hmZUcmgVhrEczIDYKzmTPEL8irnbUFASvmSXHApGiUUnZFtG8cdpj6sq2njqnuXfEwjButyFX21jMm6atm7octVH6o2hr_51MeAQ_XdYbKbY7mwN4cuxbUL9XUMXf25ANMxaXHC4ZCn_Jq88Dhk9-Z8XpKfyy8_2pv69u7rt_bTbY2C6alulPewQtF0SnYWKONeaE-V441egOMaeSOVBUG1XXDpF41WYoUMQbGV4oJfko-n3d1-NbrOujAlHMwu9SOmg4nYm8dJ6DdmHX8bDYuGaloG3p8HUvy1d3kyY5-tGwYMLu6zYUqqRnDGWEGvTqhNMefk_MM1FMzRkCmGTDFkzoZK493_r3vg_ykpwIcTcGruU_no_OTcH1_pnVI</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2656743222</pqid></control><display><type>article</type><title>Comparing the Performances of Force Fields in Conformational Searching of Hydrogen-Bond-Donating Catalysts</title><source>ACS Publications</source><source>MEDLINE</source><creator>Lewis-Atwell, Toby ; Townsend, Piers A ; Grayson, Matthew N</creator><creatorcontrib>Lewis-Atwell, Toby ; Townsend, Piers A ; Grayson, Matthew N</creatorcontrib><description>Here, we compare the relative performances of different force fields for conformational searching of hydrogen-bond-donating catalyst-like molecules. We assess the force fields by their predictions of conformer energies, geometries, low-energy, nonredundant conformers, and the maximum numbers of possible conformers. Overall, MM3, MMFFs, and OPLS3e had consistently strong performances and are recommended for conformationally searching molecules structurally similar to those in this study.</description><identifier>ISSN: 0022-3263</identifier><identifier>EISSN: 1520-6904</identifier><identifier>DOI: 10.1021/acs.joc.2c00066</identifier><identifier>PMID: 35476461</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><subject>Hydrogen ; Hydrogen Bonding ; Molecular Conformation</subject><ispartof>Journal of organic chemistry, 2022-05, Vol.87 (9), p.5703-5712</ispartof><rights>2022 The Authors. Published by American Chemical Society</rights><rights>2022 The Authors. Published by American Chemical Society 2022 The Authors</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a429t-76ff0ba47d65dc0123f49f16e37980e39a3756c0419c835f87964ba2a062b6343</citedby><cites>FETCH-LOGICAL-a429t-76ff0ba47d65dc0123f49f16e37980e39a3756c0419c835f87964ba2a062b6343</cites><orcidid>0000-0002-7164-7958 ; 0000-0002-0918-8754 ; 0000-0003-2116-7929</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/acs.joc.2c00066$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/acs.joc.2c00066$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>230,314,776,780,881,2752,27053,27901,27902,56713,56763</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35476461$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lewis-Atwell, Toby</creatorcontrib><creatorcontrib>Townsend, Piers A</creatorcontrib><creatorcontrib>Grayson, Matthew N</creatorcontrib><title>Comparing the Performances of Force Fields in Conformational Searching of Hydrogen-Bond-Donating Catalysts</title><title>Journal of organic chemistry</title><addtitle>J. Org. Chem</addtitle><description>Here, we compare the relative performances of different force fields for conformational searching of hydrogen-bond-donating catalyst-like molecules. We assess the force fields by their predictions of conformer energies, geometries, low-energy, nonredundant conformers, and the maximum numbers of possible conformers. Overall, MM3, MMFFs, and OPLS3e had consistently strong performances and are recommended for conformationally searching molecules structurally similar to those in this study.</description><subject>Hydrogen</subject><subject>Hydrogen Bonding</subject><subject>Molecular Conformation</subject><issn>0022-3263</issn><issn>1520-6904</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp1kc-LEzEYhoMobl09e5M5CjLdLz-nuQjuaF1hYRfUc_iaSdopM0lNpkL_e1NbF_ewpxze530T8hDylsKcAqNXaPN8G-2cWQBQ6hmZUcmgVhrEczIDYKzmTPEL8irnbUFASvmSXHApGiUUnZFtG8cdpj6sq2njqnuXfEwjButyFX21jMm6atm7octVH6o2hr_51MeAQ_XdYbKbY7mwN4cuxbUL9XUMXf25ANMxaXHC4ZCn_Jq88Dhk9-Z8XpKfyy8_2pv69u7rt_bTbY2C6alulPewQtF0SnYWKONeaE-V441egOMaeSOVBUG1XXDpF41WYoUMQbGV4oJfko-n3d1-NbrOujAlHMwu9SOmg4nYm8dJ6DdmHX8bDYuGaloG3p8HUvy1d3kyY5-tGwYMLu6zYUqqRnDGWEGvTqhNMefk_MM1FMzRkCmGTDFkzoZK493_r3vg_ykpwIcTcGruU_no_OTcH1_pnVI</recordid><startdate>20220506</startdate><enddate>20220506</enddate><creator>Lewis-Atwell, Toby</creator><creator>Townsend, Piers A</creator><creator>Grayson, Matthew N</creator><general>American Chemical Society</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-7164-7958</orcidid><orcidid>https://orcid.org/0000-0002-0918-8754</orcidid><orcidid>https://orcid.org/0000-0003-2116-7929</orcidid></search><sort><creationdate>20220506</creationdate><title>Comparing the Performances of Force Fields in Conformational Searching of Hydrogen-Bond-Donating Catalysts</title><author>Lewis-Atwell, Toby ; Townsend, Piers A ; Grayson, Matthew N</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a429t-76ff0ba47d65dc0123f49f16e37980e39a3756c0419c835f87964ba2a062b6343</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Hydrogen</topic><topic>Hydrogen Bonding</topic><topic>Molecular Conformation</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lewis-Atwell, Toby</creatorcontrib><creatorcontrib>Townsend, Piers A</creatorcontrib><creatorcontrib>Grayson, Matthew N</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of organic chemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lewis-Atwell, Toby</au><au>Townsend, Piers A</au><au>Grayson, Matthew N</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Comparing the Performances of Force Fields in Conformational Searching of Hydrogen-Bond-Donating Catalysts</atitle><jtitle>Journal of organic chemistry</jtitle><addtitle>J. Org. Chem</addtitle><date>2022-05-06</date><risdate>2022</risdate><volume>87</volume><issue>9</issue><spage>5703</spage><epage>5712</epage><pages>5703-5712</pages><issn>0022-3263</issn><eissn>1520-6904</eissn><abstract>Here, we compare the relative performances of different force fields for conformational searching of hydrogen-bond-donating catalyst-like molecules. We assess the force fields by their predictions of conformer energies, geometries, low-energy, nonredundant conformers, and the maximum numbers of possible conformers. Overall, MM3, MMFFs, and OPLS3e had consistently strong performances and are recommended for conformationally searching molecules structurally similar to those in this study.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>35476461</pmid><doi>10.1021/acs.joc.2c00066</doi><tpages>10</tpages><orcidid>https://orcid.org/0000-0002-7164-7958</orcidid><orcidid>https://orcid.org/0000-0002-0918-8754</orcidid><orcidid>https://orcid.org/0000-0003-2116-7929</orcidid><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0022-3263 |
ispartof | Journal of organic chemistry, 2022-05, Vol.87 (9), p.5703-5712 |
issn | 0022-3263 1520-6904 |
language | eng |
recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_9087191 |
source | ACS Publications; MEDLINE |
subjects | Hydrogen Hydrogen Bonding Molecular Conformation |
title | Comparing the Performances of Force Fields in Conformational Searching of Hydrogen-Bond-Donating Catalysts |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-02T03%3A11%3A32IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Comparing%20the%20Performances%20of%20Force%20Fields%20in%20Conformational%20Searching%20of%20Hydrogen-Bond-Donating%20Catalysts&rft.jtitle=Journal%20of%20organic%20chemistry&rft.au=Lewis-Atwell,%20Toby&rft.date=2022-05-06&rft.volume=87&rft.issue=9&rft.spage=5703&rft.epage=5712&rft.pages=5703-5712&rft.issn=0022-3263&rft.eissn=1520-6904&rft_id=info:doi/10.1021/acs.joc.2c00066&rft_dat=%3Cproquest_pubme%3E2656743222%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2656743222&rft_id=info:pmid/35476461&rfr_iscdi=true |