Utilizing Network Pharmacology and Molecular Docking Integrated Surface Plasmon Resonance Technology to Investigate the Potential Targets and Mechanisms of Tripterygium wilfordii against Pulmonary Artery Hypertension

Background. Pulmonary artery hypertension (PAH) is a rare, life-limiting cardiopulmonary disorder characterized by the progressive and remodeling of pulmonary vasculature. Although the development of the technology brings us many approaches for the treatment of PAH, the effect of treatment is unsati...

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Veröffentlicht in:Evidence-based complementary and alternative medicine 2022, Vol.2022, p.9862733-13
Hauptverfasser: Wang, Shifa, Liu, Yunjing, Wang, Qingguo, Xu, Xiufeng, Huang, Tao, Dong, Peikang, Wang, Lide, Cao, Bufan, Jiao, Qiuhong, Sun, Xiaodong, Li, Jingtian, Wang, Tao
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container_start_page 9862733
container_title Evidence-based complementary and alternative medicine
container_volume 2022
creator Wang, Shifa
Liu, Yunjing
Wang, Qingguo
Xu, Xiufeng
Huang, Tao
Dong, Peikang
Wang, Lide
Cao, Bufan
Jiao, Qiuhong
Sun, Xiaodong
Li, Jingtian
Wang, Tao
description Background. Pulmonary artery hypertension (PAH) is a rare, life-limiting cardiopulmonary disorder characterized by the progressive and remodeling of pulmonary vasculature. Although the development of the technology brings us many approaches for the treatment of PAH, the effect of treatment is unsatisfactory. Tripterygium wilfordii (TW), as a traditional Chinese medicine (TCM), has been widely used in anti-inflammation, anticancer, and other fields. However, the potential of TW in treating PAH is currently unclear. Methods. Active ingredients and their corresponding genes were harvested from the Traditional Chinese Medicine Database and Analysis Platform (TCMSP), CTD, and STITCH. Meanwhile, genes associated with PAH were adopted from OMIM and GeneCards databases. Through Gene Ontology (GO) and Kyoto Encyclopaedia of Genes and Genomes (KEGG) pathway enrichment analyses, potential targeting KEGG pathways and functions were further collected. Then, STRING was used to generate the protein-protein interaction (PPI) network. The “ingredients-targets-pathway” network was built by Cystoscope. Finally, the binding between active ingredients of TW and corresponding targets of PAH was identified via molecular docking technology and surface plasmon resonance (SPR) experiments. Results. The network pharmacology analysis revealed 36 active ingredients in TW and 150 potential targets related to the treatment of PAH with TW. Moreover, GO enrichment analysis showed that the key function in molecular function (MF) was related to enzyme binding, the key function in biological process (BP) was related to cellular response to organic substance, and the key function in cellular component (CC) was related to KEGG enrichment analysis and found that it was closely related to the IL-17 signaling pathway, TNF signaling pathway, Toll-like receptor signaling pathway, and apoptosis. At last, molecular docking results revealed that the main active ingredients of TW had a strong binding ability with the PAH target protein. In addition, the SPR experiment revealed that kaempferol was combined with the CASP3 protein rather than PARP1, while triptolide was combined with PARP1 rather than the CASP3 protein. Conclusion. TW may have therapeutic effects on PAH through multitargets and multimethods, which provide a scientific basis for further elaborating the mechanism of Tripterygium wilfordii in the treatment of PAH.
doi_str_mv 10.1155/2022/9862733
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Pulmonary artery hypertension (PAH) is a rare, life-limiting cardiopulmonary disorder characterized by the progressive and remodeling of pulmonary vasculature. Although the development of the technology brings us many approaches for the treatment of PAH, the effect of treatment is unsatisfactory. Tripterygium wilfordii (TW), as a traditional Chinese medicine (TCM), has been widely used in anti-inflammation, anticancer, and other fields. However, the potential of TW in treating PAH is currently unclear. Methods. Active ingredients and their corresponding genes were harvested from the Traditional Chinese Medicine Database and Analysis Platform (TCMSP), CTD, and STITCH. Meanwhile, genes associated with PAH were adopted from OMIM and GeneCards databases. Through Gene Ontology (GO) and Kyoto Encyclopaedia of Genes and Genomes (KEGG) pathway enrichment analyses, potential targeting KEGG pathways and functions were further collected. Then, STRING was used to generate the protein-protein interaction (PPI) network. The “ingredients-targets-pathway” network was built by Cystoscope. Finally, the binding between active ingredients of TW and corresponding targets of PAH was identified via molecular docking technology and surface plasmon resonance (SPR) experiments. Results. The network pharmacology analysis revealed 36 active ingredients in TW and 150 potential targets related to the treatment of PAH with TW. Moreover, GO enrichment analysis showed that the key function in molecular function (MF) was related to enzyme binding, the key function in biological process (BP) was related to cellular response to organic substance, and the key function in cellular component (CC) was related to KEGG enrichment analysis and found that it was closely related to the IL-17 signaling pathway, TNF signaling pathway, Toll-like receptor signaling pathway, and apoptosis. At last, molecular docking results revealed that the main active ingredients of TW had a strong binding ability with the PAH target protein. In addition, the SPR experiment revealed that kaempferol was combined with the CASP3 protein rather than PARP1, while triptolide was combined with PARP1 rather than the CASP3 protein. Conclusion. TW may have therapeutic effects on PAH through multitargets and multimethods, which provide a scientific basis for further elaborating the mechanism of Tripterygium wilfordii in the treatment of PAH.</description><identifier>ISSN: 1741-427X</identifier><identifier>EISSN: 1741-4288</identifier><identifier>DOI: 10.1155/2022/9862733</identifier><identifier>PMID: 35535154</identifier><language>eng</language><publisher>United States: Hindawi</publisher><subject>Apoptosis ; Binding sites ; Chinese medicine ; Clinical medicine ; Disease ; Drugs ; Experiments ; Genes ; Genomes ; Herbal medicine ; Hypertension ; Interleukin 17 ; Kaempferol ; Ligands ; Ontology ; Pharmacology ; Poly(ADP-ribose) polymerase ; Protein interaction ; Proteins ; Pulmonary arteries ; Pulmonary artery ; Signal transduction ; Surface plasmon resonance ; Toll-like receptors ; Traditional Chinese medicine ; Tripterygium wilfordii ; Triptolide ; Tumor necrosis factor</subject><ispartof>Evidence-based complementary and alternative medicine, 2022, Vol.2022, p.9862733-13</ispartof><rights>Copyright © 2022 Shifa Wang et al.</rights><rights>Copyright © 2022 Shifa Wang et al. This is an open access article distributed under the Creative Commons Attribution License (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. https://creativecommons.org/licenses/by/4.0</rights><rights>Copyright © 2022 Shifa Wang et al. 2022</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c448t-b3146a6e21f23189ba6b3dff2ebdf15127f4342fab2f3dddb297e9eeed4aff453</citedby><cites>FETCH-LOGICAL-c448t-b3146a6e21f23189ba6b3dff2ebdf15127f4342fab2f3dddb297e9eeed4aff453</cites><orcidid>0000-0001-7775-2823 ; 0000-0003-1159-1742 ; 0000-0002-5836-761X ; 0000-0002-3821-9302 ; 0000-0002-5524-7532 ; 0000-0002-4879-5733 ; 0000-0002-5603-9698 ; 0000-0002-8666-606X ; 0000-0001-6772-807X ; 0000-0002-4430-0406 ; 0000-0003-3885-3271 ; 0000-0002-4398-9619</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9078765/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9078765/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,4010,27900,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35535154$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Gu, Jiangyong</contributor><contributor>Jiangyong Gu</contributor><creatorcontrib>Wang, Shifa</creatorcontrib><creatorcontrib>Liu, Yunjing</creatorcontrib><creatorcontrib>Wang, Qingguo</creatorcontrib><creatorcontrib>Xu, Xiufeng</creatorcontrib><creatorcontrib>Huang, Tao</creatorcontrib><creatorcontrib>Dong, Peikang</creatorcontrib><creatorcontrib>Wang, Lide</creatorcontrib><creatorcontrib>Cao, Bufan</creatorcontrib><creatorcontrib>Jiao, Qiuhong</creatorcontrib><creatorcontrib>Sun, Xiaodong</creatorcontrib><creatorcontrib>Li, Jingtian</creatorcontrib><creatorcontrib>Wang, Tao</creatorcontrib><title>Utilizing Network Pharmacology and Molecular Docking Integrated Surface Plasmon Resonance Technology to Investigate the Potential Targets and Mechanisms of Tripterygium wilfordii against Pulmonary Artery Hypertension</title><title>Evidence-based complementary and alternative medicine</title><addtitle>Evid Based Complement Alternat Med</addtitle><description>Background. Pulmonary artery hypertension (PAH) is a rare, life-limiting cardiopulmonary disorder characterized by the progressive and remodeling of pulmonary vasculature. Although the development of the technology brings us many approaches for the treatment of PAH, the effect of treatment is unsatisfactory. Tripterygium wilfordii (TW), as a traditional Chinese medicine (TCM), has been widely used in anti-inflammation, anticancer, and other fields. However, the potential of TW in treating PAH is currently unclear. Methods. Active ingredients and their corresponding genes were harvested from the Traditional Chinese Medicine Database and Analysis Platform (TCMSP), CTD, and STITCH. Meanwhile, genes associated with PAH were adopted from OMIM and GeneCards databases. Through Gene Ontology (GO) and Kyoto Encyclopaedia of Genes and Genomes (KEGG) pathway enrichment analyses, potential targeting KEGG pathways and functions were further collected. Then, STRING was used to generate the protein-protein interaction (PPI) network. The “ingredients-targets-pathway” network was built by Cystoscope. Finally, the binding between active ingredients of TW and corresponding targets of PAH was identified via molecular docking technology and surface plasmon resonance (SPR) experiments. Results. The network pharmacology analysis revealed 36 active ingredients in TW and 150 potential targets related to the treatment of PAH with TW. Moreover, GO enrichment analysis showed that the key function in molecular function (MF) was related to enzyme binding, the key function in biological process (BP) was related to cellular response to organic substance, and the key function in cellular component (CC) was related to KEGG enrichment analysis and found that it was closely related to the IL-17 signaling pathway, TNF signaling pathway, Toll-like receptor signaling pathway, and apoptosis. At last, molecular docking results revealed that the main active ingredients of TW had a strong binding ability with the PAH target protein. In addition, the SPR experiment revealed that kaempferol was combined with the CASP3 protein rather than PARP1, while triptolide was combined with PARP1 rather than the CASP3 protein. Conclusion. TW may have therapeutic effects on PAH through multitargets and multimethods, which provide a scientific basis for further elaborating the mechanism of Tripterygium wilfordii in the treatment of PAH.</description><subject>Apoptosis</subject><subject>Binding sites</subject><subject>Chinese medicine</subject><subject>Clinical medicine</subject><subject>Disease</subject><subject>Drugs</subject><subject>Experiments</subject><subject>Genes</subject><subject>Genomes</subject><subject>Herbal medicine</subject><subject>Hypertension</subject><subject>Interleukin 17</subject><subject>Kaempferol</subject><subject>Ligands</subject><subject>Ontology</subject><subject>Pharmacology</subject><subject>Poly(ADP-ribose) polymerase</subject><subject>Protein interaction</subject><subject>Proteins</subject><subject>Pulmonary arteries</subject><subject>Pulmonary artery</subject><subject>Signal transduction</subject><subject>Surface plasmon resonance</subject><subject>Toll-like receptors</subject><subject>Traditional Chinese medicine</subject><subject>Tripterygium wilfordii</subject><subject>Triptolide</subject><subject>Tumor necrosis factor</subject><issn>1741-427X</issn><issn>1741-4288</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>RHX</sourceid><sourceid>8G5</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNp9kk1v1DAQhiMEoqVw44wscUGCpbHz4eSCVJWPViqwgq3ELZrE46xbx15sp6vll_JzcJRlBRw4eeR55p0PvUnylKavKS2KU5YydlpXJeNZdi85pjyni5xV1f1DzL8dJY-8v0lTVnPOHyZHWVFkBS3y4-TndVBa_VCmJ58wbK27Jcs1uAE6q22_I2AE-Wg1dqMGR97a7nZCL03A3kFAQb6OTkKHZKnBD9aQL-itARN_VtitzawSbCy5Qx9UH4tIWEfeBjRBgSYrcD0GP7eKNWCUHzyxkqyc2gR0u16NA9kqLa0TShHoQRkfyHLUsSO4HTlzE0YudhuMkfHKmsfJAwna45P9e5Jcv3-3Or9YXH3-cHl-drXo8rwKizajeQklMipZRqu6hbLNhJQMWyFpQRmXeZYzCS2TmRCijSfEGhFFDlLmRXaSvJl1N2M7oOjiUg50s3FqiJM1FlTzd8aoddPbu6ZOecXLSeDFXsDZ72O8UTMo36HWYNCOvmFlSeuCVZRH9Pk_6I0dnYnrTVTKi5ymVaRezVTnrPcO5WEYmjaTZZrJMs3eMhF_9ucCB_i3RyLwcgbWygjYqv_L_QJqZdGM</recordid><startdate>2022</startdate><enddate>2022</enddate><creator>Wang, Shifa</creator><creator>Liu, Yunjing</creator><creator>Wang, Qingguo</creator><creator>Xu, Xiufeng</creator><creator>Huang, Tao</creator><creator>Dong, Peikang</creator><creator>Wang, Lide</creator><creator>Cao, Bufan</creator><creator>Jiao, Qiuhong</creator><creator>Sun, Xiaodong</creator><creator>Li, Jingtian</creator><creator>Wang, Tao</creator><general>Hindawi</general><general>Hindawi Limited</general><scope>RHU</scope><scope>RHW</scope><scope>RHX</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7RV</scope><scope>7T5</scope><scope>7TO</scope><scope>7X7</scope><scope>7XB</scope><scope>88G</scope><scope>8AO</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>H94</scope><scope>K9.</scope><scope>KB0</scope><scope>M0S</scope><scope>M2M</scope><scope>M2O</scope><scope>MBDVC</scope><scope>NAPCQ</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PSYQQ</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0001-7775-2823</orcidid><orcidid>https://orcid.org/0000-0003-1159-1742</orcidid><orcidid>https://orcid.org/0000-0002-5836-761X</orcidid><orcidid>https://orcid.org/0000-0002-3821-9302</orcidid><orcidid>https://orcid.org/0000-0002-5524-7532</orcidid><orcidid>https://orcid.org/0000-0002-4879-5733</orcidid><orcidid>https://orcid.org/0000-0002-5603-9698</orcidid><orcidid>https://orcid.org/0000-0002-8666-606X</orcidid><orcidid>https://orcid.org/0000-0001-6772-807X</orcidid><orcidid>https://orcid.org/0000-0002-4430-0406</orcidid><orcidid>https://orcid.org/0000-0003-3885-3271</orcidid><orcidid>https://orcid.org/0000-0002-4398-9619</orcidid></search><sort><creationdate>2022</creationdate><title>Utilizing Network Pharmacology and Molecular Docking Integrated Surface Plasmon Resonance Technology to Investigate the Potential Targets and Mechanisms of Tripterygium wilfordii against Pulmonary Artery Hypertension</title><author>Wang, Shifa ; Liu, Yunjing ; Wang, Qingguo ; Xu, Xiufeng ; Huang, Tao ; Dong, Peikang ; Wang, Lide ; Cao, Bufan ; Jiao, Qiuhong ; Sun, Xiaodong ; Li, Jingtian ; Wang, Tao</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c448t-b3146a6e21f23189ba6b3dff2ebdf15127f4342fab2f3dddb297e9eeed4aff453</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Apoptosis</topic><topic>Binding sites</topic><topic>Chinese medicine</topic><topic>Clinical medicine</topic><topic>Disease</topic><topic>Drugs</topic><topic>Experiments</topic><topic>Genes</topic><topic>Genomes</topic><topic>Herbal medicine</topic><topic>Hypertension</topic><topic>Interleukin 17</topic><topic>Kaempferol</topic><topic>Ligands</topic><topic>Ontology</topic><topic>Pharmacology</topic><topic>Poly(ADP-ribose) polymerase</topic><topic>Protein interaction</topic><topic>Proteins</topic><topic>Pulmonary arteries</topic><topic>Pulmonary artery</topic><topic>Signal transduction</topic><topic>Surface plasmon resonance</topic><topic>Toll-like receptors</topic><topic>Traditional Chinese medicine</topic><topic>Tripterygium wilfordii</topic><topic>Triptolide</topic><topic>Tumor necrosis factor</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wang, Shifa</creatorcontrib><creatorcontrib>Liu, Yunjing</creatorcontrib><creatorcontrib>Wang, Qingguo</creatorcontrib><creatorcontrib>Xu, Xiufeng</creatorcontrib><creatorcontrib>Huang, Tao</creatorcontrib><creatorcontrib>Dong, Peikang</creatorcontrib><creatorcontrib>Wang, Lide</creatorcontrib><creatorcontrib>Cao, Bufan</creatorcontrib><creatorcontrib>Jiao, Qiuhong</creatorcontrib><creatorcontrib>Sun, Xiaodong</creatorcontrib><creatorcontrib>Li, Jingtian</creatorcontrib><creatorcontrib>Wang, Tao</creatorcontrib><collection>Hindawi Publishing Complete</collection><collection>Hindawi Publishing Subscription Journals</collection><collection>Hindawi Publishing Open Access</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Nursing &amp; 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Pulmonary artery hypertension (PAH) is a rare, life-limiting cardiopulmonary disorder characterized by the progressive and remodeling of pulmonary vasculature. Although the development of the technology brings us many approaches for the treatment of PAH, the effect of treatment is unsatisfactory. Tripterygium wilfordii (TW), as a traditional Chinese medicine (TCM), has been widely used in anti-inflammation, anticancer, and other fields. However, the potential of TW in treating PAH is currently unclear. Methods. Active ingredients and their corresponding genes were harvested from the Traditional Chinese Medicine Database and Analysis Platform (TCMSP), CTD, and STITCH. Meanwhile, genes associated with PAH were adopted from OMIM and GeneCards databases. Through Gene Ontology (GO) and Kyoto Encyclopaedia of Genes and Genomes (KEGG) pathway enrichment analyses, potential targeting KEGG pathways and functions were further collected. Then, STRING was used to generate the protein-protein interaction (PPI) network. The “ingredients-targets-pathway” network was built by Cystoscope. Finally, the binding between active ingredients of TW and corresponding targets of PAH was identified via molecular docking technology and surface plasmon resonance (SPR) experiments. Results. The network pharmacology analysis revealed 36 active ingredients in TW and 150 potential targets related to the treatment of PAH with TW. Moreover, GO enrichment analysis showed that the key function in molecular function (MF) was related to enzyme binding, the key function in biological process (BP) was related to cellular response to organic substance, and the key function in cellular component (CC) was related to KEGG enrichment analysis and found that it was closely related to the IL-17 signaling pathway, TNF signaling pathway, Toll-like receptor signaling pathway, and apoptosis. At last, molecular docking results revealed that the main active ingredients of TW had a strong binding ability with the PAH target protein. In addition, the SPR experiment revealed that kaempferol was combined with the CASP3 protein rather than PARP1, while triptolide was combined with PARP1 rather than the CASP3 protein. Conclusion. TW may have therapeutic effects on PAH through multitargets and multimethods, which provide a scientific basis for further elaborating the mechanism of Tripterygium wilfordii in the treatment of PAH.</abstract><cop>United States</cop><pub>Hindawi</pub><pmid>35535154</pmid><doi>10.1155/2022/9862733</doi><tpages>13</tpages><orcidid>https://orcid.org/0000-0001-7775-2823</orcidid><orcidid>https://orcid.org/0000-0003-1159-1742</orcidid><orcidid>https://orcid.org/0000-0002-5836-761X</orcidid><orcidid>https://orcid.org/0000-0002-3821-9302</orcidid><orcidid>https://orcid.org/0000-0002-5524-7532</orcidid><orcidid>https://orcid.org/0000-0002-4879-5733</orcidid><orcidid>https://orcid.org/0000-0002-5603-9698</orcidid><orcidid>https://orcid.org/0000-0002-8666-606X</orcidid><orcidid>https://orcid.org/0000-0001-6772-807X</orcidid><orcidid>https://orcid.org/0000-0002-4430-0406</orcidid><orcidid>https://orcid.org/0000-0003-3885-3271</orcidid><orcidid>https://orcid.org/0000-0002-4398-9619</orcidid><oa>free_for_read</oa></addata></record>
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source Wiley Online Library Open Access; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central; Alma/SFX Local Collection; PubMed Central Open Access
subjects Apoptosis
Binding sites
Chinese medicine
Clinical medicine
Disease
Drugs
Experiments
Genes
Genomes
Herbal medicine
Hypertension
Interleukin 17
Kaempferol
Ligands
Ontology
Pharmacology
Poly(ADP-ribose) polymerase
Protein interaction
Proteins
Pulmonary arteries
Pulmonary artery
Signal transduction
Surface plasmon resonance
Toll-like receptors
Traditional Chinese medicine
Tripterygium wilfordii
Triptolide
Tumor necrosis factor
title Utilizing Network Pharmacology and Molecular Docking Integrated Surface Plasmon Resonance Technology to Investigate the Potential Targets and Mechanisms of Tripterygium wilfordii against Pulmonary Artery Hypertension
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