Integrated Genome Browser App Store
Abstract Summary Rapid progress in genome science requires equally rapid visualization software development so that researchers can better explore and understand novel datasets. To make developing new visualizations faster and easier, we previously re-factored the Integrated Genome Browser (IGB), a...
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| Veröffentlicht in: | Bioinformatics 2022-04, Vol.38 (8), p.2348-2349 |
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| container_title | Bioinformatics |
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| creator | Shanbhag, Sameer Patil, Riddhi Zahara, Noor Shetty, Chirag Weidenhammer, Rachel Watharkar, Sneha Tambvekar, Pranav Badzuh, Philip P Dias, Chester Vankayala, Narendra Kulkarni, Prutha Vallapureddy, Charan Kulkarni, Shamika Nikhare, Pooja Freese, Nowlan H Loraine, Ann E |
| description | Abstract
Summary
Rapid progress in genome science requires equally rapid visualization software development so that researchers can better explore and understand novel datasets. To make developing new visualizations faster and easier, we previously re-factored the Integrated Genome Browser (IGB), a desktop Java application with dozens of features, into a pluggable application framework that can accept new functionality as plug-ins, called IGB Apps. However, developers lacked a centralized location for sharing Apps, making it hard to connect with potential users. To fill this gap, we created an App Store for IGB, a user-friendly Web site for developers to release and document Apps, and for users to find them.
Availability and implementation
The IGB App Store is available from https://bioviz.org. |
| doi_str_mv | 10.1093/bioinformatics/btac109 |
| format | Article |
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Summary
Rapid progress in genome science requires equally rapid visualization software development so that researchers can better explore and understand novel datasets. To make developing new visualizations faster and easier, we previously re-factored the Integrated Genome Browser (IGB), a desktop Java application with dozens of features, into a pluggable application framework that can accept new functionality as plug-ins, called IGB Apps. However, developers lacked a centralized location for sharing Apps, making it hard to connect with potential users. To fill this gap, we created an App Store for IGB, a user-friendly Web site for developers to release and document Apps, and for users to find them.
Availability and implementation
The IGB App Store is available from https://bioviz.org.</description><identifier>ISSN: 1367-4803</identifier><identifier>EISSN: 1460-2059</identifier><identifier>EISSN: 1367-4811</identifier><identifier>DOI: 10.1093/bioinformatics/btac109</identifier><identifier>PMID: 35179566</identifier><language>eng</language><publisher>England: Oxford University Press</publisher><subject>Applications Note ; Genome ; Mobile Applications</subject><ispartof>Bioinformatics, 2022-04, Vol.38 (8), p.2348-2349</ispartof><rights>The Author(s) 2022. Published by Oxford University Press. 2022</rights><rights>The Author(s) 2022. Published by Oxford University Press.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c355t-9e5038c59d61d16e6495f9f33f8d9fb75168316a30f9310708e654b50d7f96d83</cites><orcidid>0000-0002-8365-0177 ; 0000-0002-5616-9230</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9004644/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9004644/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,1604,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35179566$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Marschall, Tobias</contributor><creatorcontrib>Shanbhag, Sameer</creatorcontrib><creatorcontrib>Patil, Riddhi</creatorcontrib><creatorcontrib>Zahara, Noor</creatorcontrib><creatorcontrib>Shetty, Chirag</creatorcontrib><creatorcontrib>Weidenhammer, Rachel</creatorcontrib><creatorcontrib>Watharkar, Sneha</creatorcontrib><creatorcontrib>Tambvekar, Pranav</creatorcontrib><creatorcontrib>Badzuh, Philip P</creatorcontrib><creatorcontrib>Dias, Chester</creatorcontrib><creatorcontrib>Vankayala, Narendra</creatorcontrib><creatorcontrib>Kulkarni, Prutha</creatorcontrib><creatorcontrib>Vallapureddy, Charan</creatorcontrib><creatorcontrib>Kulkarni, Shamika</creatorcontrib><creatorcontrib>Nikhare, Pooja</creatorcontrib><creatorcontrib>Freese, Nowlan H</creatorcontrib><creatorcontrib>Loraine, Ann E</creatorcontrib><title>Integrated Genome Browser App Store</title><title>Bioinformatics</title><addtitle>Bioinformatics</addtitle><description>Abstract
Summary
Rapid progress in genome science requires equally rapid visualization software development so that researchers can better explore and understand novel datasets. To make developing new visualizations faster and easier, we previously re-factored the Integrated Genome Browser (IGB), a desktop Java application with dozens of features, into a pluggable application framework that can accept new functionality as plug-ins, called IGB Apps. However, developers lacked a centralized location for sharing Apps, making it hard to connect with potential users. To fill this gap, we created an App Store for IGB, a user-friendly Web site for developers to release and document Apps, and for users to find them.
Availability and implementation
The IGB App Store is available from https://bioviz.org.</description><subject>Applications Note</subject><subject>Genome</subject><subject>Mobile Applications</subject><issn>1367-4803</issn><issn>1460-2059</issn><issn>1367-4811</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>TOX</sourceid><sourceid>EIF</sourceid><recordid>eNqNkE9Lw0AQxRdRbK1-hRLw4iV2tvsn2YtQi9ZCwYN6XjbJbI0k2bibKn57I63F3jzNMPPem-FHyJjCNQXFJlnpysY6X5uuzMMk60zez4_IkHIJ8RSEOu57JpOYp8AG5CyENwBBOeenZMAETZSQckgul02Ha286LKIFNq7G6Na7z4A-mrVt9NQ5j-fkxJoq4MWujsjL_d3z_CFePS6W89kqzpkQXaxQAEtzoQpJCypRciWssozZtFA2SwSVKaPSMLCKUUggRSl4JqBIrJJFykbkZpvbbrIaixybzptKt76sjf_SzpT6cNOUr3rtPrQC4JLzPuBqF-Dd-wZDp-sy5FhVpkG3CXoqWc8OplL0UrmV5t6F4NHuz1DQP4T1IWG9I9wbx3-f3Nt-kfYCuhW4Tfvf0G8hNY3M</recordid><startdate>20220412</startdate><enddate>20220412</enddate><creator>Shanbhag, Sameer</creator><creator>Patil, Riddhi</creator><creator>Zahara, Noor</creator><creator>Shetty, Chirag</creator><creator>Weidenhammer, Rachel</creator><creator>Watharkar, Sneha</creator><creator>Tambvekar, Pranav</creator><creator>Badzuh, Philip P</creator><creator>Dias, Chester</creator><creator>Vankayala, Narendra</creator><creator>Kulkarni, Prutha</creator><creator>Vallapureddy, Charan</creator><creator>Kulkarni, Shamika</creator><creator>Nikhare, Pooja</creator><creator>Freese, Nowlan H</creator><creator>Loraine, Ann E</creator><general>Oxford University Press</general><scope>TOX</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-8365-0177</orcidid><orcidid>https://orcid.org/0000-0002-5616-9230</orcidid></search><sort><creationdate>20220412</creationdate><title>Integrated Genome Browser App Store</title><author>Shanbhag, Sameer ; Patil, Riddhi ; Zahara, Noor ; Shetty, Chirag ; Weidenhammer, Rachel ; Watharkar, Sneha ; Tambvekar, Pranav ; Badzuh, Philip P ; Dias, Chester ; Vankayala, Narendra ; Kulkarni, Prutha ; Vallapureddy, Charan ; Kulkarni, Shamika ; Nikhare, Pooja ; Freese, Nowlan H ; Loraine, Ann E</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c355t-9e5038c59d61d16e6495f9f33f8d9fb75168316a30f9310708e654b50d7f96d83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Applications Note</topic><topic>Genome</topic><topic>Mobile Applications</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Shanbhag, Sameer</creatorcontrib><creatorcontrib>Patil, Riddhi</creatorcontrib><creatorcontrib>Zahara, Noor</creatorcontrib><creatorcontrib>Shetty, Chirag</creatorcontrib><creatorcontrib>Weidenhammer, Rachel</creatorcontrib><creatorcontrib>Watharkar, Sneha</creatorcontrib><creatorcontrib>Tambvekar, Pranav</creatorcontrib><creatorcontrib>Badzuh, Philip P</creatorcontrib><creatorcontrib>Dias, Chester</creatorcontrib><creatorcontrib>Vankayala, Narendra</creatorcontrib><creatorcontrib>Kulkarni, Prutha</creatorcontrib><creatorcontrib>Vallapureddy, Charan</creatorcontrib><creatorcontrib>Kulkarni, Shamika</creatorcontrib><creatorcontrib>Nikhare, Pooja</creatorcontrib><creatorcontrib>Freese, Nowlan H</creatorcontrib><creatorcontrib>Loraine, Ann E</creatorcontrib><collection>Access via Oxford University Press (Open Access Collection)</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Bioinformatics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Shanbhag, Sameer</au><au>Patil, Riddhi</au><au>Zahara, Noor</au><au>Shetty, Chirag</au><au>Weidenhammer, Rachel</au><au>Watharkar, Sneha</au><au>Tambvekar, Pranav</au><au>Badzuh, Philip P</au><au>Dias, Chester</au><au>Vankayala, Narendra</au><au>Kulkarni, Prutha</au><au>Vallapureddy, Charan</au><au>Kulkarni, Shamika</au><au>Nikhare, Pooja</au><au>Freese, Nowlan H</au><au>Loraine, Ann E</au><au>Marschall, Tobias</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Integrated Genome Browser App Store</atitle><jtitle>Bioinformatics</jtitle><addtitle>Bioinformatics</addtitle><date>2022-04-12</date><risdate>2022</risdate><volume>38</volume><issue>8</issue><spage>2348</spage><epage>2349</epage><pages>2348-2349</pages><issn>1367-4803</issn><eissn>1460-2059</eissn><eissn>1367-4811</eissn><abstract>Abstract
Summary
Rapid progress in genome science requires equally rapid visualization software development so that researchers can better explore and understand novel datasets. To make developing new visualizations faster and easier, we previously re-factored the Integrated Genome Browser (IGB), a desktop Java application with dozens of features, into a pluggable application framework that can accept new functionality as plug-ins, called IGB Apps. However, developers lacked a centralized location for sharing Apps, making it hard to connect with potential users. To fill this gap, we created an App Store for IGB, a user-friendly Web site for developers to release and document Apps, and for users to find them.
Availability and implementation
The IGB App Store is available from https://bioviz.org.</abstract><cop>England</cop><pub>Oxford University Press</pub><pmid>35179566</pmid><doi>10.1093/bioinformatics/btac109</doi><tpages>2</tpages><orcidid>https://orcid.org/0000-0002-8365-0177</orcidid><orcidid>https://orcid.org/0000-0002-5616-9230</orcidid><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1367-4803 |
| ispartof | Bioinformatics, 2022-04, Vol.38 (8), p.2348-2349 |
| issn | 1367-4803 1460-2059 1367-4811 |
| language | eng |
| recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_9004644 |
| source | MEDLINE; Access via Oxford University Press (Open Access Collection); EZB-FREE-00999 freely available EZB journals; PubMed Central; Alma/SFX Local Collection |
| subjects | Applications Note Genome Mobile Applications |
| title | Integrated Genome Browser App Store |
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