Automatic COVID-19 Lung Infection Segmentation through Modified Unet Model
The coronavirus (COVID-19) pandemic has had a terrible impact on human lives globally, with far-reaching consequences for the health and well-being of many people around the world. Statistically, 305.9 million people worldwide tested positive for COVID-19, and 5.48 million people died due to COVID-1...
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description | The coronavirus (COVID-19) pandemic has had a terrible impact on human lives globally, with far-reaching consequences for the health and well-being of many people around the world. Statistically, 305.9 million people worldwide tested positive for COVID-19, and 5.48 million people died due to COVID-19 up to 10 January 2022. CT scans can be used as an alternative to time-consuming RT-PCR testing for COVID-19. This research work proposes a segmentation approach to identifying ground glass opacity or ROI in CT images developed by coronavirus, with a modified structure of the Unet model having been used to classify the region of interest at the pixel level. The problem with segmentation is that the GGO often appears indistinguishable from a healthy lung in the initial stages of COVID-19, and so, to cope with this, the increased set of weights in contracting and expanding the Unet path and an improved convolutional module is added in order to establish the connection between the encoder and decoder pipeline. This has a major capacity to segment the GGO in the case of COVID-19, with the proposed model being referred to as “convUnet.” The experiment was performed on the Medseg1 dataset, and the addition of a set of weights at each layer of the model and modification in the connected module in Unet led to an improvement in overall segmentation results. The quantitative results obtained using accuracy, recall, precision, dice-coefficient, F1score, and IOU were 93.29%, 93.01%, 93.67%, 92.46%, 93.34%, 86.96%, respectively, which is better than that obtained using Unet and other state-of-the-art models. Therefore, this segmentation approach proved to be more accurate, fast, and reliable in helping doctors to diagnose COVID-19 quickly and efficiently. |
doi_str_mv | 10.1155/2022/6566982 |
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Statistically, 305.9 million people worldwide tested positive for COVID-19, and 5.48 million people died due to COVID-19 up to 10 January 2022. CT scans can be used as an alternative to time-consuming RT-PCR testing for COVID-19. This research work proposes a segmentation approach to identifying ground glass opacity or ROI in CT images developed by coronavirus, with a modified structure of the Unet model having been used to classify the region of interest at the pixel level. The problem with segmentation is that the GGO often appears indistinguishable from a healthy lung in the initial stages of COVID-19, and so, to cope with this, the increased set of weights in contracting and expanding the Unet path and an improved convolutional module is added in order to establish the connection between the encoder and decoder pipeline. This has a major capacity to segment the GGO in the case of COVID-19, with the proposed model being referred to as “convUnet.” The experiment was performed on the Medseg1 dataset, and the addition of a set of weights at each layer of the model and modification in the connected module in Unet led to an improvement in overall segmentation results. The quantitative results obtained using accuracy, recall, precision, dice-coefficient, F1score, and IOU were 93.29%, 93.01%, 93.67%, 92.46%, 93.34%, 86.96%, respectively, which is better than that obtained using Unet and other state-of-the-art models. Therefore, this segmentation approach proved to be more accurate, fast, and reliable in helping doctors to diagnose COVID-19 quickly and efficiently.</description><identifier>ISSN: 2040-2295</identifier><identifier>EISSN: 2040-2309</identifier><identifier>DOI: 10.1155/2022/6566982</identifier><identifier>PMID: 35422980</identifier><language>eng</language><publisher>England: Hindawi</publisher><subject>COVID-19 - diagnostic imaging ; COVID-19 Testing ; Humans ; Image Processing, Computer-Assisted - methods ; Lung - diagnostic imaging ; Tomography, X-Ray Computed - methods</subject><ispartof>Journal of healthcare engineering, 2022-04, Vol.2022, p.6566982-13</ispartof><rights>Copyright © 2022 Sania Shamim et al.</rights><rights>Copyright © 2022 Sania Shamim et al. 2022</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c420t-6971e971c1262667308cae3e7eb9be4825da952f48f06af292aa66d1adf9d9273</citedby><cites>FETCH-LOGICAL-c420t-6971e971c1262667308cae3e7eb9be4825da952f48f06af292aa66d1adf9d9273</cites><orcidid>0000-0003-2004-3289 ; 0000-0002-1931-9607 ; 0000-0003-0191-7171 ; 0000-0001-9030-8102 ; 0000-0003-3535-8005 ; 0000-0002-9356-1186</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9002904/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9002904/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35422980$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Khan, Sahfqat Ullah</contributor><creatorcontrib>Shamim, Sania</creatorcontrib><creatorcontrib>Awan, Mazhar Javed</creatorcontrib><creatorcontrib>Mohd Zain, Azlan</creatorcontrib><creatorcontrib>Naseem, Usman</creatorcontrib><creatorcontrib>Mohammed, Mazin Abed</creatorcontrib><creatorcontrib>Garcia-Zapirain, Begonya</creatorcontrib><title>Automatic COVID-19 Lung Infection Segmentation through Modified Unet Model</title><title>Journal of healthcare engineering</title><addtitle>J Healthc Eng</addtitle><description>The coronavirus (COVID-19) pandemic has had a terrible impact on human lives globally, with far-reaching consequences for the health and well-being of many people around the world. Statistically, 305.9 million people worldwide tested positive for COVID-19, and 5.48 million people died due to COVID-19 up to 10 January 2022. CT scans can be used as an alternative to time-consuming RT-PCR testing for COVID-19. This research work proposes a segmentation approach to identifying ground glass opacity or ROI in CT images developed by coronavirus, with a modified structure of the Unet model having been used to classify the region of interest at the pixel level. The problem with segmentation is that the GGO often appears indistinguishable from a healthy lung in the initial stages of COVID-19, and so, to cope with this, the increased set of weights in contracting and expanding the Unet path and an improved convolutional module is added in order to establish the connection between the encoder and decoder pipeline. This has a major capacity to segment the GGO in the case of COVID-19, with the proposed model being referred to as “convUnet.” The experiment was performed on the Medseg1 dataset, and the addition of a set of weights at each layer of the model and modification in the connected module in Unet led to an improvement in overall segmentation results. The quantitative results obtained using accuracy, recall, precision, dice-coefficient, F1score, and IOU were 93.29%, 93.01%, 93.67%, 92.46%, 93.34%, 86.96%, respectively, which is better than that obtained using Unet and other state-of-the-art models. Therefore, this segmentation approach proved to be more accurate, fast, and reliable in helping doctors to diagnose COVID-19 quickly and efficiently.</description><subject>COVID-19 - diagnostic imaging</subject><subject>COVID-19 Testing</subject><subject>Humans</subject><subject>Image Processing, Computer-Assisted - methods</subject><subject>Lung - diagnostic imaging</subject><subject>Tomography, X-Ray Computed - methods</subject><issn>2040-2295</issn><issn>2040-2309</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>RHX</sourceid><sourceid>EIF</sourceid><recordid>eNp9kctLw0AQxhdRbKm9eZYcBY3dnU022YtQ6qtS6UHrddkmk3QlydY8FP97E_tALw4sM8P8-GbYj5BTRq8Y8_0RUICR8IWQIRyQPlCPusCpPNzVIP0eGVbVG22DS-4xfkx63PfaSUj75HHc1DbXtYmcyfx1euMy6cyaInWmRYJRbWzhPGOaY1Hrn6ZelbZJV86TjU1iMHYWBdZdh9kJOUp0VuFwmwdkcXf7MnlwZ_P76WQ8cyMPaO0KGTBsX8RAgBABp2GkkWOAS7lELwQ_1tKHxAsTKnQCErQWImY6TmQsIeADcr3RXTfLHOOova3UmVqXJtfll7LaqL-TwqxUaj-UpBQk9VqB861Aad8brGqVmyrCLNMF2qZSIHwmJBVBt-tyg0alraoSk_0aRlXngOocUFsHWvzs92l7ePffLXCxAVamiPWn-V_uGwv7jOc</recordid><startdate>20220411</startdate><enddate>20220411</enddate><creator>Shamim, Sania</creator><creator>Awan, Mazhar Javed</creator><creator>Mohd Zain, Azlan</creator><creator>Naseem, Usman</creator><creator>Mohammed, Mazin Abed</creator><creator>Garcia-Zapirain, Begonya</creator><general>Hindawi</general><scope>RHU</scope><scope>RHW</scope><scope>RHX</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0003-2004-3289</orcidid><orcidid>https://orcid.org/0000-0002-1931-9607</orcidid><orcidid>https://orcid.org/0000-0003-0191-7171</orcidid><orcidid>https://orcid.org/0000-0001-9030-8102</orcidid><orcidid>https://orcid.org/0000-0003-3535-8005</orcidid><orcidid>https://orcid.org/0000-0002-9356-1186</orcidid></search><sort><creationdate>20220411</creationdate><title>Automatic COVID-19 Lung Infection Segmentation through Modified Unet Model</title><author>Shamim, Sania ; Awan, Mazhar Javed ; Mohd Zain, Azlan ; Naseem, Usman ; Mohammed, Mazin Abed ; Garcia-Zapirain, Begonya</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c420t-6971e971c1262667308cae3e7eb9be4825da952f48f06af292aa66d1adf9d9273</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>COVID-19 - diagnostic imaging</topic><topic>COVID-19 Testing</topic><topic>Humans</topic><topic>Image Processing, Computer-Assisted - methods</topic><topic>Lung - diagnostic imaging</topic><topic>Tomography, X-Ray Computed - methods</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Shamim, Sania</creatorcontrib><creatorcontrib>Awan, Mazhar Javed</creatorcontrib><creatorcontrib>Mohd Zain, Azlan</creatorcontrib><creatorcontrib>Naseem, Usman</creatorcontrib><creatorcontrib>Mohammed, Mazin Abed</creatorcontrib><creatorcontrib>Garcia-Zapirain, Begonya</creatorcontrib><collection>Hindawi Publishing Complete</collection><collection>Hindawi Publishing Subscription Journals</collection><collection>Hindawi Publishing Open Access</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of healthcare engineering</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Shamim, Sania</au><au>Awan, Mazhar Javed</au><au>Mohd Zain, Azlan</au><au>Naseem, Usman</au><au>Mohammed, Mazin Abed</au><au>Garcia-Zapirain, Begonya</au><au>Khan, Sahfqat Ullah</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Automatic COVID-19 Lung Infection Segmentation through Modified Unet Model</atitle><jtitle>Journal of healthcare engineering</jtitle><addtitle>J Healthc Eng</addtitle><date>2022-04-11</date><risdate>2022</risdate><volume>2022</volume><spage>6566982</spage><epage>13</epage><pages>6566982-13</pages><issn>2040-2295</issn><eissn>2040-2309</eissn><abstract>The coronavirus (COVID-19) pandemic has had a terrible impact on human lives globally, with far-reaching consequences for the health and well-being of many people around the world. 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This has a major capacity to segment the GGO in the case of COVID-19, with the proposed model being referred to as “convUnet.” The experiment was performed on the Medseg1 dataset, and the addition of a set of weights at each layer of the model and modification in the connected module in Unet led to an improvement in overall segmentation results. The quantitative results obtained using accuracy, recall, precision, dice-coefficient, F1score, and IOU were 93.29%, 93.01%, 93.67%, 92.46%, 93.34%, 86.96%, respectively, which is better than that obtained using Unet and other state-of-the-art models. 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subjects | COVID-19 - diagnostic imaging COVID-19 Testing Humans Image Processing, Computer-Assisted - methods Lung - diagnostic imaging Tomography, X-Ray Computed - methods |
title | Automatic COVID-19 Lung Infection Segmentation through Modified Unet Model |
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