16S rRNA Gene Sequence Identification of Cultivable-Bacterioplankton Between Ambient Water and Gastrointestinal Tract (GIT) of Resident Teleost
This study was conducted to evaluate the ambient water bacterial dynamics and its influence on the gut of resident teleosts; Oreochromis niloticus . The bacterial communities in the ambient water and the gastrointestinal tract (GIT) of O . niloticus were profiled using a culture-dependent method and...
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| Veröffentlicht in: | Indian journal of microbiology 2022-06, Vol.62 (2), p.187-194 |
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| container_title | Indian journal of microbiology |
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| creator | Fatsi, Patrick Senam Kofi Appiah, Ebenezer Koranteng Ogasawara, Chogo Tettey, Pamela Afi Hashem, Shaharior Saito, Hidetoshi Kawai, Koichiro |
| description | This study was conducted to evaluate the ambient water bacterial dynamics and its influence on the gut of resident teleosts;
Oreochromis niloticus
. The bacterial communities in the ambient water and the gastrointestinal tract (GIT) of
O
.
niloticus
were profiled using a culture-dependent method and followed by the 16S rRNA gene sequencing. The results indicated bacterial phyla of
Proteobacteria
,
Actinobacteria
,
Bacteroidetes
, and
Firmicutes
respectively between the two microbial consortia. However, the relative abundance among the bacterial phyla notably differed between the two consortia. The relative abundance of
Proteobacteria
(≤ 67%) was dominant in both consortia, but contrarily,
Actinobacteria
and
Bacteroidetes
were higher in the ambient water relative to the GIT which indicated
Proteobacteria
and
Bacilli
as the highest diversity. Nevertheless, the relative abundance of
γ-proteobacteria
and
Bacilli
remarkably dominated both consortia at the class level, with
Bacillus
and
Pseudomonas
being the most abundant operational taxonomic units (OTUs). |
| doi_str_mv | 10.1007/s12088-021-00992-w |
| format | Article |
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Oreochromis niloticus
. The bacterial communities in the ambient water and the gastrointestinal tract (GIT) of
O
.
niloticus
were profiled using a culture-dependent method and followed by the 16S rRNA gene sequencing. The results indicated bacterial phyla of
Proteobacteria
,
Actinobacteria
,
Bacteroidetes
, and
Firmicutes
respectively between the two microbial consortia. However, the relative abundance among the bacterial phyla notably differed between the two consortia. The relative abundance of
Proteobacteria
(≤ 67%) was dominant in both consortia, but contrarily,
Actinobacteria
and
Bacteroidetes
were higher in the ambient water relative to the GIT which indicated
Proteobacteria
and
Bacilli
as the highest diversity. Nevertheless, the relative abundance of
γ-proteobacteria
and
Bacilli
remarkably dominated both consortia at the class level, with
Bacillus
and
Pseudomonas
being the most abundant operational taxonomic units (OTUs).</description><identifier>ISSN: 0046-8991</identifier><identifier>EISSN: 0973-7715</identifier><identifier>DOI: 10.1007/s12088-021-00992-w</identifier><identifier>PMID: 35462721</identifier><language>eng</language><publisher>New Delhi: Springer India</publisher><subject>Actinobacteria ; Bacilli ; Bacteria ; Bacterioplankton ; Bacteroidetes ; Biomedical and Life Sciences ; Consortia ; DNA sequencing ; Gastrointestinal system ; Gastrointestinal tract ; Gene sequencing ; Life Sciences ; Medical Microbiology ; Microbiology ; Microorganisms ; Oreochromis niloticus ; Original ; Original Research Article ; Proteobacteria ; Pseudomonas ; Relative abundance ; rRNA 16S</subject><ispartof>Indian journal of microbiology, 2022-06, Vol.62 (2), p.187-194</ispartof><rights>Association of Microbiologists of India 2021</rights><rights>Association of Microbiologists of India 2021.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c474t-db43d462d2394c0b6a101dc0c902ee65dbebebcae6e1639ff56d3ed1d22ceae93</citedby><cites>FETCH-LOGICAL-c474t-db43d462d2394c0b6a101dc0c902ee65dbebebcae6e1639ff56d3ed1d22ceae93</cites><orcidid>0000-0002-8359-9404</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8980131/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8980131/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,41488,42557,51319,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35462721$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Fatsi, Patrick Senam Kofi</creatorcontrib><creatorcontrib>Appiah, Ebenezer Koranteng</creatorcontrib><creatorcontrib>Ogasawara, Chogo</creatorcontrib><creatorcontrib>Tettey, Pamela Afi</creatorcontrib><creatorcontrib>Hashem, Shaharior</creatorcontrib><creatorcontrib>Saito, Hidetoshi</creatorcontrib><creatorcontrib>Kawai, Koichiro</creatorcontrib><title>16S rRNA Gene Sequence Identification of Cultivable-Bacterioplankton Between Ambient Water and Gastrointestinal Tract (GIT) of Resident Teleost</title><title>Indian journal of microbiology</title><addtitle>Indian J Microbiol</addtitle><addtitle>Indian J Microbiol</addtitle><description>This study was conducted to evaluate the ambient water bacterial dynamics and its influence on the gut of resident teleosts;
Oreochromis niloticus
. The bacterial communities in the ambient water and the gastrointestinal tract (GIT) of
O
.
niloticus
were profiled using a culture-dependent method and followed by the 16S rRNA gene sequencing. The results indicated bacterial phyla of
Proteobacteria
,
Actinobacteria
,
Bacteroidetes
, and
Firmicutes
respectively between the two microbial consortia. However, the relative abundance among the bacterial phyla notably differed between the two consortia. The relative abundance of
Proteobacteria
(≤ 67%) was dominant in both consortia, but contrarily,
Actinobacteria
and
Bacteroidetes
were higher in the ambient water relative to the GIT which indicated
Proteobacteria
and
Bacilli
as the highest diversity. Nevertheless, the relative abundance of
γ-proteobacteria
and
Bacilli
remarkably dominated both consortia at the class level, with
Bacillus
and
Pseudomonas
being the most abundant operational taxonomic units (OTUs).</description><subject>Actinobacteria</subject><subject>Bacilli</subject><subject>Bacteria</subject><subject>Bacterioplankton</subject><subject>Bacteroidetes</subject><subject>Biomedical and Life Sciences</subject><subject>Consortia</subject><subject>DNA sequencing</subject><subject>Gastrointestinal system</subject><subject>Gastrointestinal tract</subject><subject>Gene sequencing</subject><subject>Life Sciences</subject><subject>Medical Microbiology</subject><subject>Microbiology</subject><subject>Microorganisms</subject><subject>Oreochromis niloticus</subject><subject>Original</subject><subject>Original Research Article</subject><subject>Proteobacteria</subject><subject>Pseudomonas</subject><subject>Relative abundance</subject><subject>rRNA 16S</subject><issn>0046-8991</issn><issn>0973-7715</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><recordid>eNp9Uctu1DAUjRCIlsIPsECW2JSFwY_EiTdI0xEMI1UgtYNYWo59U1wy9mA7HfEV_DIOU8pjgby4ls7jPk5VPaXkJSWkfZUoI12HCaOYECkZ3t-rjolsOW5b2twvf1IL3ElJj6pHKV0T0ggpmofVEW9qwVpGj6vvVFyiePF-gVbgAV3C1wm8AbS24LMbnNHZBY_CgJbTmN2N7kfAZ9pkiC7sRu2_5AKfQd4DeLTY9q7o0CddcKS9RSudcgzOZ0jZeT2iTSxidLpab17MrheQ3NwKbWCEkPLj6sGgxwRPbutJ9fHtm83yHT7_sFovF-fY1G2dse1rbssOlnFZG9ILTQm1hhhJGIBobA_lGQ0CqOByGBphOVhqGTOgQfKT6vXBdzf1W7CmjBD1qHbRbXX8poJ26m_Eu8_qKtyoTnaEcloMTm8NYig3S1ltXTIwlpNAmJJiomko4bSeqc__oV6HKZZjzKy6RFISmlnswDIxpBRhuBuGEjXnrQ55q5K3-pm32hfRsz_XuJP8CrgQ-IGQCuSvIP7u_R_bH2djuZ8</recordid><startdate>20220601</startdate><enddate>20220601</enddate><creator>Fatsi, Patrick Senam Kofi</creator><creator>Appiah, Ebenezer Koranteng</creator><creator>Ogasawara, Chogo</creator><creator>Tettey, Pamela Afi</creator><creator>Hashem, Shaharior</creator><creator>Saito, Hidetoshi</creator><creator>Kawai, Koichiro</creator><general>Springer India</general><general>Springer Nature B.V</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7T7</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>K9.</scope><scope>P64</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-8359-9404</orcidid></search><sort><creationdate>20220601</creationdate><title>16S rRNA Gene Sequence Identification of Cultivable-Bacterioplankton Between Ambient Water and Gastrointestinal Tract (GIT) of Resident Teleost</title><author>Fatsi, Patrick Senam Kofi ; Appiah, Ebenezer Koranteng ; Ogasawara, Chogo ; Tettey, Pamela Afi ; Hashem, Shaharior ; Saito, Hidetoshi ; Kawai, Koichiro</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c474t-db43d462d2394c0b6a101dc0c902ee65dbebebcae6e1639ff56d3ed1d22ceae93</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Actinobacteria</topic><topic>Bacilli</topic><topic>Bacteria</topic><topic>Bacterioplankton</topic><topic>Bacteroidetes</topic><topic>Biomedical and Life Sciences</topic><topic>Consortia</topic><topic>DNA sequencing</topic><topic>Gastrointestinal system</topic><topic>Gastrointestinal tract</topic><topic>Gene sequencing</topic><topic>Life Sciences</topic><topic>Medical Microbiology</topic><topic>Microbiology</topic><topic>Microorganisms</topic><topic>Oreochromis niloticus</topic><topic>Original</topic><topic>Original Research Article</topic><topic>Proteobacteria</topic><topic>Pseudomonas</topic><topic>Relative abundance</topic><topic>rRNA 16S</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Fatsi, Patrick Senam Kofi</creatorcontrib><creatorcontrib>Appiah, Ebenezer Koranteng</creatorcontrib><creatorcontrib>Ogasawara, Chogo</creatorcontrib><creatorcontrib>Tettey, Pamela Afi</creatorcontrib><creatorcontrib>Hashem, Shaharior</creatorcontrib><creatorcontrib>Saito, Hidetoshi</creatorcontrib><creatorcontrib>Kawai, Koichiro</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Indian journal of microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Fatsi, Patrick Senam Kofi</au><au>Appiah, Ebenezer Koranteng</au><au>Ogasawara, Chogo</au><au>Tettey, Pamela Afi</au><au>Hashem, Shaharior</au><au>Saito, Hidetoshi</au><au>Kawai, Koichiro</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>16S rRNA Gene Sequence Identification of Cultivable-Bacterioplankton Between Ambient Water and Gastrointestinal Tract (GIT) of Resident Teleost</atitle><jtitle>Indian journal of microbiology</jtitle><stitle>Indian J Microbiol</stitle><addtitle>Indian J Microbiol</addtitle><date>2022-06-01</date><risdate>2022</risdate><volume>62</volume><issue>2</issue><spage>187</spage><epage>194</epage><pages>187-194</pages><issn>0046-8991</issn><eissn>0973-7715</eissn><abstract>This study was conducted to evaluate the ambient water bacterial dynamics and its influence on the gut of resident teleosts;
Oreochromis niloticus
. The bacterial communities in the ambient water and the gastrointestinal tract (GIT) of
O
.
niloticus
were profiled using a culture-dependent method and followed by the 16S rRNA gene sequencing. The results indicated bacterial phyla of
Proteobacteria
,
Actinobacteria
,
Bacteroidetes
, and
Firmicutes
respectively between the two microbial consortia. However, the relative abundance among the bacterial phyla notably differed between the two consortia. The relative abundance of
Proteobacteria
(≤ 67%) was dominant in both consortia, but contrarily,
Actinobacteria
and
Bacteroidetes
were higher in the ambient water relative to the GIT which indicated
Proteobacteria
and
Bacilli
as the highest diversity. Nevertheless, the relative abundance of
γ-proteobacteria
and
Bacilli
remarkably dominated both consortia at the class level, with
Bacillus
and
Pseudomonas
being the most abundant operational taxonomic units (OTUs).</abstract><cop>New Delhi</cop><pub>Springer India</pub><pmid>35462721</pmid><doi>10.1007/s12088-021-00992-w</doi><tpages>8</tpages><orcidid>https://orcid.org/0000-0002-8359-9404</orcidid><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0046-8991 |
| ispartof | Indian journal of microbiology, 2022-06, Vol.62 (2), p.187-194 |
| issn | 0046-8991 0973-7715 |
| language | eng |
| recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_8980131 |
| source | SpringerNature Journals; EZB-FREE-00999 freely available EZB journals; PubMed Central |
| subjects | Actinobacteria Bacilli Bacteria Bacterioplankton Bacteroidetes Biomedical and Life Sciences Consortia DNA sequencing Gastrointestinal system Gastrointestinal tract Gene sequencing Life Sciences Medical Microbiology Microbiology Microorganisms Oreochromis niloticus Original Original Research Article Proteobacteria Pseudomonas Relative abundance rRNA 16S |
| title | 16S rRNA Gene Sequence Identification of Cultivable-Bacterioplankton Between Ambient Water and Gastrointestinal Tract (GIT) of Resident Teleost |
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