Dynamic modeling of hospitalized COVID-19 patients reveals disease state–dependent risk factors
Abstract Objective The study sought to investigate the disease state–dependent risk profiles of patient demographics and medical comorbidities associated with adverse outcomes of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections. Materials and Methods A covariate-dependent, con...
Gespeichert in:
Veröffentlicht in: | Journal of the American Medical Informatics Association : JAMIA 2022-04, Vol.29 (5), p.864-872 |
---|---|
Hauptverfasser: | , , , , , , , , , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 872 |
---|---|
container_issue | 5 |
container_start_page | 864 |
container_title | Journal of the American Medical Informatics Association : JAMIA |
container_volume | 29 |
creator | Soper, Braden C Cadena, Jose Nguyen, Sam Chan, Kwan Ho Ryan Kiszka, Paul Womack, Lucas Work, Mark Duggan, Joan M Haller, Steven T Hanrahan, Jennifer A Kennedy, David J Mukundan, Deepa Ray, Priyadip |
description | Abstract
Objective
The study sought to investigate the disease state–dependent risk profiles of patient demographics and medical comorbidities associated with adverse outcomes of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections.
Materials and Methods
A covariate-dependent, continuous-time hidden Markov model with 4 states (moderate, severe, discharged, and deceased) was used to model the dynamic progression of COVID-19 during the course of hospitalization. All model parameters were estimated using the electronic health records of 1362 patients from ProMedica Health System admitted between March 20, 2020 and December 29, 2020 with a positive nasopharyngeal PCR test for SARS-CoV-2. Demographic characteristics, comorbidities, vital signs, and laboratory test results were retrospectively evaluated to infer a patient’s clinical progression.
Results
The association between patient-level covariates and risk of progression was found to be disease state dependent. Specifically, while being male, being Black or having a medical comorbidity were all associated with an increased risk of progressing from the moderate disease state to the severe disease state, these same factors were associated with a decreased risk of progressing from the severe disease state to the deceased state.
Discussion
Recent studies have not included analyses of the temporal progression of COVID-19, making the current study a unique modeling-based approach to understand the dynamics of COVID-19 in hospitalized patients.
Conclusion
Dynamic risk stratification models have the potential to improve clinical outcomes not only in COVID-19, but also in a myriad of other acute and chronic diseases that, to date, have largely been assessed only by static modeling techniques. |
doi_str_mv | 10.1093/jamia/ocac012 |
format | Article |
fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_8903413</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><oup_id>10.1093/jamia/ocac012</oup_id><sourcerecordid>2627132739</sourcerecordid><originalsourceid>FETCH-LOGICAL-c420t-fae472e515243b6bbfa1e893cdfa7829ac89d531470ab82f20813a324b4f8c4e3</originalsourceid><addsrcrecordid>eNqFkU1P3DAQhi0E4vvYa-Ujl3T9lU18QUJLKUhIXGjVmzVxxrumSRzsLNL2xH_gH_JLCLBQOPU0I82jZ17pJeQLZ98403JyA62HSbBgGRcbZJfnosh0oX5vfth3yF5KN4zxqZD5NtmROZcFV3qXwOmqGw2WtqHGxndzGhxdhNT7ARr_F2s6u_p1cZpxTXsYPHZDohHvEJpEa58QEtI0wICP9w819tjVI0KjT3-oAzuEmA7IlhtpPFzPffLz7Pv17Dy7vPpxMTu5zKwSbMgcoCoE5mNmJatpVTngWGppawdFKTTYUte55KpgUJXCCVZyCVKoSrnSKpT75PjV2y-rFms75ojQmD76FuLKBPDm86XzCzMPd6bUTCouR8HRWhDD7RLTYFqfLDYNdBiWyYipKLgUhdQjmr2iNoaUIrr3N5yZ51rMSy1mXcvIf_2Y7Z1-6-Hf77Ds_-N6Ak6km68</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2627132739</pqid></control><display><type>article</type><title>Dynamic modeling of hospitalized COVID-19 patients reveals disease state–dependent risk factors</title><source>Oxford University Press Journals All Titles (1996-Current)</source><source>MEDLINE</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>PubMed Central</source><creator>Soper, Braden C ; Cadena, Jose ; Nguyen, Sam ; Chan, Kwan Ho Ryan ; Kiszka, Paul ; Womack, Lucas ; Work, Mark ; Duggan, Joan M ; Haller, Steven T ; Hanrahan, Jennifer A ; Kennedy, David J ; Mukundan, Deepa ; Ray, Priyadip</creator><creatorcontrib>Soper, Braden C ; Cadena, Jose ; Nguyen, Sam ; Chan, Kwan Ho Ryan ; Kiszka, Paul ; Womack, Lucas ; Work, Mark ; Duggan, Joan M ; Haller, Steven T ; Hanrahan, Jennifer A ; Kennedy, David J ; Mukundan, Deepa ; Ray, Priyadip</creatorcontrib><description>Abstract
Objective
The study sought to investigate the disease state–dependent risk profiles of patient demographics and medical comorbidities associated with adverse outcomes of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections.
Materials and Methods
A covariate-dependent, continuous-time hidden Markov model with 4 states (moderate, severe, discharged, and deceased) was used to model the dynamic progression of COVID-19 during the course of hospitalization. All model parameters were estimated using the electronic health records of 1362 patients from ProMedica Health System admitted between March 20, 2020 and December 29, 2020 with a positive nasopharyngeal PCR test for SARS-CoV-2. Demographic characteristics, comorbidities, vital signs, and laboratory test results were retrospectively evaluated to infer a patient’s clinical progression.
Results
The association between patient-level covariates and risk of progression was found to be disease state dependent. Specifically, while being male, being Black or having a medical comorbidity were all associated with an increased risk of progressing from the moderate disease state to the severe disease state, these same factors were associated with a decreased risk of progressing from the severe disease state to the deceased state.
Discussion
Recent studies have not included analyses of the temporal progression of COVID-19, making the current study a unique modeling-based approach to understand the dynamics of COVID-19 in hospitalized patients.
Conclusion
Dynamic risk stratification models have the potential to improve clinical outcomes not only in COVID-19, but also in a myriad of other acute and chronic diseases that, to date, have largely been assessed only by static modeling techniques.</description><identifier>ISSN: 1527-974X</identifier><identifier>ISSN: 1067-5027</identifier><identifier>EISSN: 1527-974X</identifier><identifier>DOI: 10.1093/jamia/ocac012</identifier><identifier>PMID: 35137149</identifier><language>eng</language><publisher>England: Oxford University Press</publisher><subject>Comorbidity ; COVID-19 ; Female ; Hospitalization ; Humans ; Male ; Research and Applications ; Retrospective Studies ; Risk Factors ; SARS-CoV-2</subject><ispartof>Journal of the American Medical Informatics Association : JAMIA, 2022-04, Vol.29 (5), p.864-872</ispartof><rights>The Author(s) 2022. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com 2022</rights><rights>The Author(s) 2022. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c420t-fae472e515243b6bbfa1e893cdfa7829ac89d531470ab82f20813a324b4f8c4e3</citedby><cites>FETCH-LOGICAL-c420t-fae472e515243b6bbfa1e893cdfa7829ac89d531470ab82f20813a324b4f8c4e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8903413/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8903413/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,1578,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35137149$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Soper, Braden C</creatorcontrib><creatorcontrib>Cadena, Jose</creatorcontrib><creatorcontrib>Nguyen, Sam</creatorcontrib><creatorcontrib>Chan, Kwan Ho Ryan</creatorcontrib><creatorcontrib>Kiszka, Paul</creatorcontrib><creatorcontrib>Womack, Lucas</creatorcontrib><creatorcontrib>Work, Mark</creatorcontrib><creatorcontrib>Duggan, Joan M</creatorcontrib><creatorcontrib>Haller, Steven T</creatorcontrib><creatorcontrib>Hanrahan, Jennifer A</creatorcontrib><creatorcontrib>Kennedy, David J</creatorcontrib><creatorcontrib>Mukundan, Deepa</creatorcontrib><creatorcontrib>Ray, Priyadip</creatorcontrib><title>Dynamic modeling of hospitalized COVID-19 patients reveals disease state–dependent risk factors</title><title>Journal of the American Medical Informatics Association : JAMIA</title><addtitle>J Am Med Inform Assoc</addtitle><description>Abstract
Objective
The study sought to investigate the disease state–dependent risk profiles of patient demographics and medical comorbidities associated with adverse outcomes of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections.
Materials and Methods
A covariate-dependent, continuous-time hidden Markov model with 4 states (moderate, severe, discharged, and deceased) was used to model the dynamic progression of COVID-19 during the course of hospitalization. All model parameters were estimated using the electronic health records of 1362 patients from ProMedica Health System admitted between March 20, 2020 and December 29, 2020 with a positive nasopharyngeal PCR test for SARS-CoV-2. Demographic characteristics, comorbidities, vital signs, and laboratory test results were retrospectively evaluated to infer a patient’s clinical progression.
Results
The association between patient-level covariates and risk of progression was found to be disease state dependent. Specifically, while being male, being Black or having a medical comorbidity were all associated with an increased risk of progressing from the moderate disease state to the severe disease state, these same factors were associated with a decreased risk of progressing from the severe disease state to the deceased state.
Discussion
Recent studies have not included analyses of the temporal progression of COVID-19, making the current study a unique modeling-based approach to understand the dynamics of COVID-19 in hospitalized patients.
Conclusion
Dynamic risk stratification models have the potential to improve clinical outcomes not only in COVID-19, but also in a myriad of other acute and chronic diseases that, to date, have largely been assessed only by static modeling techniques.</description><subject>Comorbidity</subject><subject>COVID-19</subject><subject>Female</subject><subject>Hospitalization</subject><subject>Humans</subject><subject>Male</subject><subject>Research and Applications</subject><subject>Retrospective Studies</subject><subject>Risk Factors</subject><subject>SARS-CoV-2</subject><issn>1527-974X</issn><issn>1067-5027</issn><issn>1527-974X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkU1P3DAQhi0E4vvYa-Ujl3T9lU18QUJLKUhIXGjVmzVxxrumSRzsLNL2xH_gH_JLCLBQOPU0I82jZ17pJeQLZ98403JyA62HSbBgGRcbZJfnosh0oX5vfth3yF5KN4zxqZD5NtmROZcFV3qXwOmqGw2WtqHGxndzGhxdhNT7ARr_F2s6u_p1cZpxTXsYPHZDohHvEJpEa58QEtI0wICP9w819tjVI0KjT3-oAzuEmA7IlhtpPFzPffLz7Pv17Dy7vPpxMTu5zKwSbMgcoCoE5mNmJatpVTngWGppawdFKTTYUte55KpgUJXCCVZyCVKoSrnSKpT75PjV2y-rFms75ojQmD76FuLKBPDm86XzCzMPd6bUTCouR8HRWhDD7RLTYFqfLDYNdBiWyYipKLgUhdQjmr2iNoaUIrr3N5yZ51rMSy1mXcvIf_2Y7Z1-6-Hf77Ds_-N6Ak6km68</recordid><startdate>20220413</startdate><enddate>20220413</enddate><creator>Soper, Braden C</creator><creator>Cadena, Jose</creator><creator>Nguyen, Sam</creator><creator>Chan, Kwan Ho Ryan</creator><creator>Kiszka, Paul</creator><creator>Womack, Lucas</creator><creator>Work, Mark</creator><creator>Duggan, Joan M</creator><creator>Haller, Steven T</creator><creator>Hanrahan, Jennifer A</creator><creator>Kennedy, David J</creator><creator>Mukundan, Deepa</creator><creator>Ray, Priyadip</creator><general>Oxford University Press</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20220413</creationdate><title>Dynamic modeling of hospitalized COVID-19 patients reveals disease state–dependent risk factors</title><author>Soper, Braden C ; Cadena, Jose ; Nguyen, Sam ; Chan, Kwan Ho Ryan ; Kiszka, Paul ; Womack, Lucas ; Work, Mark ; Duggan, Joan M ; Haller, Steven T ; Hanrahan, Jennifer A ; Kennedy, David J ; Mukundan, Deepa ; Ray, Priyadip</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c420t-fae472e515243b6bbfa1e893cdfa7829ac89d531470ab82f20813a324b4f8c4e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Comorbidity</topic><topic>COVID-19</topic><topic>Female</topic><topic>Hospitalization</topic><topic>Humans</topic><topic>Male</topic><topic>Research and Applications</topic><topic>Retrospective Studies</topic><topic>Risk Factors</topic><topic>SARS-CoV-2</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Soper, Braden C</creatorcontrib><creatorcontrib>Cadena, Jose</creatorcontrib><creatorcontrib>Nguyen, Sam</creatorcontrib><creatorcontrib>Chan, Kwan Ho Ryan</creatorcontrib><creatorcontrib>Kiszka, Paul</creatorcontrib><creatorcontrib>Womack, Lucas</creatorcontrib><creatorcontrib>Work, Mark</creatorcontrib><creatorcontrib>Duggan, Joan M</creatorcontrib><creatorcontrib>Haller, Steven T</creatorcontrib><creatorcontrib>Hanrahan, Jennifer A</creatorcontrib><creatorcontrib>Kennedy, David J</creatorcontrib><creatorcontrib>Mukundan, Deepa</creatorcontrib><creatorcontrib>Ray, Priyadip</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of the American Medical Informatics Association : JAMIA</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Soper, Braden C</au><au>Cadena, Jose</au><au>Nguyen, Sam</au><au>Chan, Kwan Ho Ryan</au><au>Kiszka, Paul</au><au>Womack, Lucas</au><au>Work, Mark</au><au>Duggan, Joan M</au><au>Haller, Steven T</au><au>Hanrahan, Jennifer A</au><au>Kennedy, David J</au><au>Mukundan, Deepa</au><au>Ray, Priyadip</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Dynamic modeling of hospitalized COVID-19 patients reveals disease state–dependent risk factors</atitle><jtitle>Journal of the American Medical Informatics Association : JAMIA</jtitle><addtitle>J Am Med Inform Assoc</addtitle><date>2022-04-13</date><risdate>2022</risdate><volume>29</volume><issue>5</issue><spage>864</spage><epage>872</epage><pages>864-872</pages><issn>1527-974X</issn><issn>1067-5027</issn><eissn>1527-974X</eissn><abstract>Abstract
Objective
The study sought to investigate the disease state–dependent risk profiles of patient demographics and medical comorbidities associated with adverse outcomes of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections.
Materials and Methods
A covariate-dependent, continuous-time hidden Markov model with 4 states (moderate, severe, discharged, and deceased) was used to model the dynamic progression of COVID-19 during the course of hospitalization. All model parameters were estimated using the electronic health records of 1362 patients from ProMedica Health System admitted between March 20, 2020 and December 29, 2020 with a positive nasopharyngeal PCR test for SARS-CoV-2. Demographic characteristics, comorbidities, vital signs, and laboratory test results were retrospectively evaluated to infer a patient’s clinical progression.
Results
The association between patient-level covariates and risk of progression was found to be disease state dependent. Specifically, while being male, being Black or having a medical comorbidity were all associated with an increased risk of progressing from the moderate disease state to the severe disease state, these same factors were associated with a decreased risk of progressing from the severe disease state to the deceased state.
Discussion
Recent studies have not included analyses of the temporal progression of COVID-19, making the current study a unique modeling-based approach to understand the dynamics of COVID-19 in hospitalized patients.
Conclusion
Dynamic risk stratification models have the potential to improve clinical outcomes not only in COVID-19, but also in a myriad of other acute and chronic diseases that, to date, have largely been assessed only by static modeling techniques.</abstract><cop>England</cop><pub>Oxford University Press</pub><pmid>35137149</pmid><doi>10.1093/jamia/ocac012</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 1527-974X |
ispartof | Journal of the American Medical Informatics Association : JAMIA, 2022-04, Vol.29 (5), p.864-872 |
issn | 1527-974X 1067-5027 1527-974X |
language | eng |
recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_8903413 |
source | Oxford University Press Journals All Titles (1996-Current); MEDLINE; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central |
subjects | Comorbidity COVID-19 Female Hospitalization Humans Male Research and Applications Retrospective Studies Risk Factors SARS-CoV-2 |
title | Dynamic modeling of hospitalized COVID-19 patients reveals disease state–dependent risk factors |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-09T06%3A37%3A56IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Dynamic%20modeling%20of%20hospitalized%20COVID-19%20patients%20reveals%20disease%20state%E2%80%93dependent%20risk%20factors&rft.jtitle=Journal%20of%20the%20American%20Medical%20Informatics%20Association%20:%20JAMIA&rft.au=Soper,%20Braden%20C&rft.date=2022-04-13&rft.volume=29&rft.issue=5&rft.spage=864&rft.epage=872&rft.pages=864-872&rft.issn=1527-974X&rft.eissn=1527-974X&rft_id=info:doi/10.1093/jamia/ocac012&rft_dat=%3Cproquest_pubme%3E2627132739%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2627132739&rft_id=info:pmid/35137149&rft_oup_id=10.1093/jamia/ocac012&rfr_iscdi=true |