Dynamic modeling of hospitalized COVID-19 patients reveals disease state–dependent risk factors

Abstract Objective The study sought to investigate the disease state–dependent risk profiles of patient demographics and medical comorbidities associated with adverse outcomes of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections. Materials and Methods A covariate-dependent, con...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Journal of the American Medical Informatics Association : JAMIA 2022-04, Vol.29 (5), p.864-872
Hauptverfasser: Soper, Braden C, Cadena, Jose, Nguyen, Sam, Chan, Kwan Ho Ryan, Kiszka, Paul, Womack, Lucas, Work, Mark, Duggan, Joan M, Haller, Steven T, Hanrahan, Jennifer A, Kennedy, David J, Mukundan, Deepa, Ray, Priyadip
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 872
container_issue 5
container_start_page 864
container_title Journal of the American Medical Informatics Association : JAMIA
container_volume 29
creator Soper, Braden C
Cadena, Jose
Nguyen, Sam
Chan, Kwan Ho Ryan
Kiszka, Paul
Womack, Lucas
Work, Mark
Duggan, Joan M
Haller, Steven T
Hanrahan, Jennifer A
Kennedy, David J
Mukundan, Deepa
Ray, Priyadip
description Abstract Objective The study sought to investigate the disease state–dependent risk profiles of patient demographics and medical comorbidities associated with adverse outcomes of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections. Materials and Methods A covariate-dependent, continuous-time hidden Markov model with 4 states (moderate, severe, discharged, and deceased) was used to model the dynamic progression of COVID-19 during the course of hospitalization. All model parameters were estimated using the electronic health records of 1362 patients from ProMedica Health System admitted between March 20, 2020 and December 29, 2020 with a positive nasopharyngeal PCR test for SARS-CoV-2. Demographic characteristics, comorbidities, vital signs, and laboratory test results were retrospectively evaluated to infer a patient’s clinical progression. Results The association between patient-level covariates and risk of progression was found to be disease state dependent. Specifically, while being male, being Black or having a medical comorbidity were all associated with an increased risk of progressing from the moderate disease state to the severe disease state, these same factors were associated with a decreased risk of progressing from the severe disease state to the deceased state. Discussion Recent studies have not included analyses of the temporal progression of COVID-19, making the current study a unique modeling-based approach to understand the dynamics of COVID-19 in hospitalized patients. Conclusion Dynamic risk stratification models have the potential to improve clinical outcomes not only in COVID-19, but also in a myriad of other acute and chronic diseases that, to date, have largely been assessed only by static modeling techniques.
doi_str_mv 10.1093/jamia/ocac012
format Article
fullrecord <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_8903413</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><oup_id>10.1093/jamia/ocac012</oup_id><sourcerecordid>2627132739</sourcerecordid><originalsourceid>FETCH-LOGICAL-c420t-fae472e515243b6bbfa1e893cdfa7829ac89d531470ab82f20813a324b4f8c4e3</originalsourceid><addsrcrecordid>eNqFkU1P3DAQhi0E4vvYa-Ujl3T9lU18QUJLKUhIXGjVmzVxxrumSRzsLNL2xH_gH_JLCLBQOPU0I82jZ17pJeQLZ98403JyA62HSbBgGRcbZJfnosh0oX5vfth3yF5KN4zxqZD5NtmROZcFV3qXwOmqGw2WtqHGxndzGhxdhNT7ARr_F2s6u_p1cZpxTXsYPHZDohHvEJpEa58QEtI0wICP9w819tjVI0KjT3-oAzuEmA7IlhtpPFzPffLz7Pv17Dy7vPpxMTu5zKwSbMgcoCoE5mNmJatpVTngWGppawdFKTTYUte55KpgUJXCCVZyCVKoSrnSKpT75PjV2y-rFms75ojQmD76FuLKBPDm86XzCzMPd6bUTCouR8HRWhDD7RLTYFqfLDYNdBiWyYipKLgUhdQjmr2iNoaUIrr3N5yZ51rMSy1mXcvIf_2Y7Z1-6-Hf77Ds_-N6Ak6km68</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2627132739</pqid></control><display><type>article</type><title>Dynamic modeling of hospitalized COVID-19 patients reveals disease state–dependent risk factors</title><source>Oxford University Press Journals All Titles (1996-Current)</source><source>MEDLINE</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>PubMed Central</source><creator>Soper, Braden C ; Cadena, Jose ; Nguyen, Sam ; Chan, Kwan Ho Ryan ; Kiszka, Paul ; Womack, Lucas ; Work, Mark ; Duggan, Joan M ; Haller, Steven T ; Hanrahan, Jennifer A ; Kennedy, David J ; Mukundan, Deepa ; Ray, Priyadip</creator><creatorcontrib>Soper, Braden C ; Cadena, Jose ; Nguyen, Sam ; Chan, Kwan Ho Ryan ; Kiszka, Paul ; Womack, Lucas ; Work, Mark ; Duggan, Joan M ; Haller, Steven T ; Hanrahan, Jennifer A ; Kennedy, David J ; Mukundan, Deepa ; Ray, Priyadip</creatorcontrib><description>Abstract Objective The study sought to investigate the disease state–dependent risk profiles of patient demographics and medical comorbidities associated with adverse outcomes of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections. Materials and Methods A covariate-dependent, continuous-time hidden Markov model with 4 states (moderate, severe, discharged, and deceased) was used to model the dynamic progression of COVID-19 during the course of hospitalization. All model parameters were estimated using the electronic health records of 1362 patients from ProMedica Health System admitted between March 20, 2020 and December 29, 2020 with a positive nasopharyngeal PCR test for SARS-CoV-2. Demographic characteristics, comorbidities, vital signs, and laboratory test results were retrospectively evaluated to infer a patient’s clinical progression. Results The association between patient-level covariates and risk of progression was found to be disease state dependent. Specifically, while being male, being Black or having a medical comorbidity were all associated with an increased risk of progressing from the moderate disease state to the severe disease state, these same factors were associated with a decreased risk of progressing from the severe disease state to the deceased state. Discussion Recent studies have not included analyses of the temporal progression of COVID-19, making the current study a unique modeling-based approach to understand the dynamics of COVID-19 in hospitalized patients. Conclusion Dynamic risk stratification models have the potential to improve clinical outcomes not only in COVID-19, but also in a myriad of other acute and chronic diseases that, to date, have largely been assessed only by static modeling techniques.</description><identifier>ISSN: 1527-974X</identifier><identifier>ISSN: 1067-5027</identifier><identifier>EISSN: 1527-974X</identifier><identifier>DOI: 10.1093/jamia/ocac012</identifier><identifier>PMID: 35137149</identifier><language>eng</language><publisher>England: Oxford University Press</publisher><subject>Comorbidity ; COVID-19 ; Female ; Hospitalization ; Humans ; Male ; Research and Applications ; Retrospective Studies ; Risk Factors ; SARS-CoV-2</subject><ispartof>Journal of the American Medical Informatics Association : JAMIA, 2022-04, Vol.29 (5), p.864-872</ispartof><rights>The Author(s) 2022. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com 2022</rights><rights>The Author(s) 2022. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c420t-fae472e515243b6bbfa1e893cdfa7829ac89d531470ab82f20813a324b4f8c4e3</citedby><cites>FETCH-LOGICAL-c420t-fae472e515243b6bbfa1e893cdfa7829ac89d531470ab82f20813a324b4f8c4e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8903413/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8903413/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,1578,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35137149$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Soper, Braden C</creatorcontrib><creatorcontrib>Cadena, Jose</creatorcontrib><creatorcontrib>Nguyen, Sam</creatorcontrib><creatorcontrib>Chan, Kwan Ho Ryan</creatorcontrib><creatorcontrib>Kiszka, Paul</creatorcontrib><creatorcontrib>Womack, Lucas</creatorcontrib><creatorcontrib>Work, Mark</creatorcontrib><creatorcontrib>Duggan, Joan M</creatorcontrib><creatorcontrib>Haller, Steven T</creatorcontrib><creatorcontrib>Hanrahan, Jennifer A</creatorcontrib><creatorcontrib>Kennedy, David J</creatorcontrib><creatorcontrib>Mukundan, Deepa</creatorcontrib><creatorcontrib>Ray, Priyadip</creatorcontrib><title>Dynamic modeling of hospitalized COVID-19 patients reveals disease state–dependent risk factors</title><title>Journal of the American Medical Informatics Association : JAMIA</title><addtitle>J Am Med Inform Assoc</addtitle><description>Abstract Objective The study sought to investigate the disease state–dependent risk profiles of patient demographics and medical comorbidities associated with adverse outcomes of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections. Materials and Methods A covariate-dependent, continuous-time hidden Markov model with 4 states (moderate, severe, discharged, and deceased) was used to model the dynamic progression of COVID-19 during the course of hospitalization. All model parameters were estimated using the electronic health records of 1362 patients from ProMedica Health System admitted between March 20, 2020 and December 29, 2020 with a positive nasopharyngeal PCR test for SARS-CoV-2. Demographic characteristics, comorbidities, vital signs, and laboratory test results were retrospectively evaluated to infer a patient’s clinical progression. Results The association between patient-level covariates and risk of progression was found to be disease state dependent. Specifically, while being male, being Black or having a medical comorbidity were all associated with an increased risk of progressing from the moderate disease state to the severe disease state, these same factors were associated with a decreased risk of progressing from the severe disease state to the deceased state. Discussion Recent studies have not included analyses of the temporal progression of COVID-19, making the current study a unique modeling-based approach to understand the dynamics of COVID-19 in hospitalized patients. Conclusion Dynamic risk stratification models have the potential to improve clinical outcomes not only in COVID-19, but also in a myriad of other acute and chronic diseases that, to date, have largely been assessed only by static modeling techniques.</description><subject>Comorbidity</subject><subject>COVID-19</subject><subject>Female</subject><subject>Hospitalization</subject><subject>Humans</subject><subject>Male</subject><subject>Research and Applications</subject><subject>Retrospective Studies</subject><subject>Risk Factors</subject><subject>SARS-CoV-2</subject><issn>1527-974X</issn><issn>1067-5027</issn><issn>1527-974X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkU1P3DAQhi0E4vvYa-Ujl3T9lU18QUJLKUhIXGjVmzVxxrumSRzsLNL2xH_gH_JLCLBQOPU0I82jZ17pJeQLZ98403JyA62HSbBgGRcbZJfnosh0oX5vfth3yF5KN4zxqZD5NtmROZcFV3qXwOmqGw2WtqHGxndzGhxdhNT7ARr_F2s6u_p1cZpxTXsYPHZDohHvEJpEa58QEtI0wICP9w819tjVI0KjT3-oAzuEmA7IlhtpPFzPffLz7Pv17Dy7vPpxMTu5zKwSbMgcoCoE5mNmJatpVTngWGppawdFKTTYUte55KpgUJXCCVZyCVKoSrnSKpT75PjV2y-rFms75ojQmD76FuLKBPDm86XzCzMPd6bUTCouR8HRWhDD7RLTYFqfLDYNdBiWyYipKLgUhdQjmr2iNoaUIrr3N5yZ51rMSy1mXcvIf_2Y7Z1-6-Hf77Ds_-N6Ak6km68</recordid><startdate>20220413</startdate><enddate>20220413</enddate><creator>Soper, Braden C</creator><creator>Cadena, Jose</creator><creator>Nguyen, Sam</creator><creator>Chan, Kwan Ho Ryan</creator><creator>Kiszka, Paul</creator><creator>Womack, Lucas</creator><creator>Work, Mark</creator><creator>Duggan, Joan M</creator><creator>Haller, Steven T</creator><creator>Hanrahan, Jennifer A</creator><creator>Kennedy, David J</creator><creator>Mukundan, Deepa</creator><creator>Ray, Priyadip</creator><general>Oxford University Press</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20220413</creationdate><title>Dynamic modeling of hospitalized COVID-19 patients reveals disease state–dependent risk factors</title><author>Soper, Braden C ; Cadena, Jose ; Nguyen, Sam ; Chan, Kwan Ho Ryan ; Kiszka, Paul ; Womack, Lucas ; Work, Mark ; Duggan, Joan M ; Haller, Steven T ; Hanrahan, Jennifer A ; Kennedy, David J ; Mukundan, Deepa ; Ray, Priyadip</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c420t-fae472e515243b6bbfa1e893cdfa7829ac89d531470ab82f20813a324b4f8c4e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Comorbidity</topic><topic>COVID-19</topic><topic>Female</topic><topic>Hospitalization</topic><topic>Humans</topic><topic>Male</topic><topic>Research and Applications</topic><topic>Retrospective Studies</topic><topic>Risk Factors</topic><topic>SARS-CoV-2</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Soper, Braden C</creatorcontrib><creatorcontrib>Cadena, Jose</creatorcontrib><creatorcontrib>Nguyen, Sam</creatorcontrib><creatorcontrib>Chan, Kwan Ho Ryan</creatorcontrib><creatorcontrib>Kiszka, Paul</creatorcontrib><creatorcontrib>Womack, Lucas</creatorcontrib><creatorcontrib>Work, Mark</creatorcontrib><creatorcontrib>Duggan, Joan M</creatorcontrib><creatorcontrib>Haller, Steven T</creatorcontrib><creatorcontrib>Hanrahan, Jennifer A</creatorcontrib><creatorcontrib>Kennedy, David J</creatorcontrib><creatorcontrib>Mukundan, Deepa</creatorcontrib><creatorcontrib>Ray, Priyadip</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of the American Medical Informatics Association : JAMIA</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Soper, Braden C</au><au>Cadena, Jose</au><au>Nguyen, Sam</au><au>Chan, Kwan Ho Ryan</au><au>Kiszka, Paul</au><au>Womack, Lucas</au><au>Work, Mark</au><au>Duggan, Joan M</au><au>Haller, Steven T</au><au>Hanrahan, Jennifer A</au><au>Kennedy, David J</au><au>Mukundan, Deepa</au><au>Ray, Priyadip</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Dynamic modeling of hospitalized COVID-19 patients reveals disease state–dependent risk factors</atitle><jtitle>Journal of the American Medical Informatics Association : JAMIA</jtitle><addtitle>J Am Med Inform Assoc</addtitle><date>2022-04-13</date><risdate>2022</risdate><volume>29</volume><issue>5</issue><spage>864</spage><epage>872</epage><pages>864-872</pages><issn>1527-974X</issn><issn>1067-5027</issn><eissn>1527-974X</eissn><abstract>Abstract Objective The study sought to investigate the disease state–dependent risk profiles of patient demographics and medical comorbidities associated with adverse outcomes of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections. Materials and Methods A covariate-dependent, continuous-time hidden Markov model with 4 states (moderate, severe, discharged, and deceased) was used to model the dynamic progression of COVID-19 during the course of hospitalization. All model parameters were estimated using the electronic health records of 1362 patients from ProMedica Health System admitted between March 20, 2020 and December 29, 2020 with a positive nasopharyngeal PCR test for SARS-CoV-2. Demographic characteristics, comorbidities, vital signs, and laboratory test results were retrospectively evaluated to infer a patient’s clinical progression. Results The association between patient-level covariates and risk of progression was found to be disease state dependent. Specifically, while being male, being Black or having a medical comorbidity were all associated with an increased risk of progressing from the moderate disease state to the severe disease state, these same factors were associated with a decreased risk of progressing from the severe disease state to the deceased state. Discussion Recent studies have not included analyses of the temporal progression of COVID-19, making the current study a unique modeling-based approach to understand the dynamics of COVID-19 in hospitalized patients. Conclusion Dynamic risk stratification models have the potential to improve clinical outcomes not only in COVID-19, but also in a myriad of other acute and chronic diseases that, to date, have largely been assessed only by static modeling techniques.</abstract><cop>England</cop><pub>Oxford University Press</pub><pmid>35137149</pmid><doi>10.1093/jamia/ocac012</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 1527-974X
ispartof Journal of the American Medical Informatics Association : JAMIA, 2022-04, Vol.29 (5), p.864-872
issn 1527-974X
1067-5027
1527-974X
language eng
recordid cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_8903413
source Oxford University Press Journals All Titles (1996-Current); MEDLINE; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central
subjects Comorbidity
COVID-19
Female
Hospitalization
Humans
Male
Research and Applications
Retrospective Studies
Risk Factors
SARS-CoV-2
title Dynamic modeling of hospitalized COVID-19 patients reveals disease state–dependent risk factors
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-09T06%3A37%3A56IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Dynamic%20modeling%20of%20hospitalized%20COVID-19%20patients%20reveals%20disease%20state%E2%80%93dependent%20risk%20factors&rft.jtitle=Journal%20of%20the%20American%20Medical%20Informatics%20Association%20:%20JAMIA&rft.au=Soper,%20Braden%20C&rft.date=2022-04-13&rft.volume=29&rft.issue=5&rft.spage=864&rft.epage=872&rft.pages=864-872&rft.issn=1527-974X&rft.eissn=1527-974X&rft_id=info:doi/10.1093/jamia/ocac012&rft_dat=%3Cproquest_pubme%3E2627132739%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2627132739&rft_id=info:pmid/35137149&rft_oup_id=10.1093/jamia/ocac012&rfr_iscdi=true