The suppressor of copper sensitivity protein C from Caulobacter crescentus is a trimeric disulfide isomerase that binds copper(I) with subpicomolar affinity
The introduction of disulfide bonds into periplasmic proteins is a critical process in many Gram‐negative bacteria. The formation and regulation of protein disulfide bonds have been linked to the production of virulence factors. Understanding the different pathways involved in this process is import...
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Veröffentlicht in: | Acta crystallographica. Section D, Biological crystallography. Biological crystallography., 2022-03, Vol.78 (3), p.337-352 |
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creator | Petit, Guillaume A. Hong, Yaoqin Djoko, Karrera Y. Whitten, Andrew E. Furlong, Emily J. McCoy, Airlie J. Gulbis, Jacqueline M. Totsika, Makrina Martin, Jennifer L. Halili, Maria A. |
description | The introduction of disulfide bonds into periplasmic proteins is a critical process in many Gram‐negative bacteria. The formation and regulation of protein disulfide bonds have been linked to the production of virulence factors. Understanding the different pathways involved in this process is important in the development of strategies to disarm pathogenic bacteria. The well characterized disulfide bond‐forming (DSB) proteins play a key role by introducing or isomerizing disulfide bonds between cysteines in substrate proteins. Curiously, the suppressor of copper sensitivity C proteins (ScsCs), which are part of the bacterial copper‐resistance response, share structural and functional similarities with DSB oxidase and isomerase proteins, including the presence of a catalytic thioredoxin domain. However, the oxidoreductase activity of ScsC varies with its oligomerization state, which depends on a poorly conserved N‐terminal domain. Here, the structure and function of Caulobacter crescentus ScsC (CcScsC) have been characterized. It is shown that CcScsC binds copper in the copper(I) form with subpicomolar affinity and that its isomerase activity is comparable to that of Escherichia coli DsbC, the prototypical dimeric bacterial isomerase. It is also reported that CcScsC functionally complements trimeric Proteus mirabilis ScsC (PmScsC) in vivo, enabling the swarming of P. mirabilis in the presence of copper. Using mass photometry and small‐angle X‐ray scattering (SAXS) the protein is demonstrated to be trimeric in solution, like PmScsC, and not dimeric like EcDsbC. The crystal structure of CcScsC was also determined at a resolution of 2.6 Å, confirming the trimeric state and indicating that the trimerization results from interactions between the N‐terminal α‐helical domains of three CcScsC protomers. The SAXS data analysis suggested that the protomers are dynamic, like those of PmScsC, and are able to sample different conformations in solution.
The characterization of the suppressor of copper sensitivity protein C from C. crescentus is reported. |
doi_str_mv | 10.1107/S2059798322000729 |
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The characterization of the suppressor of copper sensitivity protein C from C. crescentus is reported.</description><identifier>ISSN: 2059-7983</identifier><identifier>ISSN: 0907-4449</identifier><identifier>EISSN: 2059-7983</identifier><identifier>EISSN: 1399-0047</identifier><identifier>DOI: 10.1107/S2059798322000729</identifier><identifier>PMID: 35234148</identifier><language>eng</language><publisher>5 Abbey Square, Chester, Cheshire CH1 2HU, England: International Union of Crystallography</publisher><subject>Affinity ; Bacteria ; Bonding ; Caulobacter crescentus ; Chemical bonds ; Copper ; copper‐binding proteins ; Crystal structure ; Data analysis ; Dimers ; Disulfide bonds ; disulfide bond‐forming proteins ; E coli ; Gram-negative bacteria ; Oligomerization ; Oxidoreductase ; Photometry ; Protein C ; protein trimers ; Proteins ; Research Papers ; Sensitivity ; Small angle X ray scattering ; Structure-function relationships ; Substrates ; suppressor of copper sensitivity protein C ; Swarming ; Thioredoxin ; Virulence ; Virulence factors ; X‐ray crystallography</subject><ispartof>Acta crystallographica. Section D, Biological crystallography., 2022-03, Vol.78 (3), p.337-352</ispartof><rights>2022 Guillaume A. Petit et al. published by IUCr Journals.</rights><rights>open access.</rights><rights>2022. This article is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>Guillaume A. Petit et al. 2022 2022</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4773-501387d23eed277df17d6c94f6eefbf5c6bc753145a9aafdfd25be70d00364f3</citedby><cites>FETCH-LOGICAL-c4773-501387d23eed277df17d6c94f6eefbf5c6bc753145a9aafdfd25be70d00364f3</cites><orcidid>0000-0003-4407-5269 ; 0000-0002-4408-2648 ; 0000-0002-9225-8863 ; 0000-0002-8251-0754 ; 0000-0003-2468-0293 ; 0000-0001-9814-6515 ; 0000-0001-8856-3120 ; 0000-0002-9086-2979</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1107%2FS2059798322000729$$EPDF$$P50$$Gwiley$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1107%2FS2059798322000729$$EHTML$$P50$$Gwiley$$Hfree_for_read</linktohtml><link.rule.ids>230,314,776,780,881,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35234148$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Petit, Guillaume A.</creatorcontrib><creatorcontrib>Hong, Yaoqin</creatorcontrib><creatorcontrib>Djoko, Karrera Y.</creatorcontrib><creatorcontrib>Whitten, Andrew E.</creatorcontrib><creatorcontrib>Furlong, Emily J.</creatorcontrib><creatorcontrib>McCoy, Airlie J.</creatorcontrib><creatorcontrib>Gulbis, Jacqueline M.</creatorcontrib><creatorcontrib>Totsika, Makrina</creatorcontrib><creatorcontrib>Martin, Jennifer L.</creatorcontrib><creatorcontrib>Halili, Maria A.</creatorcontrib><title>The suppressor of copper sensitivity protein C from Caulobacter crescentus is a trimeric disulfide isomerase that binds copper(I) with subpicomolar affinity</title><title>Acta crystallographica. Section D, Biological crystallography.</title><addtitle>Acta Crystallogr D Struct Biol</addtitle><description>The introduction of disulfide bonds into periplasmic proteins is a critical process in many Gram‐negative bacteria. The formation and regulation of protein disulfide bonds have been linked to the production of virulence factors. Understanding the different pathways involved in this process is important in the development of strategies to disarm pathogenic bacteria. The well characterized disulfide bond‐forming (DSB) proteins play a key role by introducing or isomerizing disulfide bonds between cysteines in substrate proteins. Curiously, the suppressor of copper sensitivity C proteins (ScsCs), which are part of the bacterial copper‐resistance response, share structural and functional similarities with DSB oxidase and isomerase proteins, including the presence of a catalytic thioredoxin domain. However, the oxidoreductase activity of ScsC varies with its oligomerization state, which depends on a poorly conserved N‐terminal domain. Here, the structure and function of Caulobacter crescentus ScsC (CcScsC) have been characterized. It is shown that CcScsC binds copper in the copper(I) form with subpicomolar affinity and that its isomerase activity is comparable to that of Escherichia coli DsbC, the prototypical dimeric bacterial isomerase. It is also reported that CcScsC functionally complements trimeric Proteus mirabilis ScsC (PmScsC) in vivo, enabling the swarming of P. mirabilis in the presence of copper. Using mass photometry and small‐angle X‐ray scattering (SAXS) the protein is demonstrated to be trimeric in solution, like PmScsC, and not dimeric like EcDsbC. The crystal structure of CcScsC was also determined at a resolution of 2.6 Å, confirming the trimeric state and indicating that the trimerization results from interactions between the N‐terminal α‐helical domains of three CcScsC protomers. The SAXS data analysis suggested that the protomers are dynamic, like those of PmScsC, and are able to sample different conformations in solution.
The characterization of the suppressor of copper sensitivity protein C from C. crescentus is reported.</description><subject>Affinity</subject><subject>Bacteria</subject><subject>Bonding</subject><subject>Caulobacter crescentus</subject><subject>Chemical bonds</subject><subject>Copper</subject><subject>copper‐binding proteins</subject><subject>Crystal structure</subject><subject>Data analysis</subject><subject>Dimers</subject><subject>Disulfide bonds</subject><subject>disulfide bond‐forming proteins</subject><subject>E coli</subject><subject>Gram-negative bacteria</subject><subject>Oligomerization</subject><subject>Oxidoreductase</subject><subject>Photometry</subject><subject>Protein C</subject><subject>protein trimers</subject><subject>Proteins</subject><subject>Research Papers</subject><subject>Sensitivity</subject><subject>Small angle X ray scattering</subject><subject>Structure-function relationships</subject><subject>Substrates</subject><subject>suppressor of copper sensitivity protein C</subject><subject>Swarming</subject><subject>Thioredoxin</subject><subject>Virulence</subject><subject>Virulence factors</subject><subject>X‐ray crystallography</subject><issn>2059-7983</issn><issn>0907-4449</issn><issn>2059-7983</issn><issn>1399-0047</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><recordid>eNqFkc1u1DAUhS0EolXpA7BBltiUxRT_JU42SKPhr1IlFoyEWFmOfc24SuJgO63mXXhYHM1QlbJgZev4u-fe44vQS0ouKSXy7VdGqla2DWeMECJZ-wSdLtJq0Z4-uJ-g85RuCkNrLikXz9EJrxgXVDSn6Nd2BzjN0xQhpRBxcNiEaYKIE4zJZ3_r8x5PMWTwI95gF8OAN3ruQ6dNLpgphQbGPCfsE9Y4Rz9A9AZbn-beeQtFD0XSCXDe6Yw7P9p07HJx9Qbf-bwrI3STN2EIvY5YO-fH0vcFeuZ0n-D8eJ6h7ccP283n1fWXT1eb9fXKCCn5qiKUN9IyDmCZlNZRaWvTClcDuM5Vpu6MrDgVlW61dtZZVnUgiSWE18LxM_TuYDvN3QB2SRN1r6aSRMe9Ctqrv19Gv1M_wq1qWkIa2hSDi6NBDD9nSFkNvnxK3-sRwpwUq8uHi5rVoqCvH6E3YY5jSbdQdUNEU8lC0QNlYkgpgrsfhhK1bF_9s_1S8-phivuKP7suQHsA7nwP-_87qvX39-zbuqKc898qGL8v</recordid><startdate>202203</startdate><enddate>202203</enddate><creator>Petit, Guillaume A.</creator><creator>Hong, Yaoqin</creator><creator>Djoko, Karrera Y.</creator><creator>Whitten, Andrew E.</creator><creator>Furlong, Emily J.</creator><creator>McCoy, Airlie J.</creator><creator>Gulbis, Jacqueline M.</creator><creator>Totsika, Makrina</creator><creator>Martin, Jennifer L.</creator><creator>Halili, Maria A.</creator><general>International Union of Crystallography</general><general>Wiley Subscription Services, Inc</general><scope>24P</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QP</scope><scope>7SP</scope><scope>7SR</scope><scope>7TK</scope><scope>7U5</scope><scope>8BQ</scope><scope>8FD</scope><scope>H8D</scope><scope>JG9</scope><scope>L7M</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0003-4407-5269</orcidid><orcidid>https://orcid.org/0000-0002-4408-2648</orcidid><orcidid>https://orcid.org/0000-0002-9225-8863</orcidid><orcidid>https://orcid.org/0000-0002-8251-0754</orcidid><orcidid>https://orcid.org/0000-0003-2468-0293</orcidid><orcidid>https://orcid.org/0000-0001-9814-6515</orcidid><orcidid>https://orcid.org/0000-0001-8856-3120</orcidid><orcidid>https://orcid.org/0000-0002-9086-2979</orcidid></search><sort><creationdate>202203</creationdate><title>The suppressor of copper sensitivity protein C from Caulobacter crescentus is a trimeric disulfide isomerase that binds copper(I) with subpicomolar affinity</title><author>Petit, Guillaume A. ; Hong, Yaoqin ; Djoko, Karrera Y. ; Whitten, Andrew E. ; Furlong, Emily J. ; McCoy, Airlie J. ; Gulbis, Jacqueline M. ; Totsika, Makrina ; Martin, Jennifer L. ; Halili, Maria A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4773-501387d23eed277df17d6c94f6eefbf5c6bc753145a9aafdfd25be70d00364f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Affinity</topic><topic>Bacteria</topic><topic>Bonding</topic><topic>Caulobacter crescentus</topic><topic>Chemical bonds</topic><topic>Copper</topic><topic>copper‐binding proteins</topic><topic>Crystal structure</topic><topic>Data analysis</topic><topic>Dimers</topic><topic>Disulfide bonds</topic><topic>disulfide bond‐forming proteins</topic><topic>E coli</topic><topic>Gram-negative bacteria</topic><topic>Oligomerization</topic><topic>Oxidoreductase</topic><topic>Photometry</topic><topic>Protein C</topic><topic>protein trimers</topic><topic>Proteins</topic><topic>Research Papers</topic><topic>Sensitivity</topic><topic>Small angle X ray scattering</topic><topic>Structure-function relationships</topic><topic>Substrates</topic><topic>suppressor of copper sensitivity protein C</topic><topic>Swarming</topic><topic>Thioredoxin</topic><topic>Virulence</topic><topic>Virulence factors</topic><topic>X‐ray crystallography</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Petit, Guillaume A.</creatorcontrib><creatorcontrib>Hong, Yaoqin</creatorcontrib><creatorcontrib>Djoko, Karrera Y.</creatorcontrib><creatorcontrib>Whitten, Andrew E.</creatorcontrib><creatorcontrib>Furlong, Emily J.</creatorcontrib><creatorcontrib>McCoy, Airlie J.</creatorcontrib><creatorcontrib>Gulbis, Jacqueline M.</creatorcontrib><creatorcontrib>Totsika, Makrina</creatorcontrib><creatorcontrib>Martin, Jennifer L.</creatorcontrib><creatorcontrib>Halili, Maria A.</creatorcontrib><collection>Wiley Online Library Open Access</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Electronics & Communications Abstracts</collection><collection>Engineered Materials Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>Aerospace Database</collection><collection>Materials Research Database</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Acta crystallographica. 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Section D, Biological crystallography.</jtitle><addtitle>Acta Crystallogr D Struct Biol</addtitle><date>2022-03</date><risdate>2022</risdate><volume>78</volume><issue>3</issue><spage>337</spage><epage>352</epage><pages>337-352</pages><issn>2059-7983</issn><issn>0907-4449</issn><eissn>2059-7983</eissn><eissn>1399-0047</eissn><abstract>The introduction of disulfide bonds into periplasmic proteins is a critical process in many Gram‐negative bacteria. The formation and regulation of protein disulfide bonds have been linked to the production of virulence factors. Understanding the different pathways involved in this process is important in the development of strategies to disarm pathogenic bacteria. The well characterized disulfide bond‐forming (DSB) proteins play a key role by introducing or isomerizing disulfide bonds between cysteines in substrate proteins. Curiously, the suppressor of copper sensitivity C proteins (ScsCs), which are part of the bacterial copper‐resistance response, share structural and functional similarities with DSB oxidase and isomerase proteins, including the presence of a catalytic thioredoxin domain. However, the oxidoreductase activity of ScsC varies with its oligomerization state, which depends on a poorly conserved N‐terminal domain. Here, the structure and function of Caulobacter crescentus ScsC (CcScsC) have been characterized. It is shown that CcScsC binds copper in the copper(I) form with subpicomolar affinity and that its isomerase activity is comparable to that of Escherichia coli DsbC, the prototypical dimeric bacterial isomerase. It is also reported that CcScsC functionally complements trimeric Proteus mirabilis ScsC (PmScsC) in vivo, enabling the swarming of P. mirabilis in the presence of copper. Using mass photometry and small‐angle X‐ray scattering (SAXS) the protein is demonstrated to be trimeric in solution, like PmScsC, and not dimeric like EcDsbC. The crystal structure of CcScsC was also determined at a resolution of 2.6 Å, confirming the trimeric state and indicating that the trimerization results from interactions between the N‐terminal α‐helical domains of three CcScsC protomers. The SAXS data analysis suggested that the protomers are dynamic, like those of PmScsC, and are able to sample different conformations in solution.
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subjects | Affinity Bacteria Bonding Caulobacter crescentus Chemical bonds Copper copper‐binding proteins Crystal structure Data analysis Dimers Disulfide bonds disulfide bond‐forming proteins E coli Gram-negative bacteria Oligomerization Oxidoreductase Photometry Protein C protein trimers Proteins Research Papers Sensitivity Small angle X ray scattering Structure-function relationships Substrates suppressor of copper sensitivity protein C Swarming Thioredoxin Virulence Virulence factors X‐ray crystallography |
title | The suppressor of copper sensitivity protein C from Caulobacter crescentus is a trimeric disulfide isomerase that binds copper(I) with subpicomolar affinity |
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