Klf4 Promotes Dentinogenesis and Odontoblastic Differentiation via Modulation of TGF‐β Signaling Pathway and Interaction With Histone Acetylation
ABSTRACT Transcription factors bind to cell‐specific cis‐regulatory elements, such as enhancers and promoters, to initiate much of the gene expression program of different biological process. Odontoblast differentiation is a necessary step for tooth formation and is also governed by a complex gene r...
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description | ABSTRACT
Transcription factors bind to cell‐specific cis‐regulatory elements, such as enhancers and promoters, to initiate much of the gene expression program of different biological process. Odontoblast differentiation is a necessary step for tooth formation and is also governed by a complex gene regulatory network. Our previous in vitro experiments showed that Krüppel‐like factor 4 (KLF4) can promote odontoblastic differentiation of both mouse dental papillary cells (mDPCs) and human dental pulp cells; however, its mechanism remains unclear. We first used Wnt1‐Cre; KLF4fx/fx (Klf4 cKO) mice to examine the role of KLF4 during odontoblast differentiation in vivo and demonstrated significantly impaired dentin mineralization and enlarged pulp/root canals. Additionally, combinatory analysis using RNA‐seq and ATAC‐seq revealed genomewide direct regulatory targets of KLF4 in mouse odontoblasts. We found that KLF4 can directly activate the TGF‐β signaling pathway at the beginning of odontoblast differentiation with Runx2 as a cofactor. Furthermore, we found that KLF4 can directly upregulate the expression levels of Dmp1 and Sp7, which are markers of odontoblastic differentiation, through binding to their promoters. Interestingly, as a transcription factor, KLF4 can also recruit histone acetylase as a regulatory companion to the downstream target genes to positively or negatively regulate transcription. To further investigate other regulatory companions of KLF4, we chose histone acetylase HDAC3 and P300. Immunoprecipitation demonstrated that KLF4 interacted with P300 and HDAC3. Next, ChIP analysis detected P300 and HDAC3 enrichment on the promoter region of KLF4 target genes Dmp1 and Sp7. HDAC3 mainly interacted with KLF4 on day 0 of odontoblastic induction, whereas P300 interacted on day 7 of induction. These temporal‐specific interactions regulated Dmp1 and Sp7 transcription, thus regulating dentinogenesis. Taken together, these results demonstrated that KLF4 regulates Dmp1 and Sp7 transcription via the modulation of histone acetylation and is vital to dentinogenesis. © 2019 American Society for Bone and Mineral Research. |
doi_str_mv | 10.1002/jbmr.3716 |
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Transcription factors bind to cell‐specific cis‐regulatory elements, such as enhancers and promoters, to initiate much of the gene expression program of different biological process. Odontoblast differentiation is a necessary step for tooth formation and is also governed by a complex gene regulatory network. Our previous in vitro experiments showed that Krüppel‐like factor 4 (KLF4) can promote odontoblastic differentiation of both mouse dental papillary cells (mDPCs) and human dental pulp cells; however, its mechanism remains unclear. We first used Wnt1‐Cre; KLF4fx/fx (Klf4 cKO) mice to examine the role of KLF4 during odontoblast differentiation in vivo and demonstrated significantly impaired dentin mineralization and enlarged pulp/root canals. Additionally, combinatory analysis using RNA‐seq and ATAC‐seq revealed genomewide direct regulatory targets of KLF4 in mouse odontoblasts. We found that KLF4 can directly activate the TGF‐β signaling pathway at the beginning of odontoblast differentiation with Runx2 as a cofactor. Furthermore, we found that KLF4 can directly upregulate the expression levels of Dmp1 and Sp7, which are markers of odontoblastic differentiation, through binding to their promoters. Interestingly, as a transcription factor, KLF4 can also recruit histone acetylase as a regulatory companion to the downstream target genes to positively or negatively regulate transcription. To further investigate other regulatory companions of KLF4, we chose histone acetylase HDAC3 and P300. Immunoprecipitation demonstrated that KLF4 interacted with P300 and HDAC3. Next, ChIP analysis detected P300 and HDAC3 enrichment on the promoter region of KLF4 target genes Dmp1 and Sp7. HDAC3 mainly interacted with KLF4 on day 0 of odontoblastic induction, whereas P300 interacted on day 7 of induction. These temporal‐specific interactions regulated Dmp1 and Sp7 transcription, thus regulating dentinogenesis. Taken together, these results demonstrated that KLF4 regulates Dmp1 and Sp7 transcription via the modulation of histone acetylation and is vital to dentinogenesis. © 2019 American Society for Bone and Mineral Research.</description><identifier>ISSN: 0884-0431</identifier><identifier>EISSN: 1523-4681</identifier><identifier>DOI: 10.1002/jbmr.3716</identifier><identifier>PMID: 31112333</identifier><language>eng</language><publisher>United States: Wiley Subscription Services, Inc</publisher><subject>Acetylation ; Animals ; Cbfa-1 protein ; Cell Differentiation ; Core Binding Factor Alpha 1 Subunit - biosynthesis ; Core Binding Factor Alpha 1 Subunit - genetics ; Dental pulp ; Dental Pulp - cytology ; Dental Pulp - metabolism ; Dentin ; DENTINOGENESIS ; Dmp1 ; Enhancers ; Event-related potentials ; Extracellular Matrix Proteins - biosynthesis ; Extracellular Matrix Proteins - genetics ; Gene expression ; Gene Expression Regulation ; HISTONE ACETYLATION ; Histone Deacetylase 2 - biosynthesis ; Histone Deacetylase 2 - genetics ; Histones - genetics ; Histones - metabolism ; Immunoprecipitation ; Klf4 ; KLF4 protein ; Kruppel-Like Factor 4 ; Kruppel-Like Transcription Factors - genetics ; Kruppel-Like Transcription Factors - metabolism ; Mice ; Mice, Knockout ; Mineralization ; Odontoblasts ; Odontoblasts - cytology ; Odontoblasts - metabolism ; Promoters ; Regulatory sequences ; Ribonucleic acid ; RNA ; Root canals ; Signal transduction ; Sp7 ; Sp7 Transcription Factor - biosynthesis ; Sp7 Transcription Factor - genetics ; Transcription factors ; Transcription, Genetic ; Transforming Growth Factor beta - genetics ; Transforming Growth Factor beta - metabolism</subject><ispartof>Journal of bone and mineral research, 2019-08, Vol.34 (8), p.1502-1516</ispartof><rights>2019 American Society for Bone and Mineral Research</rights><rights>2019 American Society for Bone and Mineral Research.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4436-936f183653173d3f372fa2ffd153d56f3637a906f7db262e5ee7273e4ae671833</citedby><cites>FETCH-LOGICAL-c4436-936f183653173d3f372fa2ffd153d56f3637a906f7db262e5ee7273e4ae671833</cites><orcidid>0000-0003-2095-1324</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fjbmr.3716$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fjbmr.3716$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>230,314,780,784,885,1416,27923,27924,45573,45574</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31112333$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Tao, Huangheng</creatorcontrib><creatorcontrib>Lin, Heng</creatorcontrib><creatorcontrib>Sun, Zheyi</creatorcontrib><creatorcontrib>Pei, Fei</creatorcontrib><creatorcontrib>Zhang, Jie</creatorcontrib><creatorcontrib>Chen, Shuo</creatorcontrib><creatorcontrib>Liu, Huan</creatorcontrib><creatorcontrib>Chen, Zhi</creatorcontrib><title>Klf4 Promotes Dentinogenesis and Odontoblastic Differentiation via Modulation of TGF‐β Signaling Pathway and Interaction With Histone Acetylation</title><title>Journal of bone and mineral research</title><addtitle>J Bone Miner Res</addtitle><description>ABSTRACT
Transcription factors bind to cell‐specific cis‐regulatory elements, such as enhancers and promoters, to initiate much of the gene expression program of different biological process. Odontoblast differentiation is a necessary step for tooth formation and is also governed by a complex gene regulatory network. Our previous in vitro experiments showed that Krüppel‐like factor 4 (KLF4) can promote odontoblastic differentiation of both mouse dental papillary cells (mDPCs) and human dental pulp cells; however, its mechanism remains unclear. We first used Wnt1‐Cre; KLF4fx/fx (Klf4 cKO) mice to examine the role of KLF4 during odontoblast differentiation in vivo and demonstrated significantly impaired dentin mineralization and enlarged pulp/root canals. Additionally, combinatory analysis using RNA‐seq and ATAC‐seq revealed genomewide direct regulatory targets of KLF4 in mouse odontoblasts. We found that KLF4 can directly activate the TGF‐β signaling pathway at the beginning of odontoblast differentiation with Runx2 as a cofactor. Furthermore, we found that KLF4 can directly upregulate the expression levels of Dmp1 and Sp7, which are markers of odontoblastic differentiation, through binding to their promoters. Interestingly, as a transcription factor, KLF4 can also recruit histone acetylase as a regulatory companion to the downstream target genes to positively or negatively regulate transcription. To further investigate other regulatory companions of KLF4, we chose histone acetylase HDAC3 and P300. Immunoprecipitation demonstrated that KLF4 interacted with P300 and HDAC3. Next, ChIP analysis detected P300 and HDAC3 enrichment on the promoter region of KLF4 target genes Dmp1 and Sp7. HDAC3 mainly interacted with KLF4 on day 0 of odontoblastic induction, whereas P300 interacted on day 7 of induction. These temporal‐specific interactions regulated Dmp1 and Sp7 transcription, thus regulating dentinogenesis. Taken together, these results demonstrated that KLF4 regulates Dmp1 and Sp7 transcription via the modulation of histone acetylation and is vital to dentinogenesis. © 2019 American Society for Bone and Mineral Research.</description><subject>Acetylation</subject><subject>Animals</subject><subject>Cbfa-1 protein</subject><subject>Cell Differentiation</subject><subject>Core Binding Factor Alpha 1 Subunit - biosynthesis</subject><subject>Core Binding Factor Alpha 1 Subunit - genetics</subject><subject>Dental pulp</subject><subject>Dental Pulp - cytology</subject><subject>Dental Pulp - metabolism</subject><subject>Dentin</subject><subject>DENTINOGENESIS</subject><subject>Dmp1</subject><subject>Enhancers</subject><subject>Event-related potentials</subject><subject>Extracellular Matrix Proteins - biosynthesis</subject><subject>Extracellular Matrix Proteins - genetics</subject><subject>Gene expression</subject><subject>Gene Expression Regulation</subject><subject>HISTONE ACETYLATION</subject><subject>Histone Deacetylase 2 - biosynthesis</subject><subject>Histone Deacetylase 2 - genetics</subject><subject>Histones - genetics</subject><subject>Histones - metabolism</subject><subject>Immunoprecipitation</subject><subject>Klf4</subject><subject>KLF4 protein</subject><subject>Kruppel-Like Factor 4</subject><subject>Kruppel-Like Transcription Factors - genetics</subject><subject>Kruppel-Like Transcription Factors - metabolism</subject><subject>Mice</subject><subject>Mice, Knockout</subject><subject>Mineralization</subject><subject>Odontoblasts</subject><subject>Odontoblasts - cytology</subject><subject>Odontoblasts - metabolism</subject><subject>Promoters</subject><subject>Regulatory sequences</subject><subject>Ribonucleic acid</subject><subject>RNA</subject><subject>Root canals</subject><subject>Signal transduction</subject><subject>Sp7</subject><subject>Sp7 Transcription Factor - biosynthesis</subject><subject>Sp7 Transcription Factor - genetics</subject><subject>Transcription factors</subject><subject>Transcription, Genetic</subject><subject>Transforming Growth Factor beta - genetics</subject><subject>Transforming Growth Factor beta - metabolism</subject><issn>0884-0431</issn><issn>1523-4681</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp1kU9u1DAUhyMEokNhwQWQJTawSGv7JXZmg1Ra-gdatYIilpYneZ7xKGMX22k1O47AgpNwEA7BSUgmpQIkVpblz59-7_2y7CmjO4xSvrucrcIOSCbuZRNWcsgLUbH72YRWVZHTAthW9ijGJaVUlEI8zLaAMcYBYJJ9e9eaglwEv_IJIzlAl6zzc3QYbSTaNeS88S75WatjsjU5sMZgGCidrHfk2mpy5puuHa_ekMujw59fvv74Tj7YudOtdXNyodPiRq83uhOXMOh6Q3-yaUGObUzeIdmrMa1HzePsgdFtxCe353b28fDN5f5xfnp-dLK_d5rXRQEin4IwrAJRApPQgAHJjebGNKyEphQGBEg9pcLIZsYFxxJRcglYaBSy_wjb2avRe9XNVtjU_VhBt-oq2JUOa-W1VX-_OLtQc3-tqmpaFlD0ghe3guA_dxiTWtlYY9tqh76LinPgVMop8B59_g-69F3oFzRQElhFK0p76uVI1cHHGNDchWFUDV2roWs1dN2zz_5Mf0f-LrcHdkfgxra4_r9JvX199n6j_AWrpLfN</recordid><startdate>201908</startdate><enddate>201908</enddate><creator>Tao, Huangheng</creator><creator>Lin, Heng</creator><creator>Sun, Zheyi</creator><creator>Pei, Fei</creator><creator>Zhang, Jie</creator><creator>Chen, Shuo</creator><creator>Liu, Huan</creator><creator>Chen, Zhi</creator><general>Wiley Subscription Services, Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QP</scope><scope>7TS</scope><scope>K9.</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0003-2095-1324</orcidid></search><sort><creationdate>201908</creationdate><title>Klf4 Promotes Dentinogenesis and Odontoblastic Differentiation via Modulation of TGF‐β Signaling Pathway and Interaction With Histone Acetylation</title><author>Tao, Huangheng ; Lin, Heng ; Sun, Zheyi ; Pei, Fei ; Zhang, Jie ; Chen, Shuo ; Liu, Huan ; Chen, Zhi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4436-936f183653173d3f372fa2ffd153d56f3637a906f7db262e5ee7273e4ae671833</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Acetylation</topic><topic>Animals</topic><topic>Cbfa-1 protein</topic><topic>Cell Differentiation</topic><topic>Core Binding Factor Alpha 1 Subunit - biosynthesis</topic><topic>Core Binding Factor Alpha 1 Subunit - genetics</topic><topic>Dental pulp</topic><topic>Dental Pulp - cytology</topic><topic>Dental Pulp - metabolism</topic><topic>Dentin</topic><topic>DENTINOGENESIS</topic><topic>Dmp1</topic><topic>Enhancers</topic><topic>Event-related potentials</topic><topic>Extracellular Matrix Proteins - biosynthesis</topic><topic>Extracellular Matrix Proteins - genetics</topic><topic>Gene expression</topic><topic>Gene Expression Regulation</topic><topic>HISTONE ACETYLATION</topic><topic>Histone Deacetylase 2 - biosynthesis</topic><topic>Histone Deacetylase 2 - genetics</topic><topic>Histones - genetics</topic><topic>Histones - metabolism</topic><topic>Immunoprecipitation</topic><topic>Klf4</topic><topic>KLF4 protein</topic><topic>Kruppel-Like Factor 4</topic><topic>Kruppel-Like Transcription Factors - genetics</topic><topic>Kruppel-Like Transcription Factors - metabolism</topic><topic>Mice</topic><topic>Mice, Knockout</topic><topic>Mineralization</topic><topic>Odontoblasts</topic><topic>Odontoblasts - cytology</topic><topic>Odontoblasts - metabolism</topic><topic>Promoters</topic><topic>Regulatory sequences</topic><topic>Ribonucleic acid</topic><topic>RNA</topic><topic>Root canals</topic><topic>Signal transduction</topic><topic>Sp7</topic><topic>Sp7 Transcription Factor - biosynthesis</topic><topic>Sp7 Transcription Factor - genetics</topic><topic>Transcription factors</topic><topic>Transcription, Genetic</topic><topic>Transforming Growth Factor beta - genetics</topic><topic>Transforming Growth Factor beta - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tao, Huangheng</creatorcontrib><creatorcontrib>Lin, Heng</creatorcontrib><creatorcontrib>Sun, Zheyi</creatorcontrib><creatorcontrib>Pei, Fei</creatorcontrib><creatorcontrib>Zhang, Jie</creatorcontrib><creatorcontrib>Chen, Shuo</creatorcontrib><creatorcontrib>Liu, Huan</creatorcontrib><creatorcontrib>Chen, Zhi</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Physical Education Index</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of bone and mineral research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Tao, Huangheng</au><au>Lin, Heng</au><au>Sun, Zheyi</au><au>Pei, Fei</au><au>Zhang, Jie</au><au>Chen, Shuo</au><au>Liu, Huan</au><au>Chen, Zhi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Klf4 Promotes Dentinogenesis and Odontoblastic Differentiation via Modulation of TGF‐β Signaling Pathway and Interaction With Histone Acetylation</atitle><jtitle>Journal of bone and mineral research</jtitle><addtitle>J Bone Miner Res</addtitle><date>2019-08</date><risdate>2019</risdate><volume>34</volume><issue>8</issue><spage>1502</spage><epage>1516</epage><pages>1502-1516</pages><issn>0884-0431</issn><eissn>1523-4681</eissn><abstract>ABSTRACT
Transcription factors bind to cell‐specific cis‐regulatory elements, such as enhancers and promoters, to initiate much of the gene expression program of different biological process. Odontoblast differentiation is a necessary step for tooth formation and is also governed by a complex gene regulatory network. Our previous in vitro experiments showed that Krüppel‐like factor 4 (KLF4) can promote odontoblastic differentiation of both mouse dental papillary cells (mDPCs) and human dental pulp cells; however, its mechanism remains unclear. We first used Wnt1‐Cre; KLF4fx/fx (Klf4 cKO) mice to examine the role of KLF4 during odontoblast differentiation in vivo and demonstrated significantly impaired dentin mineralization and enlarged pulp/root canals. Additionally, combinatory analysis using RNA‐seq and ATAC‐seq revealed genomewide direct regulatory targets of KLF4 in mouse odontoblasts. We found that KLF4 can directly activate the TGF‐β signaling pathway at the beginning of odontoblast differentiation with Runx2 as a cofactor. Furthermore, we found that KLF4 can directly upregulate the expression levels of Dmp1 and Sp7, which are markers of odontoblastic differentiation, through binding to their promoters. Interestingly, as a transcription factor, KLF4 can also recruit histone acetylase as a regulatory companion to the downstream target genes to positively or negatively regulate transcription. To further investigate other regulatory companions of KLF4, we chose histone acetylase HDAC3 and P300. Immunoprecipitation demonstrated that KLF4 interacted with P300 and HDAC3. Next, ChIP analysis detected P300 and HDAC3 enrichment on the promoter region of KLF4 target genes Dmp1 and Sp7. HDAC3 mainly interacted with KLF4 on day 0 of odontoblastic induction, whereas P300 interacted on day 7 of induction. These temporal‐specific interactions regulated Dmp1 and Sp7 transcription, thus regulating dentinogenesis. Taken together, these results demonstrated that KLF4 regulates Dmp1 and Sp7 transcription via the modulation of histone acetylation and is vital to dentinogenesis. © 2019 American Society for Bone and Mineral Research.</abstract><cop>United States</cop><pub>Wiley Subscription Services, Inc</pub><pmid>31112333</pmid><doi>10.1002/jbmr.3716</doi><tpages>15</tpages><orcidid>https://orcid.org/0000-0003-2095-1324</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Acetylation Animals Cbfa-1 protein Cell Differentiation Core Binding Factor Alpha 1 Subunit - biosynthesis Core Binding Factor Alpha 1 Subunit - genetics Dental pulp Dental Pulp - cytology Dental Pulp - metabolism Dentin DENTINOGENESIS Dmp1 Enhancers Event-related potentials Extracellular Matrix Proteins - biosynthesis Extracellular Matrix Proteins - genetics Gene expression Gene Expression Regulation HISTONE ACETYLATION Histone Deacetylase 2 - biosynthesis Histone Deacetylase 2 - genetics Histones - genetics Histones - metabolism Immunoprecipitation Klf4 KLF4 protein Kruppel-Like Factor 4 Kruppel-Like Transcription Factors - genetics Kruppel-Like Transcription Factors - metabolism Mice Mice, Knockout Mineralization Odontoblasts Odontoblasts - cytology Odontoblasts - metabolism Promoters Regulatory sequences Ribonucleic acid RNA Root canals Signal transduction Sp7 Sp7 Transcription Factor - biosynthesis Sp7 Transcription Factor - genetics Transcription factors Transcription, Genetic Transforming Growth Factor beta - genetics Transforming Growth Factor beta - metabolism |
title | Klf4 Promotes Dentinogenesis and Odontoblastic Differentiation via Modulation of TGF‐β Signaling Pathway and Interaction With Histone Acetylation |
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