Prediction the Molecular Mechanism of Shengmai Injection in Acute Treatment of COVID-19 Based on Network Pharmacology
Objective: To predict the mechanism of Shengmai Injection (SMI) in the acute treatment of COVID-19 by network pharmacology and molecular docking. Methods: Search the compounds in the Traditional Chinese Medicine Systems Pharmacology (TCMSP), and screen them by Drug-like properties (DL) and Oral bioa...
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Veröffentlicht in: | Natural product communications 2022-02, Vol.17 (2), p.1934578X221075075-1934578X221075075 |
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creator | Wang, Chen Liu, Ao-lei Wu, He-zhen Yang, Yan-fang |
description | Objective: To predict the mechanism of Shengmai Injection (SMI) in the acute treatment of COVID-19 by network pharmacology and molecular docking. Methods: Search the compounds in the Traditional Chinese Medicine Systems Pharmacology (TCMSP), and screen them by Drug-like properties (DL) and Oral bioavailability (OB); Using PharmMapper database and GeneCards database to collect compounds targets and COVID-19 targets, and using UniProt database to standardize the names of target genes; Using DAVID database for KEGG pathway annotation and GO bioinformatics analysis; Using Cytoscape 3.8.2 software and STRING 10.5 database to construct “Component-Target-Pathway” network and Protein-Protein Interaction network (PPI); Using molecular docking to predict the binding ability of key compounds and key proteins. Results: A total of 34 active components, 38 core targets and 180 signaling pathways were screened out. The results of molecular docking showed that Schisantherin A and Moupinamide have strong binding with EGFR and MAPK1. Conclusion: The key active compounds of SMI in the treatment of COVID-19 may be Schisantherin A and Moupinamide, and the molecular mechanism may be related to key targets such as EGFR and MAPK1, and may be involved in the PI3K-Akt signaling pathway and MAPK signaling pathway. |
doi_str_mv | 10.1177/1934578X221075075 |
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Methods: Search the compounds in the Traditional Chinese Medicine Systems Pharmacology (TCMSP), and screen them by Drug-like properties (DL) and Oral bioavailability (OB); Using PharmMapper database and GeneCards database to collect compounds targets and COVID-19 targets, and using UniProt database to standardize the names of target genes; Using DAVID database for KEGG pathway annotation and GO bioinformatics analysis; Using Cytoscape 3.8.2 software and STRING 10.5 database to construct “Component-Target-Pathway” network and Protein-Protein Interaction network (PPI); Using molecular docking to predict the binding ability of key compounds and key proteins. Results: A total of 34 active components, 38 core targets and 180 signaling pathways were screened out. The results of molecular docking showed that Schisantherin A and Moupinamide have strong binding with EGFR and MAPK1. Conclusion: The key active compounds of SMI in the treatment of COVID-19 may be Schisantherin A and Moupinamide, and the molecular mechanism may be related to key targets such as EGFR and MAPK1, and may be involved in the PI3K-Akt signaling pathway and MAPK signaling pathway.</description><identifier>ISSN: 1934-578X</identifier><identifier>EISSN: 1555-9475</identifier><identifier>DOI: 10.1177/1934578X221075075</identifier><identifier>PMID: 35136386</identifier><language>eng</language><publisher>Los Angeles, CA: SAGE Publications</publisher><subject>Original Research Paper</subject><ispartof>Natural product communications, 2022-02, Vol.17 (2), p.1934578X221075075-1934578X221075075</ispartof><rights>The Author(s) 2022</rights><rights>The Author(s) 2022.</rights><rights>The Author(s) 2022 2022 SAGE Publications Inc. unless otherwise noted. Manuscript content on this site is licensed under Creative Commons Licenses.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c438t-8d6e5908db1dcfac2ff03be6bdd389ba12d6cc3435cfbd3660af07fa734e01a73</citedby><cites>FETCH-LOGICAL-c438t-8d6e5908db1dcfac2ff03be6bdd389ba12d6cc3435cfbd3660af07fa734e01a73</cites><orcidid>0000-0001-5291-3694 ; 0000-0001-5214-7758</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://journals.sagepub.com/doi/pdf/10.1177/1934578X221075075$$EPDF$$P50$$Gsage$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://journals.sagepub.com/doi/10.1177/1934578X221075075$$EHTML$$P50$$Gsage$$Hfree_for_read</linktohtml><link.rule.ids>230,314,780,784,864,885,21966,27853,27924,27925,44945,45333</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35136386$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Wang, Chen</creatorcontrib><creatorcontrib>Liu, Ao-lei</creatorcontrib><creatorcontrib>Wu, He-zhen</creatorcontrib><creatorcontrib>Yang, Yan-fang</creatorcontrib><title>Prediction the Molecular Mechanism of Shengmai Injection in Acute Treatment of COVID-19 Based on Network Pharmacology</title><title>Natural product communications</title><addtitle>Nat Prod Commun</addtitle><description>Objective: To predict the mechanism of Shengmai Injection (SMI) in the acute treatment of COVID-19 by network pharmacology and molecular docking. Methods: Search the compounds in the Traditional Chinese Medicine Systems Pharmacology (TCMSP), and screen them by Drug-like properties (DL) and Oral bioavailability (OB); Using PharmMapper database and GeneCards database to collect compounds targets and COVID-19 targets, and using UniProt database to standardize the names of target genes; Using DAVID database for KEGG pathway annotation and GO bioinformatics analysis; Using Cytoscape 3.8.2 software and STRING 10.5 database to construct “Component-Target-Pathway” network and Protein-Protein Interaction network (PPI); Using molecular docking to predict the binding ability of key compounds and key proteins. Results: A total of 34 active components, 38 core targets and 180 signaling pathways were screened out. The results of molecular docking showed that Schisantherin A and Moupinamide have strong binding with EGFR and MAPK1. Conclusion: The key active compounds of SMI in the treatment of COVID-19 may be Schisantherin A and Moupinamide, and the molecular mechanism may be related to key targets such as EGFR and MAPK1, and may be involved in the PI3K-Akt signaling pathway and MAPK signaling pathway.</description><subject>Original Research Paper</subject><issn>1934-578X</issn><issn>1555-9475</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>AFRWT</sourceid><recordid>eNp9kV1rFTEQhoMottT-AG8kl95sm2w22eyNUI9fB1pbsIp3IZtMzua4m7TJrtJ_3xxOLYrgMDCBeeadIS9CLyk5obRtT2nHGt7K73VNSctLPkGHlHNedU3Ln5Z36Vc74AAd57wlJaRsSNM9RweMUyaYFIdouUpgvZl9DHgeAF_EEcwy6oQvwAw6-Dzh6PCXAcJm0h6vwxb2tA_4zCwz4OsEep4gzDtwdflt_a6iHX6rM1hcuM8w_4rpB74adJq0iWPc3L1Az5weMxw_1CP09cP769Wn6vzy43p1dl6Zhsm5klYA74i0PbXGaVM7R1gPoreWya7XtLbCGNYwblxvmRBEO9I63bIGCC3lCL3Z694s_QTWlCOTHtVN8pNOdypqr_7uBD-oTfyppKSNoLIIvH4QSPF2gTyryWcD46gDxCWrWtQtZZyz3S66R02KOSdwj2soUTvH1D-OlZlXf973OPHbnwKc7IGsN6C2cUmh_Nd_FO8Bd9qgoQ</recordid><startdate>20220201</startdate><enddate>20220201</enddate><creator>Wang, Chen</creator><creator>Liu, Ao-lei</creator><creator>Wu, He-zhen</creator><creator>Yang, Yan-fang</creator><general>SAGE Publications</general><scope>AFRWT</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0001-5291-3694</orcidid><orcidid>https://orcid.org/0000-0001-5214-7758</orcidid></search><sort><creationdate>20220201</creationdate><title>Prediction the Molecular Mechanism of Shengmai Injection in Acute Treatment of COVID-19 Based on Network Pharmacology</title><author>Wang, Chen ; Liu, Ao-lei ; Wu, He-zhen ; Yang, Yan-fang</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c438t-8d6e5908db1dcfac2ff03be6bdd389ba12d6cc3435cfbd3660af07fa734e01a73</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Original Research Paper</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wang, Chen</creatorcontrib><creatorcontrib>Liu, Ao-lei</creatorcontrib><creatorcontrib>Wu, He-zhen</creatorcontrib><creatorcontrib>Yang, Yan-fang</creatorcontrib><collection>Sage Journals GOLD Open Access 2024</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Natural product communications</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wang, Chen</au><au>Liu, Ao-lei</au><au>Wu, He-zhen</au><au>Yang, Yan-fang</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Prediction the Molecular Mechanism of Shengmai Injection in Acute Treatment of COVID-19 Based on Network Pharmacology</atitle><jtitle>Natural product communications</jtitle><addtitle>Nat Prod Commun</addtitle><date>2022-02-01</date><risdate>2022</risdate><volume>17</volume><issue>2</issue><spage>1934578X221075075</spage><epage>1934578X221075075</epage><pages>1934578X221075075-1934578X221075075</pages><issn>1934-578X</issn><eissn>1555-9475</eissn><abstract>Objective: To predict the mechanism of Shengmai Injection (SMI) in the acute treatment of COVID-19 by network pharmacology and molecular docking. Methods: Search the compounds in the Traditional Chinese Medicine Systems Pharmacology (TCMSP), and screen them by Drug-like properties (DL) and Oral bioavailability (OB); Using PharmMapper database and GeneCards database to collect compounds targets and COVID-19 targets, and using UniProt database to standardize the names of target genes; Using DAVID database for KEGG pathway annotation and GO bioinformatics analysis; Using Cytoscape 3.8.2 software and STRING 10.5 database to construct “Component-Target-Pathway” network and Protein-Protein Interaction network (PPI); Using molecular docking to predict the binding ability of key compounds and key proteins. Results: A total of 34 active components, 38 core targets and 180 signaling pathways were screened out. The results of molecular docking showed that Schisantherin A and Moupinamide have strong binding with EGFR and MAPK1. Conclusion: The key active compounds of SMI in the treatment of COVID-19 may be Schisantherin A and Moupinamide, and the molecular mechanism may be related to key targets such as EGFR and MAPK1, and may be involved in the PI3K-Akt signaling pathway and MAPK signaling pathway.</abstract><cop>Los Angeles, CA</cop><pub>SAGE Publications</pub><pmid>35136386</pmid><doi>10.1177/1934578X221075075</doi><orcidid>https://orcid.org/0000-0001-5291-3694</orcidid><orcidid>https://orcid.org/0000-0001-5214-7758</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Original Research Paper |
title | Prediction the Molecular Mechanism of Shengmai Injection in Acute Treatment of COVID-19 Based on Network Pharmacology |
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