Alzheimer-related genes show accelerated evolution
Alzheimerʼs disease (AD) is a neurodegenerative disorder of unknown cause with complex genetic and environmental traits. While AD is extremely prevalent in human elderly, it hardly occurs in non-primate mammals and even non-human-primates develop only an incomplete form of the disease. This specific...
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description | Alzheimerʼs disease (AD) is a neurodegenerative disorder of unknown cause with complex genetic and environmental traits. While AD is extremely prevalent in human elderly, it hardly occurs in non-primate mammals and even non-human-primates develop only an incomplete form of the disease. This specificity of AD to human clearly implies a phylogenetic aspect. Still, the evolutionary dimension of AD pathomechanism remains difficult to prove and has not been established so far. To analyze the evolutionary age and dynamics of AD-associated-genes, we established the AD-associated genome-wide RNA-profile comprising both protein-coding and non-protein-coding transcripts. We than applied a systematic analysis on the conservation of splice-sites as a measure of gene-structure based on multiple alignments across vertebrates of homologs of AD-associated-genes. Here, we show that nearly all AD-associated-genes are evolutionarily old and did not originate later in evolution than not-AD-associated-genes. However, the gene-structures of loci, that exhibit AD-associated changes in their expression, evolve faster than the genome at large. While protein-coding-loci exhibit an enhanced rate of small changes in gene structure, non-coding loci show even much larger changes. The accelerated evolution of AD-associated-genes indicates a more rapid functional adaptation of these genes. In particular AD-associated non-coding-genes play an important, as yet largely unexplored, role in AD. This phylogenetic trait indicates that recent adaptive evolution of human brain is causally involved in basic principles of neurodegeneration. It highlights the necessity for a paradigmatic change of our disease-concepts and to reconsider the appropriateness of current animal-models to develop disease-modifying strategies that can be translated to human. |
doi_str_mv | 10.1038/s41380-020-0680-1 |
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While AD is extremely prevalent in human elderly, it hardly occurs in non-primate mammals and even non-human-primates develop only an incomplete form of the disease. This specificity of AD to human clearly implies a phylogenetic aspect. Still, the evolutionary dimension of AD pathomechanism remains difficult to prove and has not been established so far. To analyze the evolutionary age and dynamics of AD-associated-genes, we established the AD-associated genome-wide RNA-profile comprising both protein-coding and non-protein-coding transcripts. We than applied a systematic analysis on the conservation of splice-sites as a measure of gene-structure based on multiple alignments across vertebrates of homologs of AD-associated-genes. Here, we show that nearly all AD-associated-genes are evolutionarily old and did not originate later in evolution than not-AD-associated-genes. However, the gene-structures of loci, that exhibit AD-associated changes in their expression, evolve faster than the genome at large. While protein-coding-loci exhibit an enhanced rate of small changes in gene structure, non-coding loci show even much larger changes. The accelerated evolution of AD-associated-genes indicates a more rapid functional adaptation of these genes. In particular AD-associated non-coding-genes play an important, as yet largely unexplored, role in AD. This phylogenetic trait indicates that recent adaptive evolution of human brain is causally involved in basic principles of neurodegeneration. It highlights the necessity for a paradigmatic change of our disease-concepts and to reconsider the appropriateness of current animal-models to develop disease-modifying strategies that can be translated to human.</description><identifier>ISSN: 1359-4184</identifier><identifier>EISSN: 1476-5578</identifier><identifier>DOI: 10.1038/s41380-020-0680-1</identifier><identifier>PMID: 32203153</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>13/105 ; 38/61 ; 631/378 ; 692/699/476 ; Alzheimer Disease - genetics ; Alzheimer's disease ; Animal models ; Animals ; Behavioral Sciences ; Biological Psychology ; Brain ; Development and progression ; Evolution & development ; Evolutionary genetics ; Genes ; Genetic aspects ; Genome ; Genome-Wide Association Study ; Genomes ; Medicine ; Medicine & Public Health ; Molecular evolution ; Neurodegeneration ; Neurodegenerative diseases ; Neurological research ; Neurosciences ; Non-coding RNA ; Pharmacotherapy ; Phylogenetics ; Phylogeny ; Proteins ; Psychiatry ; Risk factors</subject><ispartof>Molecular psychiatry, 2021-10, Vol.26 (10), p.5790-5796</ispartof><rights>The Author(s) 2020</rights><rights>2020. The Author(s).</rights><rights>COPYRIGHT 2021 Nature Publishing Group</rights><rights>The Author(s) 2020. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c537t-3b26e5d9eb89b2d243439f34e547c07483cb9631549baf5da8bef276e03398833</citedby><cites>FETCH-LOGICAL-c537t-3b26e5d9eb89b2d243439f34e547c07483cb9631549baf5da8bef276e03398833</cites><orcidid>0000-0003-4920-7072 ; 0000-0002-4452-4872 ; 0000-0002-5016-5191</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,780,784,885,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32203153$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Nitsche, Anne</creatorcontrib><creatorcontrib>Arnold, Christian</creatorcontrib><creatorcontrib>Ueberham, Uwe</creatorcontrib><creatorcontrib>Reiche, Kristin</creatorcontrib><creatorcontrib>Fallmann, Jörg</creatorcontrib><creatorcontrib>Hackermüller, Jörg</creatorcontrib><creatorcontrib>Horn, Friedemann</creatorcontrib><creatorcontrib>Stadler, Peter F.</creatorcontrib><creatorcontrib>Arendt, Thomas</creatorcontrib><title>Alzheimer-related genes show accelerated evolution</title><title>Molecular psychiatry</title><addtitle>Mol Psychiatry</addtitle><addtitle>Mol Psychiatry</addtitle><description>Alzheimerʼs disease (AD) is a neurodegenerative disorder of unknown cause with complex genetic and environmental traits. While AD is extremely prevalent in human elderly, it hardly occurs in non-primate mammals and even non-human-primates develop only an incomplete form of the disease. This specificity of AD to human clearly implies a phylogenetic aspect. Still, the evolutionary dimension of AD pathomechanism remains difficult to prove and has not been established so far. To analyze the evolutionary age and dynamics of AD-associated-genes, we established the AD-associated genome-wide RNA-profile comprising both protein-coding and non-protein-coding transcripts. We than applied a systematic analysis on the conservation of splice-sites as a measure of gene-structure based on multiple alignments across vertebrates of homologs of AD-associated-genes. Here, we show that nearly all AD-associated-genes are evolutionarily old and did not originate later in evolution than not-AD-associated-genes. However, the gene-structures of loci, that exhibit AD-associated changes in their expression, evolve faster than the genome at large. While protein-coding-loci exhibit an enhanced rate of small changes in gene structure, non-coding loci show even much larger changes. The accelerated evolution of AD-associated-genes indicates a more rapid functional adaptation of these genes. In particular AD-associated non-coding-genes play an important, as yet largely unexplored, role in AD. This phylogenetic trait indicates that recent adaptive evolution of human brain is causally involved in basic principles of neurodegeneration. It highlights the necessity for a paradigmatic change of our disease-concepts and to reconsider the appropriateness of current animal-models to develop disease-modifying strategies that can be translated to human.</description><subject>13/105</subject><subject>38/61</subject><subject>631/378</subject><subject>692/699/476</subject><subject>Alzheimer Disease - genetics</subject><subject>Alzheimer's disease</subject><subject>Animal models</subject><subject>Animals</subject><subject>Behavioral Sciences</subject><subject>Biological Psychology</subject><subject>Brain</subject><subject>Development and progression</subject><subject>Evolution & development</subject><subject>Evolutionary genetics</subject><subject>Genes</subject><subject>Genetic aspects</subject><subject>Genome</subject><subject>Genome-Wide Association Study</subject><subject>Genomes</subject><subject>Medicine</subject><subject>Medicine & Public Health</subject><subject>Molecular evolution</subject><subject>Neurodegeneration</subject><subject>Neurodegenerative diseases</subject><subject>Neurological research</subject><subject>Neurosciences</subject><subject>Non-coding RNA</subject><subject>Pharmacotherapy</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Proteins</subject><subject>Psychiatry</subject><subject>Risk factors</subject><issn>1359-4184</issn><issn>1476-5578</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp1UUtLNDEQDKL4_gFeZMHzaJJOZpKLsIgvELzoOWQyPbuRmYkms8r3_Xqzrk9QQpOmu6qopgg5YPSYUVAnSTBQtKA8V5kbtka2majKQspKrecepC4EU2KL7KT0QOlyKTfJFnBOgUnYJnza_Z-j7zEWETs7YjOZ4YBpkubhZWKdww7j2xifQ7cYfRj2yEZru4T77_8uub84vzu7Km5uL6_PpjeFk1CNBdS8RNlorJWuecMFCNAtCJSicrQSClyty-xC6Nq2srGqxpZXJVIArRTALjld6T4u6h4bh8MYbWceo-9t_GeC9ebnZvBzMwvPRlVSCUWzwNG7QAxPC0yjeQiLOGTPhpdMA1Ql-4aa2Q6NH9qQxVzvkzPTUjOqJVCVUce_oPJrsPcuDNj6PP9BYCuCiyGliO2ncUbNMj2zSs_k9MwyPcMy5_D7xZ-Mj7gygK8AKa-GGcavi_5WfQVOCKMU</recordid><startdate>20211001</startdate><enddate>20211001</enddate><creator>Nitsche, Anne</creator><creator>Arnold, Christian</creator><creator>Ueberham, Uwe</creator><creator>Reiche, Kristin</creator><creator>Fallmann, Jörg</creator><creator>Hackermüller, Jörg</creator><creator>Horn, Friedemann</creator><creator>Stadler, Peter F.</creator><creator>Arendt, Thomas</creator><general>Nature Publishing Group UK</general><general>Nature Publishing Group</general><scope>C6C</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>88G</scope><scope>8AO</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2M</scope><scope>M7P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PSYQQ</scope><scope>Q9U</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0003-4920-7072</orcidid><orcidid>https://orcid.org/0000-0002-4452-4872</orcidid><orcidid>https://orcid.org/0000-0002-5016-5191</orcidid></search><sort><creationdate>20211001</creationdate><title>Alzheimer-related genes show accelerated evolution</title><author>Nitsche, Anne ; Arnold, Christian ; Ueberham, Uwe ; Reiche, Kristin ; Fallmann, Jörg ; Hackermüller, Jörg ; Horn, Friedemann ; Stadler, Peter F. ; Arendt, Thomas</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c537t-3b26e5d9eb89b2d243439f34e547c07483cb9631549baf5da8bef276e03398833</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>13/105</topic><topic>38/61</topic><topic>631/378</topic><topic>692/699/476</topic><topic>Alzheimer Disease - 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While AD is extremely prevalent in human elderly, it hardly occurs in non-primate mammals and even non-human-primates develop only an incomplete form of the disease. This specificity of AD to human clearly implies a phylogenetic aspect. Still, the evolutionary dimension of AD pathomechanism remains difficult to prove and has not been established so far. To analyze the evolutionary age and dynamics of AD-associated-genes, we established the AD-associated genome-wide RNA-profile comprising both protein-coding and non-protein-coding transcripts. We than applied a systematic analysis on the conservation of splice-sites as a measure of gene-structure based on multiple alignments across vertebrates of homologs of AD-associated-genes. Here, we show that nearly all AD-associated-genes are evolutionarily old and did not originate later in evolution than not-AD-associated-genes. However, the gene-structures of loci, that exhibit AD-associated changes in their expression, evolve faster than the genome at large. While protein-coding-loci exhibit an enhanced rate of small changes in gene structure, non-coding loci show even much larger changes. The accelerated evolution of AD-associated-genes indicates a more rapid functional adaptation of these genes. In particular AD-associated non-coding-genes play an important, as yet largely unexplored, role in AD. This phylogenetic trait indicates that recent adaptive evolution of human brain is causally involved in basic principles of neurodegeneration. It highlights the necessity for a paradigmatic change of our disease-concepts and to reconsider the appropriateness of current animal-models to develop disease-modifying strategies that can be translated to human.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>32203153</pmid><doi>10.1038/s41380-020-0680-1</doi><tpages>7</tpages><orcidid>https://orcid.org/0000-0003-4920-7072</orcidid><orcidid>https://orcid.org/0000-0002-4452-4872</orcidid><orcidid>https://orcid.org/0000-0002-5016-5191</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | 13/105 38/61 631/378 692/699/476 Alzheimer Disease - genetics Alzheimer's disease Animal models Animals Behavioral Sciences Biological Psychology Brain Development and progression Evolution & development Evolutionary genetics Genes Genetic aspects Genome Genome-Wide Association Study Genomes Medicine Medicine & Public Health Molecular evolution Neurodegeneration Neurodegenerative diseases Neurological research Neurosciences Non-coding RNA Pharmacotherapy Phylogenetics Phylogeny Proteins Psychiatry Risk factors |
title | Alzheimer-related genes show accelerated evolution |
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